FFCP PHASE1:Hg19::chr14:21538220..21538243,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55701 | |EntrezGene=55701 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25516 | |HGNC=25516 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TER5 | |UniProt=Q8TER5 | ||
|association_with_transcript=-185bp_to_ENST00000298694_5end | |association_with_transcript=-185bp_to_ENST00000298694_5end | ||
|cluster_id=chr14:21538220..21538243,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_4_at_ARHGEF40_5end | |description=CAGE_peak_4_at_ARHGEF40_5end | ||
|id=chr14:21538220..21538243,+ | |id=chr14:21538220..21538243,+ | ||
|ontology_enrichment_celltype=CL:0000766!5.69e-25!76;CL:0000557!4.61e-22!71;CL:0002057!4.96e-22!42;CL:0000860!6.85e-21!45;CL:0002009!6.62e-20!65;CL:0002194!3.35e-19!63;CL:0000576!3.35e-19!63;CL:0000040!3.35e-19!63;CL:0000559!3.35e-19!63;CL:0000839!4.85e-19!70;CL:0000763!3.32e-18!112;CL:0000049!3.32e-18!112;CL:0000034!3.05e-07!444 | |ontology_enrichment_celltype=CL:0000766!5.69e-25!76;CL:0000557!4.61e-22!71;CL:0002057!4.96e-22!42;CL:0000860!6.85e-21!45;CL:0002009!6.62e-20!65;CL:0002194!3.35e-19!63;CL:0000576!3.35e-19!63;CL:0000040!3.35e-19!63;CL:0000559!3.35e-19!63;CL:0000839!4.85e-19!70;CL:0000763!3.32e-18!112;CL:0000049!3.32e-18!112;CL:0000034!3.05e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.38e-31;33!CL:0002057;1.38e-31;33!CL:0000473;2.92e-26;39!CL:0000234;2.92e-26;39!CL:0000576;2.83e-17;48!CL:0000766;8.41e-17;69!CL:0000763;1.34e-09;100!CL:0000094;2.69e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.10e-34,72;CL:0000473,3.33e-34,48;CL:0000234,3.33e-34,48;CL:0000860,9.84e-34,42;CL:0002057,9.84e-34,42;CL:0000557,1.35e-30,67;CL:0000763,2.70e-27,108;CL:0000049,2.70e-27,108;CL:0000839,4.71e-27,66;CL:0002009,1.88e-26,61;CL:0002194,2.59e-25,59;CL:0000576,2.59e-25,59;CL:0000040,2.59e-25,59;CL:0000559,2.59e-25,59;CL:0000738,1.62e-11,136;CL:0000037,1.73e-11,168;CL:0002032,4.03e-11,161;CL:0000837,4.03e-11,161;CL:0000988,6.35e-11,177;CL:0000034,1.72e-10,441;CL:0000048,1.66e-09,427;CL:0000723,6.67e-09,433;CL:0002031,9.25e-09,120;CL:0002320,1.16e-08,361;CL:0000219,2.78e-08,386;CL:0000134,6.60e-08,354;CL:0000094,2.12e-07,8;CL:0002087,4.34e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;1.23e-24;42!CL:0000049;6.85e-09;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.40e-23!102;UBERON:0003061!2.40e-23!102;UBERON:0002371!7.12e-21!80;UBERON:0001474!9.21e-21!86;UBERON:0004765!9.23e-21!101;UBERON:0001434!9.23e-21!101;UBERON:0002204!6.73e-20!167;UBERON:0002193!2.09e-18!112;UBERON:0002405!1.78e-12!115;UBERON:0003081!1.63e-10!216 | |ontology_enrichment_uberon=UBERON:0002390!2.40e-23!102;UBERON:0003061!2.40e-23!102;UBERON:0002371!7.12e-21!80;UBERON:0001474!9.21e-21!86;UBERON:0004765!9.23e-21!101;UBERON:0001434!9.23e-21!101;UBERON:0002204!6.73e-20!167;UBERON:0002193!2.09e-18!112;UBERON:0002405!1.78e-12!115;UBERON:0003081!1.63e-10!