FFCP PHASE1:Hg19::chr4:125341479..125341498,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:125341479..125341498,- | |||
|coexpression_cluster_id=C655 | |coexpression_cluster_id=C655 | ||
|description=CAGE_peak_at_chr4:125341479..125341498,- | |description=CAGE_peak_at_chr4:125341479..125341498,- | ||
|id=chr4:125341479..125341498,- | |id=chr4:125341479..125341498,- | ||
|ontology_enrichment_celltype=CL:0000244!5.73e-17!4;CL:0000731!5.73e-17!4;CL:0002541!3.12e-10!3;CL:0000511!1.75e-08!1;CL:0002625!1.75e-08!1;CL:0000216!1.75e-08!1;CL:1001319!2.50e-08!1;CL:1000600!2.50e-08!1;CL:0000319!2.69e-08!1 | |ontology_enrichment_celltype=CL:0000244!5.73e-17!4;CL:0000731!5.73e-17!4;CL:0002541!3.12e-10!3;CL:0000511!1.75e-08!1;CL:0002625!1.75e-08!1;CL:0000216!1.75e-08!1;CL:1001319!2.50e-08!1;CL:1000600!2.50e-08!1;CL:0000319!2.69e-08!1 | ||
|ontology_enrichment_celltype_v019=CL:0000244;3.10e-45;4!CL:0000731;3.10e-45;4!CL:0000511;8.53e-21;1!CL:0002625;8.53e-21;1!CL:0000216;8.53e-21;1!CL:0002231;7.02e-08;3!CL:0002541;8.02e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,3.10e-45,4;CL:0000731,3.10e-45,4;CL:0000511,7.72e-21,1;CL:0002625,7.72e-21,1;CL:0000216,7.72e-21,1;CL:0002231,7.26e-08,3;CL:0002541,8.29e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060085!2.02e-08!1;DOID:3165!2.02e-08!1;DOID:0060121!2.02e-08!1;DOID:2438!2.02e-08!1;DOID:4418!2.02e-08!1;DOID:3030!2.69e-08!1 | |ontology_enrichment_disease=DOID:0060085!2.02e-08!1;DOID:3165!2.02e-08!1;DOID:0060121!2.02e-08!1;DOID:2438!2.02e-08!1;DOID:4418!2.02e-08!1;DOID:3030!2.69e-08!1 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000365!2.99e-23!5;UBERON:0005910!2.05e-19!6;UBERON:0004122!1.93e-16!15;UBERON:0001255!3.61e-15!2;UBERON:0001556!3.61e-15!2;UBERON:0000162!2.00e-12!14;UBERON:0001353!2.00e-12!14;UBERON:0000163!2.00e-12!14;UBERON:0006866!2.00e-12!14;UBERON:0000164!2.00e-12!14;UBERON:0000931!2.00e-12!14;UBERON:0000476!3.12e-10!3;UBERON:0000920!3.12e-10!3;UBERON:0006554!3.26e-09!44;UBERON:0001046!4.22e-09!19;UBERON:0001008!5.53e-09!45;UBERON:0001136!1.75e-08!1;UBERON:0001343!1.75e-08!1;UBERON:0004910!1.75e-08!1;UBERON:0005154!1.75e-08!1;UBERON:0005295!1.75e-08!1;UBERON:0004813!1.75e-08!1;UBERON:0005297!1.75e-08!1;UBERON:0005294!1.75e-08!1;UBERON:0010141!1.75e-08!1;UBERON:0005891!1.75e-08!1;UBERON:0004645!2.50e-08!1;UBERON:0001256!2.50e-08!1;UBERON:0001259!2.50e-08!1;UBERON:0005156!4.71e-08!59;UBERON:0000990!4.71e-08!59;UBERON:0002336!7.16e-08!1;UBERON:0001018!7.16e-08!1;UBERON:0002473!7.16e-08!1;UBERON:0005340!7.16e-08!1;UBERON:0002316!7.16e-08!1;UBERON:0003544!7.16e-08!1;UBERON:0001020!7.16e-08!1;UBERON:0005970!7.16e-08!1;UBERON:0002437!7.16e-08!1;UBERON:0003101!9.30e-08!22;UBERON:0000079!9.30e-08!22 | |ontology_enrichment_uberon=UBERON:0000365!2.99e-23!5;UBERON:0005910!2.05e-19!6;UBERON:0004122!1.93e-16!15;UBERON:0001255!3.61e-15!2;UBERON:0001556!3.61e-15!2;UBERON:0000162!2.00e-12!14;UBERON:0001353!2.00e-12!14;UBERON:0000163!2.00e-12!14;UBERON:0006866!2.00e-12!14;UBERON:0000164!2.00e-12!14;UBERON:0000931!2.00e-12!14;UBERON:0000476!3.12e-10!3;UBERON:0000920!3.12e-10!3;UBERON:0006554!3.26e-09!44;UBERON:0001046!4.22e-09!19;UBERON:0001008!5.53e-09!45;UBERON:0001136!1.75e-08!