FFCP PHASE1:Hg19::chr12:78359984..78359998,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=89795 | |EntrezGene=89795 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15998 | |HGNC=15998 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-57bp_to_ENST00000547725,ENST00000550503_5end | |association_with_transcript=-57bp_to_ENST00000547725,ENST00000550503_5end | ||
|cluster_id=chr12:78359984..78359998,+ | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_19_at_NAV3_5end | |description=CAGE_peak_19_at_NAV3_5end | ||
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|ontology_enrichment_celltype=CL:0000128!1.56e-08!7;CL:0000126!1.56e-08!7;CL:0000127!1.56e-08!7;CL:0002453!1.56e-08!7;CL:0002605!2.96e-08!3;CL:0000149!9.01e-07!4 | |ontology_enrichment_celltype=CL:0000128!1.56e-08!7;CL:0000126!1.56e-08!7;CL:0000127!1.56e-08!7;CL:0002453!1.56e-08!7;CL:0002605!2.96e-08!3;CL:0000149!9.01e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002174;2.54e-21;1!CL:0000501;2.54e-21;1!CL:0000511;6.31e-21;1!CL:0002625;6.31e-21;1!CL:0000222;6.31e-21;1!CL:0000216;6.31e-21;1!CL:0002616;6.31e-21;1!CL:0000174;5.36e-08;3!CL:0002586;5.36e-08;3 | |ontology_enrichment_celltype_v019=CL:0002174;2.54e-21;1!CL:0000501;2.54e-21;1!CL:0000511;6.31e-21;1!CL:0002625;6.31e-21;1!CL:0000222;6.31e-21;1!CL:0000216;6.31e-21;1!CL:0002616;6.31e-21;1!CL:0000174;5.36e-08;3!CL:0002586;5.36e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002174,2.82e-21,1;CL:0000501,2.82e-21,1;CL:0002616,4.22e-21,1;CL:0000511,5.16e-21,1;CL:0002625,5.16e-21,1;CL:0000216,5.16e-21,1;CL:0002586,5.18e-08,3;CL:0000174,5.54e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.52e-08;3!UBERON:0006241;5.36e-08;3!UBERON:0003057;5.36e-08;3 | |ontology_enrichment_development_v019=UBERON:0003056;4.52e-08;3!UBERON:0006241;5.36e-08;3!UBERON:0003057;5.36e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!9.63e-18!86;UBERON:0001049!1.43e-15!57;UBERON:0005068!1.43e-15!57;UBERON:0006241!1.43e-15!57;UBERON:0007135!1.43e-15!57;UBERON:0003075!2.19e-15!86;UBERON:0007284!2.19e-15!86;UBERON:0000073!2.47e-15!94;UBERON:0001016!2.47e-15!94;UBERON:0001017!2.06e-14!82;UBERON:0002346!2.25e-14!90;UBERON:0002616!3.20e-13!59;UBERON:0000955!1.28e-12!69;UBERON:0006238!1.28e-12!69;UBERON:0002780!3.30e-10!41;UBERON:0001890!3.30e-10!41;UBERON:0006240!3.30e-10!41;UBERON:0003056!3.44e-10!61;UBERON:0003080!6.95e-10!42;UBERON:0001893!1.20e-09!34;UBERON:0004121!2.47e-09!169;UBERON:0000475!4.21e-09!365;UBERON:0000924!6.34e-09!173;UBERON:0006601!6.34e-09!173;UBERON:0002791!1.45e-08!33;UBERON:0001896!1.50e-08!3;UBERON:0005290!1.50e-08!3;UBERON:0010096!1.50e-08!3;UBERON:0000033!2.32e-08!123;UBERON:0007023!9.83e-08!115;UBERON:0000153!1.13e-07!129;UBERON:0007811!1.13e-07!129;UBERON:0002298!1.23e-07!8;UBERON:0001869!2.00e-07!32;UBERON:0003076!2.20e-07!15;UBERON:0003057!2.20e-07!15;UBERON:0003688!3.43e-07!6;UBERON:0002358!3.43e-07!6;UBERON:0003684!3.43e-07!6;UBERON:0001178!3.43e-07!6;UBERON:0000956!5.35e-07!25;UBERON:0000203!5.35e-07!25;UBERON:0002020!7.15e-07!34;UBERON:0003528!7.15e-07!34 | |ontology_enrichment_uberon=UBERON:0005743!9.63e-18!86;UBERON:0001049!1.43e-15!57;UBERON:0005068!1.43e-15!57;UBERON:0006241!1.43e-15!57;UBERON:0007135!1.43e-15!57;UBERON:0003075!2.19e-15!86;UBERON:0007284!2.19e-15!86;UBERON:0000073!2.47e-15!94;UBERON:0001016!2.47e-15!94;UBERON:0001017!2.06e-14!82;UBERON:0002346!2.25e-14!90;UBERON:0002616!3.20e-13!59;UBERON:0000955!1.28e-12!69;UBERON:0006238!1.28e-12!69;UBERON:0002780!3.30e-10!41;UBERON:0001890!3.30e-10!41;UBERON:0006240!3.30e-10!41;UBERON:0003056!3.44e-10!61;UBERON:0003080!6.95e-10!42;UBERON:0001893!1.20e-09!34;UBERON:0004121!2.47e-09!169;UBERON:0000475!4.21e-09!365;UBERON:0000924!6.34e-09!173;UBERON:0006601!6.34e-09!173;UBERON:0002791!1.45e-08!33;UBERON:0001896!1.50e-08!3;UBERON:0005290!1.50e-08!3;UBERON:0010096!1.50e-08!3;UBERON:0000033!2.32e-08!123;UBERON:0007023!9.83e-08!115;UBERON:0000153!1.13e-07!129;UBERON:0007811!1.13e-07!129;UBERON:0002298!1.23e-07!8;UBERON:0001869!2.00e-07!32;UBERON:0003076!2.20e-07!15;UBERON:0003057!2.20e-07!15;UBERON:0003688!3.43e-07!6;UBERON:0002358!3.43e-07!6;UBERON:0003684!3.43e-07!6;UBERON:0001178!3.43e-07!6;UBERON:0000956!5.35e-07!25;UBERON:0000203!5.35e-07!25;UBERON:0002020!7.15e-07!34;UBERON:0003528!7.15e-07!34 | ||
