FFCP PHASE1:Hg19::chr1:20915390..20915406,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:20915390..20915406,+
|short_description=p3@CDA
|description=CAGE_peak_3_at_CDA_5end
|association_with_transcript=-34bp_to_ENST00000375071_5end
|EntrezGene...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=978 | |EntrezGene=978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1712 | |HGNC=1712 | ||
|TSSclassifier=strong | |||
|UniProt=P32320 | |UniProt=P32320 | ||
|association_with_transcript=-34bp_to_ENST00000375071_5end | |||
|cluster_id=chr1:20915390..20915406,+ | |||
|description=CAGE_peak_3_at_CDA_5end | |||
|id=chr1:20915390..20915406,+ | |||
|ontology_enrichment_celltype=CL:0002194!2.55e-26!63;CL:0000576!2.55e-26!63;CL:0000040!2.55e-26!63;CL:0000559!2.55e-26!63;CL:0000860!2.63e-25!45;CL:0002009!4.82e-25!65;CL:0000766!1.79e-23!76;CL:0002057!2.15e-22!42;CL:0000839!3.47e-22!70;CL:0000557!1.15e-21!71;CL:0000763!1.88e-13!112;CL:0000049!1.88e-13!112;CL:0002087!1.42e-10!119;CL:0002393!5.23e-09!9;CL:0002397!5.23e-09!9;CL:0000738!6.23e-09!140;CL:0002031!8.82e-08!124 | |||
|ontology_enrichment_celltype_v019=CL:0000766;3.99e-12;69!CL:0000473;1.82e-11;39!CL:0000234;1.82e-11;39!CL:0000576;1.17e-10;48!CL:0002393;3.71e-10;6!CL:0002397;3.71e-10;6!CL:0000775;4.79e-10;3!CL:0000875;1.78e-09;3!CL:0002396;1.78e-09;3!CL:0000860;2.94e-08;33!CL:0002057;2.94e-08;33!CL:0002379;1.00e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.46e-23,48;CL:0000234,1.46e-23,48;CL:0000860,1.03e-19,42;CL:0002057,1.03e-19,42;CL:0000766,1.70e-19,72;CL:0002194,2.68e-18,59;CL:0000576,2.68e-18,59;CL:0000040,2.68e-18,59;CL:0000559,2.68e-18,59;CL:0002009,1.28e-17,61;CL:0002393,1.39e-17,9;CL:0002397,1.39e-17,9;CL:0000839,4.23e-16,66;CL:0000557,8.01e-16,67;CL:0000763,9.85e-14,108;CL:0000049,9.85e-14,108;CL:0000738,3.18e-10,136;CL:0000775,5.74e-10,3;CL:0002087,1.63e-09,115;CL:0000875,1.86e-09,3;CL:0002396,1.86e-09,3;CL:0000037,8.91e-09,168;CL:0000988,3.75e-08,177;CL:0002032,3.91e-08,161;CL:0000837,3.91e-08,161;CL:0002031,1.04e-07,120;CL:0002379,1.44e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002057;5.31e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3620;1.00e-07;1!DOID:3565;1.00e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3620,1.44e-07,1;DOID:3565,1.44e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!5.86e-22!102;UBERON:0003061!5.86e-22!102;UBERON:0002193!3.59e-20!112;UBERON:0002371!1.19e-18!80;UBERON:0001474!2.42e-16!86;UBERON:0004765!4.68e-15!101;UBERON:0001434!4.68e-15!101;UBERON:0002405!4.57e-14!115;UBERON:0001737!2.37e-09!9;UBERON:0000062!1.79e-08!511;UBERON:0000926!7.04e-08!448;UBERON:0004120!7.04e-08!448;UBERON:0006603!7.04e-08!448;UBERON:0007023!1.16e-07!115;UBERON:0000467!1.19e-07!625;UBERON:0000480!1.42e-07!626;UBERON:0000468!3.67e-07!659;UBERON:0002204!4.40e-07!167;UBERON:0000923!5.06e-07!604;UBERON:0005291!5.06e-07!604;UBERON:0006598!5.06e-07!604;UBERON:0002532!5.06e-07!604;UBERON:0002050!5.96e-07!605;UBERON:0005423!5.96e-07!605;UBERON:0000922!8.07e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.34e-07;9!UBERON:0001557;6.34e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.18e-13,76;UBERON:0002390,1.72e-13,98;UBERON:0003061,1.72e-13,98;UBERON:0001474,1.81e-12,82;UBERON:0002193,5.85e-12,108;UBERON:0004765,3.92e-11,90;UBERON:0002405,1.08e-10,93;UBERON:0001434,9.18e-10,100;UBERON:0001737,6.69e-07,9 | |||
|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928896739896456,0,0,0,0,0,0.293600439334847,0,0.802177789880567,0.434021741431704,0,0.647787332037959,0.515151135268373,0.436194716338694,0.755751887377619,0.727752183563449,1.85943229524548,0.411167888021826,0,0,0.256160706529101,0.236482229888585,1.03423704220986,1.29096936716765,0,0,0.818718450173537,0.674170453335254,0.918251677112708,0.320929027076094,0.639337125799041,0,0.398927315243264,0,0,0.56738522469114,0,0,0.521482918420201,1.08594422352558,0.605399502633369,0,0.949387162322653,1.05627643155971,1.4882300997553,1.46761051855863,2.13424399178341,1.95229960693958,1.92870704036496,0.285012743741249,1.19350006319454,1.46131323011707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,1.15877215168659,0.795285947051099,0,