FFCP PHASE1:Hg19::chr10:43133545..43133554,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:43133545..43133554,- | |||
|description=CAGE_peak_at_chr10:43133545..43133554,- | |description=CAGE_peak_at_chr10:43133545..43133554,- | ||
|id=chr10:43133545..43133554,- | |id=chr10:43133545..43133554,- | ||
|ontology_enrichment_celltype=CL:0000066!2.98e-10!254 | |ontology_enrichment_celltype=CL:0000066!2.98e-10!254 | ||
|ontology_enrichment_celltype_v019=CL:0002328;9.45e-18;3!CL:0002577;9.45e-18;3!CL:0000312;3.26e-11;5!CL:0000240;1.44e-09;6!CL:0000311;1.44e-09;6!CL:0000079;1.44e-09;6!CL:0000237;1.44e-09;6!CL:0002202;8.37e-07;9!CL:0000362;8.37e-07;9!CL:0002632;8.37e-07;9 | |ontology_enrichment_celltype_v019=CL:0002328;9.45e-18;3!CL:0002577;9.45e-18;3!CL:0000312;3.26e-11;5!CL:0000240;1.44e-09;6!CL:0000311;1.44e-09;6!CL:0000079;1.44e-09;6!CL:0000237;1.44e-09;6!CL:0002202;8.37e-07;9!CL:0000362;8.37e-07;9!CL:0002632;8.37e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0002577,8.00e-18,3;CL:0002328,1.12e-17,3;CL:0000312,3.26e-11,5;CL:0000240,1.44e-09,6;CL:0000311,1.44e-09,6;CL:0000079,1.44e-09,6;CL:0000237,1.44e-09,6;CL:0000036,1.44e-09,6;CL:0000357,1.44e-09,6;CL:0000114,1.44e-09,6;CL:0000362,8.37e-07,9;CL:0002202,8.85e-07,9;CL:0002632,8.85e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000357;1.44e-09;6!CL:0000114;1.44e-09;6 | |ontology_enrichment_development_v019=CL:0000357;1.44e-09;6!CL:0000114;1.44e-09;6 | ||
|ontology_enrichment_disease=DOID:305!1.40e-11!106;DOID:0050687!3.33e-09!143 | |ontology_enrichment_disease=DOID:305!1.40e-11!106;DOID:0050687!3.33e-09!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.12e-07!169;UBERON:0000925!1.12e-07!169;UBERON:0006595!1.12e-07!169 | |ontology_enrichment_uberon=UBERON:0004119!1.12e-07!169;UBERON:0000925!1.12e-07!169;UBERON:0006595!1.12e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;9.45e-18;3!UBERON:0002031;9.45e-18;3!UBERON:0003343;8.81e-14;4!UBERON:0004785;8.81e-14;4!UBERON:0001987;1.13e-13;4!UBERON:0002185;3.26e-11;5!UBERON:0000974;1.22e-09;6!UBERON:0000485;2.18e-08;7 | |ontology_enrichment_uberon_v019=UBERON:0004815;9.45e-18;3!UBERON:0002031;9.45e-18;3!UBERON:0003343;8.81e-14;4!UBERON:0004785;8.81e-14;4!UBERON:0001987;1.13e-13;4!UBERON:0002185;3.26e-11;5!UBERON:0000974;1.22e-09;6!UBERON:0000485;2.18e-08;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.12e-17,3;UBERON:0002031,1.12e-17,3;UBERON:0003343,8.82e-14,4;UBERON:0004785,8.82e-14,4;UBERON:0001987,1.00e-13,4;UBERON:0004340,1.00e-13,4;UBERON:0002185,3.60e-11,5;UBERON:0003124,2.03e-08,7;UBERON:0000485,8.85e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534893840235659,0.246301768349837,0.157421562627358,0,0,0,0,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0.205601498999509,0.334372990781356,0,0,0,0.111410456885174,0,0.221533894583621,0,0.384273959177026,0.260118695119756,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0,0.253019692019503,0,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0,0.403213486449465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.573609190778008,0,0.132529768321485,0.232387885739037,0.10366105501537,0.504641701751257,0.72995471815166,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,1.1240175325762,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0.93733833986777,0.16798212819886,0.283550194484773,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0.112085143993527,0,0.215627574859517,0.128343036279748,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0.330569830721956,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0,0,0.0711418433484141,0,0.399158742865633,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0.341380344856499,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0,0.23056390438806,0,0.108647371922008,0,0,0,0,0,0.166211681900156,0,0.19606253431774,0.167821586975843,0.189753732724185,0,0.210998064528027,0.163232808159148,0.706765357169704,0,0,0.176915129006678,0,0,0,0,0,0,0.234264445725339,0,0,0.242780379534093,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0.138674673013139,0.347119476670262,0.195984794828755,0.522355239482415,0.17472666824203,0,0.19351266257817,0.365446585430928,0.164230914106418,0.0969890164884194,0.0882561266915003,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0.229073192331831,0,0.14405479798815,0.124252535565433,0,0.271808412147228,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.236349546921671,0.0824158583811665,0.26961417541674,0,0,0,0,0.321506296930038,0.412618309791701,0.415440338029185,