FFCP PHASE1:Hg19::chr2:128398118..128398151,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-140bp_to_ENST00000494613_5end | |association_with_transcript=-140bp_to_ENST00000494613_5end | ||
|cluster_id=chr2:128398118..128398151,- | |||
|description=CAGE_peak_16_at_LIMS2_5end | |description=CAGE_peak_16_at_LIMS2_5end | ||
|id=chr2:128398118..128398151,- | |id=chr2:128398118..128398151,- | ||
|ontology_enrichment_celltype=CL:0000084!2.37e-07!25;CL:0000827!2.37e-07!25 | |ontology_enrichment_celltype=CL:0000084!2.37e-07!25;CL:0000827!2.37e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.96e-13;12!CL:0000624;3.89e-10;6!CL:0000898;1.86e-09;3!CL:0000084;6.46e-09;25!CL:0000228;1.04e-07;1!CL:0002372;1.04e-07;1!CL:0000895;1.04e-07;1!CL:0000669;1.64e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.02e-13,12;CL:0000624,3.55e-10,6;CL:0000898,1.50e-09,3;CL:0000084,5.81e-09,25;CL:0000827,5.81e-09,25;CL:0000810,6.10e-08,1;CL:0000895,6.10e-08,1;CL:0002436,6.10e-08,1;CL:0002427,6.10e-08,1;CL:0002428,6.10e-08,1;CL:0002429,6.10e-08,1;CL:0002433,6.10e-08,1;CL:0002431,6.10e-08,1;CL:0002432,6.10e-08,1;CL:0000228,7.97e-08,1;CL:0002372,7.97e-08,1;CL:0000669,1.27e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.81e-09;11!UBERON:0009497;4.97e-08;13!CL:0002427;1.04e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:6193;3.79e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,3.32e-08,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.21e-08;19!UBERON:0006925;3.21e-08;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.71e-08,19;UBERON:0006925,3.71e-08,19;UBERON:0008836,3.71e-08,19;UBERON:0008835,5.14e-07,22;UBERON:0003894,5.14e-07,22 | |||
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| ||
|short_description=p16@LIMS2 | |short_description=p16@LIMS2 | ||
}} | }} |
Latest revision as of 20:55, 16 September 2015
Short description: | p16@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_LIMS2_5end |
Coexpression cluster: | NA |
Association with transcript: | -140bp_to_ENST00000494613_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.02e-13 | 12 |
CD4-positive, alpha-beta T cell | 3.55e-10 | 6 |
naive T cell | 1.50e-09 | 3 |
T cell | 5.81e-09 | 25 |
pro-T cell | 5.81e-09 | 25 |
CD4-positive, alpha-beta thymocyte | 6.10e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 6.10e-08 | 1 |
mature CD4 single-positive thymocyte | 6.10e-08 | 1 |
resting double-positive thymocyte | 6.10e-08 | 1 |
double-positive blast | 6.10e-08 | 1 |
CD69-positive double-positive thymocyte | 6.10e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 6.10e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 6.10e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 6.10e-08 | 1 |
multinucleate cell | 7.97e-08 | 1 |
myotube | 7.97e-08 | 1 |
pericyte cell | 1.27e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
liver | 3.71e-08 | 19 |
digestive gland | 3.71e-08 | 19 |
liver bud | 3.71e-08 | 19 |
hepatic diverticulum | 5.14e-07 | 22 |
liver primordium | 5.14e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 3.32e-08 | 1 |