0,0,0,0.0654895377488563,0.364295288292542,0,0,0.348259474598534,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0.946454400318751,1.34867752062481,1.20505514941741,1.21323370005633,0,0.949082476444386,0.943819157121151,0.98110732562673,0.769494313892781,0,0,0,0,0,0.982827216677626,0,0,0,0,0.109750285408626,0,0.402115889646523,0,0,0,0,0,0,0,0,0.190254152234598,0,0,1.72351904261178,0.468008530278475,0.891786973732369,0,0.335964256397719,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,2.51128545716063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24702107184155,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,1.2942852049117,0.426910231213777,0,0,0,0.248107807818777,0,0,0,0,0.321707842287215,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0.235624804691373,0,0,0,0,0.974853958525138,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.422215270595328,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0.764637207142375,0.569647187174163,0.476463550915578,0.822724546172388,0,0.540031437238115,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0.313359791546046,0,0,0,0,0,1.37402137902306,0,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0.269605053441981,0.179021174675609,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0.435753854075961,0,0.153900517007594,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0.937057782901357,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0.387025325156341,2.11959019549938,0.492692742319255,0.0969890164884194,0,0,0.137041924646751,0.19871461170299,0.0633107959558787,0,0.0801588202515337,0,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0.164831716762333,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.394028536495991,0.0524545881349981,0.211200673038813,0,0.191915197319445,0,0,0,0.542999601753713,0,0,0,0,0,0,0.293104467356165,0,0.258565912723101,0.26446520348538,1.19760786519031,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0.500763722825999,0.573409195690071,0.221858103073705,0,0,0,0,0,1.17632909849086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0.57785949122191,0,0,0,0,2.44736704506468,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0,0.138258436151731,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0,0,1.53651993149159,0.444925607568277,0.156986185701028,0,0,0,0.215927591218621,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,3.41227024230752,2.8666168169323,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0.169927114687817,0,0.128915775947154,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0.310298987585686,0,0.23806443146374,0,0.0620747142958579,0,0.190941474834495,0,0,0,0,0,0,0.0814032686109745,1.06727345877715,0,0.179650404213174,0,0.366724332548599,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928896739896456,0,0,0,0,0,0.293600439334847,0,0.802177789880567,0.434021741431704,0,0.647787332037959,0.515151135268373,0.436194716338694,0.755751887377619,0.727752183563449,1.85943229524548,0.411167888021826,0,0,0.256160706529101,0.236482229888585,1.03423704220986,1.29096936716765,0,0,0.818718450173537,0.674170453335254,0.918251677112708,0.320929027076094,0.639337125799041,0,0.398927315243264,0,0,0.56738522469114,0,0,0.521482918420201,1.08594422352558,0.605399502633369,0,0.949387162322653,1.05627643155971,1.4882300997553,1.46761051855863,2.13424399178341,1.95229960693958,1.92870704036496,0.285012743741249,1.19350006319454,1.46131323011707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,1.15877215168659,0.795285947051099,0,0,0,0,0.0654895377488563,0.364295288292542,0,0,0.348259474598534,0.664789802594326,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0.946454400318751,1.34867752062481,1.20505514941741,1.21323370005633,0,0.949082476444386,0.943819157121151,0.98110732562673,0.769494313892781,0,0,0,0,0,0.982827216677626,0,0,0,0,0.109750285408626,0,0.402115889646523,0,0,0,0,0,0,0,0,0.190254152234598,0,0,1.72351904261178,0.468008530278475,0.891786973732369,0,0.335964256397719,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,2.51128545716063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24702107184155,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