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0.252071696221718,0,0,0,3.33702242903487,0,0.550285795565037,0,0,0,0.198916222116275,0.0752103283492573,0,0,0.261906694481422,0,0.295712172434091,0,0,0,0,0.546974809018219,0,0,0,0.127762427639595,0,0,0,0.227662191351298,0,0.115233987555779,0,0.135939465953663,0,0,0.333694205676207,0.156986185701028,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0.233939463462106,0,0.118920090777569,0.11294608203896,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.186224142887574,0,0,0,0,0,0,0.143444410785353,0,0.0814032686109745,0.426909383510862,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534893840235659,0.246301768349837,0.157421562627358,0,0,0,0,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0.205601498999509,0.334372990781356,0,0,0,0.111410456885174,0,0.221533894583621,0,0.384273959177026,0.260118695119756,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0,0.253019692019503,0,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0,0.403213486449465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.573609190778008,0,0.132529768321485,0.232387885739037,0.10366105501537,0.504641701751257,0.72995471815166,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,1.1240175325762,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0.93733833986777,0.16798212819886,0.283550194484773,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0.112085143993527,0,0.215627574859517,0.128343036279748,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0.330569830721956,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0,0,0,0,0.0711418433484141,0,0.399158742865633,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0.341380344856499,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.221158519862449,0,0,0,0,0,0,0.23056390438806,0,0.108647371922008,0,0,0,0,0,0.166211681900156,0,0.19606253431774,0.167821586975843,0.189753732724185,0,0.210998064528027,0.163232808159148,0.706765357169704,0,0,0.176915129006678,0,0,0,0,0,0,0.234264445725339,0,0,0.242780379534093,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0.138674673013139,0.347119476670262,0.195984794828755,0.522355239482415,0.17472666824203,0,0.19351266257817,0.365446585430928,0.164230914106418,0.0969890164884194,0.0882561266915003,0,0,0,0,0.195551382734803,0,0.213452994739353,0,0,0.229073192331831,0,0.14405479798815,0.124252535565433,0,0.271808412147228,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.236349546921671,0.0824158583811665,0.26961417541674,0,0,0,0,0.321506296930038,0.412618309791701,0.415440338029185,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0.168942440653073,0.256241518587947,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0.252071696221718,0,0,0,3.33702242903487,0,0.550285795565037,0,0,0,0.198916222116275,0.0752103283492573,0,0,0.261906694481422,0,0.295712172434091,0,0,0,0,0.546974809018219,0,0,0,0.127762427639595,0,0,0,0.227662191351298,0,0.115233987555779,0,0.135939465953663,0,0,0.333694205676207,0.156986185701028,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0.233939463462106,0,0.118920090777569,0.11294608203896,0,0,0.0771741581079447,0.437119121007915,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0.186224142887574,0,0,0,0,0,0,0.143444410785353,0,0.0814032686109745,0.426909383510862,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p@chr10:43133545..43133554,- | |short_description=p@chr10:43133545..43133554,- | ||
}} | }} |
Latest revision as of 13:41, 23 July 2015
Short description: | p@chr10:43133545..43133554, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:43133545..43133554, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 8.00e-18 | 3 |
bronchial epithelial cell | 1.12e-17 | 3 |
keratinocyte | 3.26e-11 | 5 |
stratified squamous epithelial cell | 1.44e-09 | 6 |
keratin accumulating cell | 1.44e-09 | 6 |
stratified epithelial cell | 1.44e-09 | 6 |
keratinizing barrier epithelial cell | 1.44e-09 | 6 |
epithelial fate stem cell | 1.44e-09 | 6 |
stratified epithelial stem cell | 1.44e-09 | 6 |
surface ectodermal cell | 1.44e-09 | 6 |
epidermal cell | 8.37e-07 | 9 |
epithelial cell of tracheobronchial tree | 8.85e-07 | 9 |
epithelial cell of lower respiratory tract | 8.85e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.12e-17 | 3 |
epithelium of bronchus | 1.12e-17 | 3 |
mucosa of oral region | 8.82e-14 | 4 |
respiratory system mucosa | 8.82e-14 | 4 |
placenta | 1.00e-13 | 4 |
allantois | 1.00e-13 | 4 |
bronchus | 3.60e-11 | 5 |
chorion | 2.03e-08 | 7 |
simple columnar epithelium | 8.85e-07 | 9 |