FFCP PHASE1:Hg19::chr14:79746061..79746074,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9369 | |EntrezGene=9369 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8010 | |HGNC=8010 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HDB5 | |UniProt=Q9HDB5 | ||
|association_with_transcript=-174bp_to_ENST00000428277_5end | |association_with_transcript=-174bp_to_ENST00000428277_5end | ||
|cluster_id=chr14:79746061..79746074,+ | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_9_at_NRXN3_5end | |description=CAGE_peak_9_at_NRXN3_5end | ||
|id=chr14:79746061..79746074,+ | |id=chr14:79746061..79746074,+ | ||
|ontology_enrichment_celltype=CL:0000077!2.27e-09!19 | |ontology_enrichment_celltype=CL:0000077!2.27e-09!19 | ||
|ontology_enrichment_celltype_v019=CL:0000511;1.65e-16;1!CL:0002625;1.65e-16;1!CL:0000222;1.65e-16;1!CL:0002568;1.65e-16;1!CL:0000216;1.65e-16;1!CL:0000077;8.58e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002568,8.86e-17,1;CL:0000511,1.04e-16,1;CL:0002625,1.04e-16,1;CL:0000216,1.04e-16,1;CL:0000077,9.00e-08,19 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.95e-47;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;2.23e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.38e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.69e-14!115;UBERON:0004733!2.37e-10!12;UBERON:0002028!2.37e-10!12;UBERON:0007277!2.37e-10!12;UBERON:0003076!4.03e-10!15;UBERON:0003057!4.03e-10!15;UBERON:0004732!1.98e-09!13;UBERON:0003075!1.62e-08!86;UBERON:0007284!1.62e-08!86;UBERON:0002680!1.88e-08!9;UBERON:0001895!1.88e-08!9;UBERON:0010092!1.88e-08!9;UBERON:0005743!2.13e-08!86;UBERON:0002616!2.95e-08!59;UBERON:0001017!3.38e-08!82;UBERON:0002346!7.22e-08!90;UBERON:0000955!7.54e-08!69;UBERON:0006238!7.54e-08!69;UBERON:0000073!7.80e-08!94;UBERON:0001016!7.80e-08!94;UBERON:0001049!1.10e-07!57;UBERON:0005068!1.10e-07!57;UBERON:0006241!1.10e-07!57;UBERON:0007135!1.10e-07!57 | |ontology_enrichment_uberon=UBERON:0007023!1.69e-14!115;UBERON:0004733!2.37e-10!12;UBERON:0002028!2.37e-10!12;UBERON:0007277!2.37e-10!12;UBERON:0003076!4.03e-10!15;UBERON:0003057!4.03e-10!15;UBERON:0004732!1.98e-09!13;UBERON:0003075!1.62e-08!86;UBERON:0007284!1.62e-08!86;UBERON:0002680!1.88e-08!9;UBERON:0001895!1.88e-08!9;UBERON:0010092!1.88e-08!9;UBERON:0005743!2.13e-08!86;UBERON:0002616!2.95e-08!59;UBERON:0001017!3.38e-08!82;UBERON:0002346!7.22e-08!90;UBERON:0000955!7.54e-08!69;UBERON:0006238!7.54e-08!69;UBERON:0000073!7.80e-08!94;UBERON:0001016!7.80e-08!94;UBERON:0001049!1.10e-07!57;UBERON:0005068!1.10e-07!57;UBERON:0006241!1.10e-07!57;UBERON:0007135!1.10e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0002680;5.74e-28;9!UBERON:0001895;5.74e-28;9!UBERON:0002037;4.91e-24;6!UBERON:0004733;4.39e-21;12!UBERON:0002028;4.39e-21;12!UBERON:0004732;1.71e-19;13!UBERON:0001136;1.65e-16;1!UBERON:0001343;1.65e-16;1!UBERON:0004910;1.65e-16;1!UBERON:0004813;1.65e-16;1!UBERON:0004909;6.42e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002680,5.75e-28,9;UBERON:0001895,5.75e-28,9;UBERON:0010092,5.75e-28,9;UBERON:0002037,4.91e-24,6;UBERON:0006215,4.91e-24,6;UBERON:0004733,4.39e-21,12;UBERON:0002028,4.39e-21,12;UBERON:0007277,4.39e-21,12;UBERON:0004732,1.71e-19,13;UBERON:0003076,6.06e-17,15;UBERON:0003057,6.06e-17,15;UBERON:0001136,1.04e-16,1;UBERON:0001343,1.04e-16,1;UBERON:0004910,1.04e-16,1;UBERON:0005154,1.04e-16,1;UBERON:0005295,1.04e-16,1;UBERON:0004813,1.04e-16,1;UBERON:0005297,1.04e-16,1;UBERON:0005294,1.04e-16,1;UBERON:0010141,1.04e-16,1;UBERON:0005891,1.04e-16,1;UBERON:0004909,5.08e-09,2 | |||
|phase1_expression=0,0.214100523890983,1.12763523276777,0,0.893922188854576,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68053230485111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0.664225598535437,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0.896974044789907,0,0.482561763430822,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0.632758849437452,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0.405820753925408,0,0.563391205064483,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0.260427761085233,0,0,0,0,0,0,0,0.347249989866585,0,0,9.15490417902499,6.7453348558047,5.31985714116385,0.438770794307945,0,0,0.307801034015188,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0.234264445725339,0,0