FFCP PHASE1:Hg19::chr1:19283163..19283175,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:19283163..19283175,-
|short_description=p2@IFFO2
|description=CAGE_peak_2_at_IFFO2_5end
|association_with_transcript=4bp_to_ENST00000455833_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=126917 | |EntrezGene=126917 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27006 | |HGNC=27006 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TF58 | |UniProt=Q5TF58 | ||
|association_with_transcript=4bp_to_ENST00000455833_5end | |||
|cluster_id=chr1:19283163..19283175,- | |||
|description=CAGE_peak_2_at_IFFO2_5end | |||
|id=chr1:19283163..19283175,- | |||
|ontology_enrichment_celltype=CL:0000791!3.94e-10!18;CL:0000789!3.94e-10!18;CL:0002420!3.94e-10!18;CL:0002419!3.94e-10!18;CL:0000790!3.94e-10!18;CL:0000625!3.77e-07!11;CL:0000084!4.60e-07!25;CL:0000827!4.60e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.79e-10;18!CL:0000789;2.79e-10;18!CL:0002419;2.79e-10;18!CL:0000084;2.68e-07;25!CL:0000625;2.96e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.65e-10,18;CL:0000789,3.65e-10,18;CL:0002420,3.65e-10,18;CL:0002419,3.65e-10,18;CL:0000790,3.65e-10,18;CL:0000625,3.59e-07,11;CL:0000084,5.70e-07,25;CL:0000827,5.70e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000790;2.79e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.75e-17!115;UBERON:0001049!5.08e-13!57;UBERON:0005068!5.08e-13!57;UBERON:0006241!5.08e-13!57;UBERON:0007135!5.08e-13!57;UBERON:0003075!7.12e-11!86;UBERON:0007284!7.12e-11!86;UBERON:0002616!7.43e-10!59;UBERON:0003080!5.02e-09!42;UBERON:0002346!5.48e-09!90;UBERON:0000153!5.86e-09!129;UBERON:0007811!5.86e-09!129;UBERON:0002780!1.47e-08!41;UBERON:0001890!1.47e-08!41;UBERON:0006240!1.47e-08!41;UBERON:0003056!2.21e-08!61;UBERON:0000033!2.76e-08!123;UBERON:0001893!5.44e-08!34;UBERON:0002020!8.29e-08!34;UBERON:0003528!8.29e-08!34;UBERON:0002791!1.26e-07!33;UBERON:0001869!1.99e-07!32;UBERON:0000955!3.08e-07!69;UBERON:0006238!3.08e-07!69;UBERON:0004121!3.73e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;6.06e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.20e-17,114;UBERON:0010371,1.09e-12,104;UBERON:0001049,1.56e-12,56;UBERON:0005068,1.56e-12,56;UBERON:0006241,1.56e-12,56;UBERON:0007135,1.56e-12,56;UBERON:0000073,1.78e-11,53;UBERON:0002616,1.78e-11,53;UBERON:0003075,1.07e-10,82;UBERON:0007284,1.07e-10,82;UBERON:0002346,9.27e-09,86;UBERON:0002780,1.49e-08,41;UBERON:0001890,1.49e-08,41;UBERON:0003080,1.49e-08,41;UBERON:0006240,1.49e-08,41;UBERON:0001893,5.56e-08,34;UBERON:0003056,6.99e-08,61;UBERON:0003528,8.47e-08,34;UBERON:0002020,8.47e-08,34;UBERON:0001869,2.04e-07,32;UBERON:0002791,2.55e-07,32;UBERON:0000955,6.38e-07,68;UBERON:0006238,6.38e-07,68;UBERON:0010314,6.86e-07,132 | |||
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| ||
|short_description=p2@IFFO2 | |||
}} | }} |
Latest revision as of 10:43, 19 September 2015
Short description: | p2@IFFO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IFFO2_5end |
Coexpression cluster: | NA |
Association with transcript: | 4bp_to_ENST00000455833_5end |
EntrezGene: | IFFO2 |
HGNC: | 27006 |
UniProt: | Q5TF58 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.65e-10 | 18 |
alpha-beta T cell | 3.65e-10 | 18 |
immature T cell | 3.65e-10 | 18 |
mature T cell | 3.65e-10 | 18 |
immature alpha-beta T cell | 3.65e-10 | 18 |
CD8-positive, alpha-beta T cell | 3.59e-07 | 11 |
T cell | 5.70e-07 | 25 |
pro-T cell | 5.70e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.20e-17 | 114 |
ecto-epithelium | 1.09e-12 | 104 |
neural tube | 1.56e-12 | 56 |
neural rod | 1.56e-12 | 56 |
future spinal cord | 1.56e-12 | 56 |
neural keel | 1.56e-12 | 56 |
regional part of nervous system | 1.78e-11 | 53 |
regional part of brain | 1.78e-11 | 53 |
neural plate | 1.07e-10 | 82 |
presumptive neural plate | 1.07e-10 | 82 |
neurectoderm | 9.27e-09 | 86 |
regional part of forebrain | 1.49e-08 | 41 |
forebrain | 1.49e-08 | 41 |
anterior neural tube | 1.49e-08 | 41 |
future forebrain | 1.49e-08 | 41 |
telencephalon | 5.56e-08 | 34 |
pre-chordal neural plate | 6.99e-08 | 61 |
brain grey matter | 8.47e-08 | 34 |
gray matter | 8.47e-08 | 34 |
cerebral hemisphere | 2.04e-07 | 32 |
regional part of telencephalon | 2.55e-07 | 32 |
brain | 6.38e-07 | 68 |
future brain | 6.38e-07 | 68 |
structure with developmental contribution from neural crest | 6.86e-07 | 132 |