|ontology_enrichment_uberon_v019=UBERON:0001136;6.31e-21;1!UBERON:0001343;6.31e-21;1!UBERON:0004910;6.31e-21;1!UBERON:0004813;6.31e-21;1!UBERON:0000966;4.46e-17;5!UBERON:0005388;4.46e-17;5!UBERON:0001802;4.46e-17;5!UBERON:0004909;3.70e-11;2!UBERON:0005406;3.70e-11;2!UBERON:0000970;1.23e-09;20!UBERON:0002104;3.30e-09;21!UBERON:0000020;1.86e-08;23!UBERON:0001032;3.95e-08;24!UBERON:0004456;3.95e-08;24!UBERON:0002240;5.36e-08;3!UBERON:0001781;5.36e-08;3!UBERON:0005174;5.36e-08;3!UBERON:0001782;5.36e-08;3!UBERON:0001137;5.36e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0001136;6.31e-21;1!UBERON:0001343;6.31e-21;1!UBERON:0004910;6.31e-21;1!UBERON:0004813;6.31e-21;1!UBERON:0000966;4.46e-17;5!UBERON:0005388;4.46e-17;5!UBERON:0001802;4.46e-17;5!UBERON:0004909;3.70e-11;2!UBERON:0005406;3.70e-11;2!UBERON:0000970;1.23e-09;20!UBERON:0002104;3.30e-09;21!UBERON:0000020;1.86e-08;23!UBERON:0001032;3.95e-08;24!UBERON:0004456;3.95e-08;24!UBERON:0002240;5.36e-08;3!UBERON:0001781;5.36e-08;3!UBERON:0005174;5.36e-08;3!UBERON:0001782;5.36e-08;3!UBERON:0001137;5.36e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001136,5.16e-21,1;UBERON:0001343,5.16e-21,1;UBERON:0004910,5.16e-21,1;UBERON:0005154,5.16e-21,1;UBERON:0005295,5.16e-21,1;UBERON:0004813,5.16e-21,1;UBERON:0005297,5.16e-21,1;UBERON:0005294,5.16e-21,1;UBERON:0010141,5.16e-21,1;UBERON:0005891,5.16e-21,1;UBERON:0000966,2.04e-14,6;UBERON:0005388,2.04e-14,6;UBERON:0001802,2.04e-14,6;UBERON:0005406,3.02e-11,2;UBERON:0004909,3.35e-11,2;UBERON:0000970,3.26e-09,21;UBERON:0002104,3.26e-09,21;UBERON:0000020,3.91e-08,24;UBERON:0001032,3.91e-08,24;UBERON:0004456,3.91e-08,24;UBERON:0001782,5.18e-08,3;UBERON:0005424,5.18e-08,3;UBERON:0002240,5.93e-08,3;UBERON:0005174,5.93e-08,3;UBERON:0001137,5.93e-08,3 | |||
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| ||
|short_description=p19@NAV3 | |short_description=p19@NAV3 | ||
}} | }} |
Latest revision as of 22:42, 24 September 2015
Short description: | p19@NAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_NAV3_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -57bp_to_ENST00000547725, ENST00000550503_5end |
EntrezGene: | NAV3 |
HGNC: | 15998 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
follicular cell of ovary | 2.82e-21 | 1 |
granulosa cell | 2.82e-21 | 1 |
perirenal adipocyte cell | 4.22e-21 | 1 |
androgen binding protein secreting cell | 5.16e-21 | 1 |
seminiferous tubule epithelial cell | 5.16e-21 | 1 |
Sertoli cell | 5.16e-21 | 1 |
retinal pigment epithelial cell | 5.18e-08 | 3 |
steroid hormone secreting cell | 5.54e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
mesothelium | 5.16e-21 | 1 |
seminiferous tubule of testis | 5.16e-21 | 1 |
epithelium of male gonad | 5.16e-21 | 1 |
epithelial cord | 5.16e-21 | 1 |
sex cord | 5.16e-21 | 1 |
seminiferous tubule epithelium | 5.16e-21 | 1 |
testis sex cord | 5.16e-21 | 1 |
genital ridge | 5.16e-21 | 1 |
primitive sex cord of indifferent gonad | 5.16e-21 | 1 |
coelomic epithelium | 5.16e-21 | 1 |
retina | 2.04e-14 | 6 |
photoreceptor array | 2.04e-14 | 6 |
posterior segment of eyeball | 2.04e-14 | 6 |
perirenal fat | 3.02e-11 | 2 |
epithelium of gonad | 3.35e-11 | 2 |
eye | 3.26e-09 | 21 |
visual system | 3.26e-09 | 21 |
sense organ | 3.91e-08 | 24 |
sensory system | 3.91e-08 | 24 |
entire sense organ system | 3.91e-08 | 24 |
pigmented layer of retina | 5.18e-08 | 3 |
presumptive retinal pigmented epithelium | 5.18e-08 | 3 |
spinal cord | 5.93e-08 | 3 |
dorsal region element | 5.93e-08 | 3 |
dorsum | 5.93e-08 | 3 |