,0,0.394584402849391,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,0,0,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.18628920882415,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,1.06336685823198,0,0.450772826991655,1.52322084867518,0,0,0,0,1.19428766609585,0,0,0,1.26184898228651,0.192619830407303,0,0,0.453411851024545,0.231522474323834,0,1.07453304648892,0,1.09642024789354,0.176689145945881,0.38582807654183,0,0,0,0.911579868532147,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0.548257766857182,0,0,0,0,0,0,0.227662191351298,0,0,0,2.92269851800376,0,0,0,0.313972371402056,0.157115589916002,0,0,0.215927591218621,0,0.285906176706625,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0.154348316215889,0.437119121007915,0,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0.23806443146374,0,0,0,0,0,0,0,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0.366724332548599,0,0,0,0 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|phase1_expression=0,0.214100523890983,1.12763523276777,0,0.893922188854576,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68053230485111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0.664225598535437,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0.896974044789907,0,0.482561763430822,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0.632758849437452,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0.405820753925408,0,0.563391205064483,0,0.0982490410131212,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0.260427761085233,0,0,0,0,0,0,0,0.347249989866585,0,0,9.15490417902499,6.7453348558047,5.31985714116385,0.438770794307945,0,0,0.307801034015188,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0.234264445725339,0,0,0,0.394584402849391,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,0,0,0,0,0.189932387867636,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0.106787412567695,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.18628920882415,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,1.06336685823198,0,0.450772826991655,1.52322084867518,0,0,0,0,1.19428766609585,0,0,0,1.26184898228651,0.192619830407303,0,0,0.453411851024545,0.231522474323834,0,1.07453304648892,0,1.09642024789354,0.176689145945881,0.38582807654183,0,0,0,0.911579868532147,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0.548257766857182,0,0,0,0,0,0,0.227662191351298,0,0,0,2.92269851800376,0,0,0,0.313972371402056,0.157115589916002,0,0,0.215927591218621,0,0.285906176706625,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0.154348316215889,0.437119121007915,0,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0.23806443146374,0,0,0,0,0,0,0,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0.366724332548599,0,0,0,0 | ||
|short_description=p9@NRXN3 | |short_description=p9@NRXN3 | ||
}} | }} |
Latest revision as of 07:03, 16 September 2015
Short description: | p9@NRXN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_NRXN3_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -174bp_to_ENST00000428277_5end |
EntrezGene: | NRXN3 |
HGNC: | 8010 |
UniProt: | Q9HDB5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of Wharton's jelly | 8.86e-17 | 1 |
androgen binding protein secreting cell | 1.04e-16 | 1 |
seminiferous tubule epithelial cell | 1.04e-16 | 1 |
Sertoli cell | 1.04e-16 | 1 |
mesothelial cell | 9.00e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 5.75e-28 | 9 |
metencephalon | 5.75e-28 | 9 |
future metencephalon | 5.75e-28 | 9 |
cerebellum | 4.91e-24 | 6 |
rhombic lip | 4.91e-24 | 6 |
segmental subdivision of hindbrain | 4.39e-21 | 12 |
hindbrain | 4.39e-21 | 12 |
presumptive hindbrain | 4.39e-21 | 12 |
segmental subdivision of nervous system | 1.71e-19 | 13 |
posterior neural tube | 6.06e-17 | 15 |
chordal neural plate | 6.06e-17 | 15 |
mesothelium | 1.04e-16 | 1 |
seminiferous tubule of testis | 1.04e-16 | 1 |
epithelium of male gonad | 1.04e-16 | 1 |
epithelial cord | 1.04e-16 | 1 |
sex cord | 1.04e-16 | 1 |
seminiferous tubule epithelium | 1.04e-16 | 1 |
testis sex cord | 1.04e-16 | 1 |
genital ridge | 1.04e-16 | 1 |
primitive sex cord of indifferent gonad | 1.04e-16 | 1 |
coelomic epithelium | 1.04e-16 | 1 |
epithelium of gonad | 5.08e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.38e-10 | 14 |