1;UBERON:0001343!1.75e-08!1;UBERON:0004910!1.75e-08!1;UBERON:0005154!1.75e-08!1;UBERON:0005295!1.75e-08!1;UBERON:0004813!1.75e-08!1;UBERON:0005297!1.75e-08!1;UBERON:0005294!1.75e-08!1;UBERON:0010141!1.75e-08!1;UBERON:0005891!1.75e-08!1;UBERON:0004645!2.50e-08!1;UBERON:0001256!2.50e-08!1;UBERON:0001259!2.50e-08!1;UBERON:0005156!4.71e-08!59;UBERON:0000990!4.71e-08!59;UBERON:0002336!7.16e-08!1;UBERON:0001018!7.16e-08!1;UBERON:0002473!7.16e-08!1;UBERON:0005340!7.16e-08!1;UBERON:0002316!7.16e-08!1;UBERON:0003544!7.16e-08!1;UBERON:0001020!7.16e-08!1;UBERON:0005970!7.16e-08!1;UBERON:0002437!7.16e-08!1;UBERON:0003101!9.30e-08!22;UBERON:0000079!9.30e-08!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000365;2.26e-36;5!UBERON:0005910;1.86e-30;6!UBERON:0001136;8.53e-21;1!UBERON:0001343;8.53e-21;1!UBERON:0004910;8.53e-21;1!UBERON:0004813;8.53e-21;1!UBERON:0000486;1.29e-15;12!UBERON:0001255;3.52e-11;2!UBERON:0001556;3.52e-11;2!UBERON:0004909;4.30e-11;2!UBERON:0006554;5.57e-11;30!UBERON:0001008;5.57e-11;30!UBERON:0003124;8.02e-08;3!UBERON:0000920;8.02e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,2.26e-36,5;UBERON:0005910,1.86e-30,6;UBERON:0001136,7.72e-21,1;UBERON:0001343,7.72e-21,1;UBERON:0004910,7.72e-21,1;UBERON:0005154,7.72e-21,1;UBERON:0005295,7.72e-21,1;UBERON:0004813,7.72e-21,1;UBERON:0005297,7.72e-21,1;UBERON:0005294,7.72e-21,1;UBERON:0010141,7.72e-21,1;UBERON:0005891,7.72e-21,1;UBERON:0004122,1.93e-12,15;UBERON:0001255,3.35e-11,2;UBERON:0001556,3.35e-11,2;UBERON:0004909,4.09e-11,2;UBERON:0006554,1.09e-10,47;UBERON:0001008,1.82e-10,48;UBERON:0000920,8.29e-08,3;UBERON:0003064,6.07e-07,28 | |||
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|short_description=p@chr4:125341479..125341498,- | |short_description=p@chr4:125341479..125341498,- | ||
}} | }} |
Latest revision as of 01:27, 30 July 2015
Short description: | p@chr4:125341479..125341498, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:125341479..125341498, - |
Coexpression cluster: | C655_mesothelioma_Mesothelial_hepatoma_cholangiocellular_Urothelial_glioma_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 3.10e-45 | 4 |
urothelial cell | 3.10e-45 | 4 |
androgen binding protein secreting cell | 7.72e-21 | 1 |
seminiferous tubule epithelial cell | 7.72e-21 | 1 |
Sertoli cell | 7.72e-21 | 1 |
epithelial cell of prostate | 7.26e-08 | 3 |
chorionic membrane mesenchymal stem cell | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
urothelium | 2.26e-36 | 5 |
transitional epithelium | 1.86e-30 | 6 |
mesothelium | 7.72e-21 | 1 |
seminiferous tubule of testis | 7.72e-21 | 1 |
epithelium of male gonad | 7.72e-21 | 1 |
epithelial cord | 7.72e-21 | 1 |
sex cord | 7.72e-21 | 1 |
seminiferous tubule epithelium | 7.72e-21 | 1 |
testis sex cord | 7.72e-21 | 1 |
genital ridge | 7.72e-21 | 1 |
primitive sex cord of indifferent gonad | 7.72e-21 | 1 |
coelomic epithelium | 7.72e-21 | 1 |
genitourinary system | 1.93e-12 | 15 |
urinary bladder | 3.35e-11 | 2 |
lower urinary tract | 3.35e-11 | 2 |
epithelium of gonad | 4.09e-11 | 2 |
urinary system structure | 1.09e-10 | 47 |
renal system | 1.82e-10 | 48 |
egg chorion | 8.29e-08 | 3 |
intermediate mesoderm | 6.07e-07 | 28 |