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.17e-07;15!UBERON:0000179;2.17e-07;15!UBERON:0000463;2.17e-07;15!UBERON:0002390;4.82e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.49e-34,98;UBERON:0003061,5.49e-34,98;UBERON:0002371,3.37e-29,76;UBERON:0004765,3.46e-29,90;UBERON:0001474,5.26e-29,82;UBERON:0002193,1.61e-28,108;UBERON:0001434,7.41e-28,100;UBERON:0002204,2.16e-23,167;UBERON:0002405,2.01e-22,93;UBERON:0003081,3.91e-15,203;UBERON:0000926,2.12e-09,315;UBERON:0004120,2.12e-09,315;UBERON:0006603,2.12e-09,315;UBERON:0002384,7.47e-09,371;UBERON:0000178,3.48e-07,15;UBERON:0000179,3.48e-07,15;UBERON:0000463,3.48e-07,15 | |||
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| ||
|short_description=p4@ARHGEF40 | |short_description=p4@ARHGEF40 | ||
}} | }} |
Latest revision as of 01:43, 19 September 2015
Short description: | p4@ARHGEF40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ARHGEF40_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -185bp_to_ENST00000298694_5end |
EntrezGene: | ARHGEF40 |
HGNC: | 25516 |
UniProt: | Q8TER5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.10e-34 | 72 |
defensive cell | 3.33e-34 | 48 |
phagocyte | 3.33e-34 | 48 |
classical monocyte | 9.84e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.84e-34 | 42 |
granulocyte monocyte progenitor cell | 1.35e-30 | 67 |
myeloid cell | 2.70e-27 | 108 |
common myeloid progenitor | 2.70e-27 | 108 |
myeloid lineage restricted progenitor cell | 4.71e-27 | 66 |
macrophage dendritic cell progenitor | 1.88e-26 | 61 |
monopoietic cell | 2.59e-25 | 59 |
monocyte | 2.59e-25 | 59 |
monoblast | 2.59e-25 | 59 |
promonocyte | 2.59e-25 | 59 |
leukocyte | 1.62e-11 | 136 |
hematopoietic stem cell | 1.73e-11 | 168 |
hematopoietic oligopotent progenitor cell | 4.03e-11 | 161 |
hematopoietic multipotent progenitor cell | 4.03e-11 | 161 |
hematopoietic cell | 6.35e-11 | 177 |
stem cell | 1.72e-10 | 441 |
multi fate stem cell | 1.66e-09 | 427 |
somatic stem cell | 6.67e-09 | 433 |
hematopoietic lineage restricted progenitor cell | 9.25e-09 | 120 |
connective tissue cell | 1.16e-08 | 361 |
motile cell | 2.78e-08 | 386 |
mesenchymal cell | 6.60e-08 | 354 |
granulocyte | 2.12e-07 | 8 |
nongranular leukocyte | 4.34e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.49e-34 | 98 |
blood island | 5.49e-34 | 98 |
bone marrow | 3.37e-29 | 76 |
skeletal element | 3.46e-29 | 90 |
bone element | 5.26e-29 | 82 |
hemolymphoid system | 1.61e-28 | 108 |
skeletal system | 7.41e-28 | 100 |
musculoskeletal system | 2.16e-23 | 167 |
immune system | 2.01e-22 | 93 |
lateral plate mesoderm | 3.91e-15 | 203 |
mesoderm | 2.12e-09 | 315 |
mesoderm-derived structure | 2.12e-09 | 315 |
presumptive mesoderm | 2.12e-09 | 315 |
connective tissue | 7.47e-09 | 371 |
blood | 3.48e-07 | 15 |
haemolymphatic fluid | 3.48e-07 | 15 |
organism substance | 3.48e-07 | 15 |