,1.2942852049117,0.426910231213777,0,0,0,0.248107807818777,0,0,0,0,0.321707842287215,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0.235624804691373,0,0,0,0,0.974853958525138,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0.422215270595328,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0.764637207142375,0.569647187174163,0.476463550915578,0.822724546172388,0,0.540031437238115,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0.313359791546046,0,0,0,0,0,1.37402137902306,0,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0,0,0,0.269605053441981,0.179021174675609,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0.435753854075961,0,0.153900517007594,0,0,0,0,0.31900115973192,0.274792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,0,0,0,0,0,0,0.937057782901357,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0.387025325156341,2.11959019549938,0.492692742319255,0.0969890164884194,0,0,0.137041924646751,0.19871461170299,0.0633107959558787,0,0.0801588202515337,0,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0.164831716762333,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.394028536495991,0.0524545881349981,0.211200673038813,0,0.191915197319445,0,0,0,0.542999601753713,0,0,0,0,0,0,0.293104467356165,0,0.258565912723101,0.26446520348538,1.19760786519031,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0.500763722825999,0.573409195690071,0.221858103073705,0,0,0,0,0,1.17632909849086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0.57785949122191,0,0,0,0,2.44736704506468,0,0,0,0.176689145945881,0,0.168942440653073,0,0,0,0.138258436151731,0,0,0,0,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.0752103283492573,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0,0,1.53651993149159,0.444925607568277,0.156986185701028,0,0,0,0.215927591218621,0,0.357382720883282,0,0,0,0,0,0,0,0,0,0,0,0,3.41227024230752,2.8666168169323,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0.169927114687817,0,0.128915775947154,0,0,0,0,0,0,0.143339583151451,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0.310298987585686,0,0.23806443146374,0,0.0620747142958579,0,0.190941474834495,0,0,0,0,0,0,0.0814032686109745,1.06727345877715,0,0.179650404213174,0,0.366724332548599,0,0,0,0 | ||
|short_description=p3@CDA | |||
}} | }} |
Latest revision as of 18:28, 24 September 2015
Short description: | p3@CDA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDA_5end |
Coexpression cluster: | NA |
Association with transcript: | -34bp_to_ENST00000375071_5end |
EntrezGene: | CDA |
HGNC: | 1712 |
UniProt: | P32320 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.46e-23 | 48 |
phagocyte | 1.46e-23 | 48 |
classical monocyte | 1.03e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.03e-19 | 42 |
myeloid leukocyte | 1.70e-19 | 72 |
monopoietic cell | 2.68e-18 | 59 |
monocyte | 2.68e-18 | 59 |
monoblast | 2.68e-18 | 59 |
promonocyte | 2.68e-18 | 59 |
macrophage dendritic cell progenitor | 1.28e-17 | 61 |
intermediate monocyte | 1.39e-17 | 9 |
CD14-positive, CD16-positive monocyte | 1.39e-17 | 9 |
myeloid lineage restricted progenitor cell | 4.23e-16 | 66 |
granulocyte monocyte progenitor cell | 8.01e-16 | 67 |
myeloid cell | 9.85e-14 | 108 |
common myeloid progenitor | 9.85e-14 | 108 |
leukocyte | 3.18e-10 | 136 |
neutrophil | 5.74e-10 | 3 |
nongranular leukocyte | 1.63e-09 | 115 |
non-classical monocyte | 1.86e-09 | 3 |
CD14-low, CD16-positive monocyte | 1.86e-09 | 3 |
hematopoietic stem cell | 8.91e-09 | 168 |
hematopoietic cell | 3.75e-08 | 177 |
hematopoietic oligopotent progenitor cell | 3.91e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.91e-08 | 161 |
hematopoietic lineage restricted progenitor cell | 1.04e-07 | 120 |
meningothelial cell | 1.44e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.18e-13 | 76 |
hematopoietic system | 1.72e-13 | 98 |
blood island | 1.72e-13 | 98 |
bone element | 1.81e-12 | 82 |
hemolymphoid system | 5.85e-12 | 108 |
skeletal element | 3.92e-11 | 90 |
immune system | 1.08e-10 | 93 |
skeletal system | 9.18e-10 | 100 |
larynx | 6.69e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 1.44e-07 | 1 |
meningioma | 1.44e-07 | 1 |