FFCP PHASE1:Hg19::chr19:58898627..58898649,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6193 | |EntrezGene=6193 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10426 | |HGNC=10426 | ||
|TSSclassifier=strong | |||
|UniProt=P46782 | |UniProt=P46782 | ||
|association_with_transcript=0bp_to_ENST00000196551,NM_001009,uc002qsn.2_5end | |association_with_transcript=0bp_to_ENST00000196551,NM_001009,uc002qsn.2_5end | ||
|cluster_id=chr19:58898627..58898649,+ | |||
|coexpression_cluster_id=C3829 | |coexpression_cluster_id=C3829 | ||
|description=CAGE_peak_1_at_RPS5_5end | |description=CAGE_peak_1_at_RPS5_5end | ||
|id=chr19:58898627..58898649,+ | |id=chr19:58898627..58898649,+ | ||
|ontology_enrichment_celltype=CL:0000012!3.40e-33!682;CL:0000548!5.27e-31!679;CL:0000004!5.27e-31!679;CL:0000255!5.27e-31!679;CL:0000003!2.99e-30!722;CL:0000144!1.51e-26!625;CL:0002371!1.54e-22!591;CL:0000063!5.47e-13!578;CL:0000220!7.34e-13!246;CL:0002321!1.37e-12!248;CL:0000183!1.06e-10!59;CL:0000542!1.83e-10!53;CL:0000051!1.83e-10!53;CL:0000838!2.48e-10!52;CL:0000222!2.67e-10!119;CL:0000066!2.32e-09!254;CL:0000393!5.24e-09!60;CL:0000211!5.24e-09!60;CL:0000187!5.37e-09!54;CL:0000192!1.61e-08!42;CL:0000514!1.61e-08!42;CL:0000680!2.61e-08!57;CL:0000056!2.61e-08!57;CL:0000355!2.61e-08!57;CL:0000236!3.65e-08!14;CL:0000034!3.84e-07!444;CL:0000359!7.04e-07!32;CL:0000945!7.64e-07!24;CL:0000826!7.64e-07!24 | |ontology_enrichment_celltype=CL:0000012!3.40e-33!682;CL:0000548!5.27e-31!679;CL:0000004!5.27e-31!679;CL:0000255!5.27e-31!679;CL:0000003!2.99e-30!722;CL:0000144!1.51e-26!625;CL:0002371!1.54e-22!591;CL:0000063!5.47e-13!578;CL:0000220!7.34e-13!246;CL:0002321!1.37e-12!248;CL:0000183!1.06e-10!59;CL:0000542!1.83e-10!53;CL:0000051!1.83e-10!53;CL:0000838!2.48e-10!52;CL:0000222!2.67e-10!119;CL:0000066!2.32e-09!254;CL:0000393!5.24e-09!60;CL:0000211!5.24e-09!60;CL:0000187!5.37e-09!54;CL:0000192!1.61e-08!42;CL:0000514!1.61e-08!42;CL:0000680!2.61e-08!57;CL:0000056!2.61e-08!57;CL:0000355!2.61e-08!57;CL:0000236!3.65e-08!14;CL:0000034!3.84e-07!444;CL:0000359!7.04e-07!32;CL:0000945!7.64e-07!24;CL:0000826!7.64e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000236;2.43e-08;13!CL:0000542;1.93e-07;53!CL:0000945;7.71e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.19e-12,250;CL:0000542,1.83e-10,53;CL:0000051,1.83e-10,53;CL:0000838,2.48e-10,52;CL:0000222,2.58e-10,121;CL:0000066,1.93e-09,253;CL:0000393,8.59e-09,61;CL:0000211,8.59e-09,61;CL:0000187,9.18e-09,55;CL:0000192,2.98e-08,43;CL:0000514,2.98e-08,43;CL:0000236,3.65e-08,14;CL:0000680,4.20e-08,58;CL:0000056,4.20e-08,58;CL:0000355,4.20e-08,58;CL:0000034,6.59e-07,441;CL:0000359,7.04e-07,32;CL:0000945,7.64e-07,24;CL:0000826,7.64e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;1.93e-07;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!3.09e-09!82;UBERON:0004290!7.02e-09!70;UBERON:0001134!1.02e-07!61;UBERON:0002036!1.02e-07!61;UBERON:0003082!1.02e-07!61;UBERON:0000490!1.37e-07!138;UBERON:0000914!1.47e-07!83;UBERON:0002329!1.47e-07!83;UBERON:0003077!1.47e-07!83;UBERON:0003059!1.47e-07!83;UBERON:0007282!1.47e-07!83;UBERON:0009618!1.47e-07!83;UBERON:0007285!1.47e-07!83;UBERON:0001637!5.08e-07!42;UBERON:0003509!5.08e-07!42;UBERON:0004572!5.08e-07!42;UBERON:0002049!6.31e-07!79;UBERON:0007798!6.31e-07!79;UBERON:0000055!7.41e-07!69;UBERON:0002385!8.25e-07!63;UBERON:0001015!8.25e-07!63;UBERON:0000383!8.25e-07!63 | |ontology_enrichment_uberon=UBERON:0000486!3.09e-09!82;UBERON:0004290!7.02e-09!70;UBERON:0001134!1.02e-07!61;UBERON:0002036!1.02e-07!61;UBERON:0003082!1.02e-07!61;UBERON:0000490!1.37e-07!138;UBERON:0000914!1.47e-07!83;UBERON:0002329!1.47e-07!83;UBERON:0003077!1.47e-07!83;UBERON:0003059!1.47e-07!83;UBERON:0007282!1.47e-07!83;UBERON:0009618!1.47e-07!83;UBERON:0007285!1.47e-07!83;UBERON:0001637!5.08e-07!42;UBERON:0003509!5.08e-07!42;UBERON:0004572!5.08e-07!42;UBERON:0002049!6.31e-07!79;UBERON:0007798!6.31e-07!79;UBERON:0000055!7.41e-07!69;UBERON:0002385!8.25e-07!63;UBERON:0001015!8.25e-07!63;UBERON:0000383!8.25e-07!63 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.17e-10,78;UBERON:0000486,4.60e-09,83;UBERON:0002329,1.08e-08,71;UBERON:0003059,1.08e-08,71;UBERON:0007282,1.08e-08,71;UBERON:0004290,1.08e-08,71;UBERON:0009618,1.08e-08,71;UBERON:0000490,1.47e-08,148;UBERON:0003077,3.96e-08,72;UBERON:0007285,3.96e-08,72;UBERON:0007524,4.73e-08,73;UBERON:0001134,1.56e-07,62;UBERON:0002036,1.56e-07,62;UBERON:0003082,1.56e-07,62;UBERON:0002049,2.67e-07,78;UBERON:0007798,2.67e-07,78;UBERON:0000055,2.95e-07,68;UBERON:0001637,5.08e-07,42;UBERON:0003509,5.08e-07,42;UBERON:0004572,5.08e-07,42 | |||
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| ||
|short_description=p1@RPS5 | |short_description=p1@RPS5 | ||
}} | }} |
Latest revision as of 07:36, 20 September 2015
Short description: | p1@RPS5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPS5_5end |
Coexpression cluster: | C3829_Alveolar_Osteoblast_Mesenchymal_CD19_CD8_Bronchial_CD4 |
Association with transcript: | 0bp_to_ENST00000196551, NM_001009, uc002qsn.2_5end |
EntrezGene: | RPS5 |
HGNC: | 10426 |
UniProt: | P46782 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.19e-12 | 250 |
lymphocyte | 1.83e-10 | 53 |
common lymphoid progenitor | 1.83e-10 | 53 |
lymphoid lineage restricted progenitor cell | 2.48e-10 | 52 |
mesodermal cell | 2.58e-10 | 121 |
epithelial cell | 1.93e-09 | 253 |
electrically responsive cell | 8.59e-09 | 61 |
electrically active cell | 8.59e-09 | 61 |
muscle cell | 9.18e-09 | 55 |
smooth muscle cell | 2.98e-08 | 43 |
smooth muscle myoblast | 2.98e-08 | 43 |
B cell | 3.65e-08 | 14 |
muscle precursor cell | 4.20e-08 | 58 |
myoblast | 4.20e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.20e-08 | 58 |
stem cell | 6.59e-07 | 441 |
vascular associated smooth muscle cell | 7.04e-07 | 32 |
lymphocyte of B lineage | 7.64e-07 | 24 |
pro-B cell | 7.64e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.17e-10 | 78 |
multilaminar epithelium | 4.60e-09 | 83 |
somite | 1.08e-08 | 71 |
presomitic mesoderm | 1.08e-08 | 71 |
presumptive segmental plate | 1.08e-08 | 71 |
dermomyotome | 1.08e-08 | 71 |
trunk paraxial mesoderm | 1.08e-08 | 71 |
unilaminar epithelium | 1.47e-08 | 148 |
paraxial mesoderm | 3.96e-08 | 72 |
presumptive paraxial mesoderm | 3.96e-08 | 72 |
dense mesenchyme tissue | 4.73e-08 | 73 |
skeletal muscle tissue | 1.56e-07 | 62 |
striated muscle tissue | 1.56e-07 | 62 |
myotome | 1.56e-07 | 62 |
vasculature | 2.67e-07 | 78 |
vascular system | 2.67e-07 | 78 |
vessel | 2.95e-07 | 68 |
artery | 5.08e-07 | 42 |
arterial blood vessel | 5.08e-07 | 42 |
arterial system | 5.08e-07 | 42 |