FFCP PHASE1:Hg19::chr4:166908300..166908336,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:166908300..166908336,+ | |||
|coexpression_cluster_id=C322 | |coexpression_cluster_id=C322 | ||
|description=CAGE_peak_at_chr4:166908300..166908336,+ | |description=CAGE_peak_at_chr4:166908300..166908336,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000306;9.45e-18;4!CL:0002222;9.45e-18;4!CL:0002224;9.45e-18;4 | |ontology_enrichment_celltype_v019=CL:0000306;9.45e-18;4!CL:0002222;9.45e-18;4!CL:0002224;9.45e-18;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.03e-17,4;CL:0002222,1.03e-17,4;CL:0002224,1.03e-17,4 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.40e-14;5 | |ontology_enrichment_development_v019=UBERON:0007123;1.40e-14;5 | ||
|ontology_enrichment_disease=DOID:305!2.99e-09!106 | |ontology_enrichment_disease=DOID:305!2.99e-09!106 | ||
|ontology_enrichment_disease_v019=DOID:1325;9.43e-11;7!DOID:3904;9.43e-11;7 | |ontology_enrichment_disease_v019=DOID:1325;9.43e-11;7!DOID:3904;9.43e-11;7 | ||
|ontology_enrichment_disease_v019_2=DOID:1325,8.99e-11,7;DOID:3904,8.99e-11,7 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.49e-17!9;UBERON:0001282!3.41e-11!1;UBERON:0009842!3.41e-11!1;UBERON:0003704!3.41e-11!1;UBERON:0001171!3.41e-11!1;UBERON:0001172!3.41e-11!1;UBERON:0002022!1.77e-10!1;UBERON:0001557!2.59e-08!19 | |ontology_enrichment_uberon=UBERON:0001737!2.49e-17!9;UBERON:0001282!3.41e-11!1;UBERON:0009842!3.41e-11!1;UBERON:0003704!3.41e-11!1;UBERON:0001171!3.41e-11!1;UBERON:0001172!3.41e-11!1;UBERON:0002022!1.77e-10!1;UBERON:0001557!2.59e-08!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;9.45e-18;4!UBERON:0005389;9.45e-18;4!UBERON:0000484;9.45e-18;4!UBERON:0000965;9.45e-18;4!UBERON:0001803;9.45e-18;4!UBERON:0002046;1.40e-14;5!UBERON:0007625;2.55e-07;11 | |ontology_enrichment_uberon_v019=UBERON:0010077;9.45e-18;4!UBERON:0005389;9.45e-18;4!UBERON:0000484;9.45e-18;4!UBERON:0000965;9.45e-18;4!UBERON:0001803;9.45e-18;4!UBERON:0002046;1.40e-14;5!UBERON:0007625;2.55e-07;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,1.03e-17,4;UBERON:0005389,1.03e-17,4;UBERON:0000484,1.03e-17,4;UBERON:0002546,1.03e-17,4;UBERON:0000965,1.03e-17,4;UBERON:0001803,1.03e-17,4;UBERON:0003073,1.03e-17,4;UBERON:0005426,1.03e-17,4;UBERON:0002046,1.40e-14,5;UBERON:0004117,1.40e-14,5;UBERON:0007689,1.40e-14,5;UBERON:0007123,1.40e-14,5;UBERON:0003091,1.40e-14,5;UBERON:0000076,1.47e-09,8;UBERON:0009722,2.32e-07,11;UBERON:0007690,2.32e-07,11;UBERON:0007625,2.63e-07,11 | |||
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|short_description=p@chr4:166908300..166908336,+ | |short_description=p@chr4:166908300..166908336,+ | ||
}} | }} |
Latest revision as of 03:04, 30 July 2015
Short description: | p@chr4:166908300..166908336, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:166908300..166908336, + |
Coexpression cluster: | C322_thyroid_anaplastic_gastric_testis_papillary_fibrous_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.03e-17 | 4 |
vertebrate lens cell | 1.03e-17 | 4 |
lens epithelial cell | 1.03e-17 | 4 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 1.03e-17 | 4 |
transparent eye structure | 1.03e-17 | 4 |
simple cuboidal epithelium | 1.03e-17 | 4 |
cranial placode | 1.03e-17 | 4 |
lens of camera-type eye | 1.03e-17 | 4 |
epithelium of lens | 1.03e-17 | 4 |
lens placode | 1.03e-17 | 4 |
lens vesicle | 1.03e-17 | 4 |
thyroid gland | 1.40e-14 | 5 |
pharyngeal pouch | 1.40e-14 | 5 |
thyroid diverticulum | 1.40e-14 | 5 |
pharyngeal pouch 2 | 1.40e-14 | 5 |
thyroid primordium | 1.40e-14 | 5 |
external ectoderm | 1.47e-09 | 8 |
entire pharyngeal arch endoderm | 2.32e-07 | 11 |
early pharyngeal endoderm | 2.32e-07 | 11 |
pigment epithelium of eye | 2.63e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
bronchus cancer | 8.99e-11 | 7 |
bronchogenic carcinoma | 8.99e-11 | 7 |