FFCP PHASE1:Hg19::chr2:109065634..109065692,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9648 | |EntrezGene=9648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23218 | |HGNC=23218 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IWJ2,B8ZZA5 | |UniProt=Q8IWJ2,B8ZZA5 | ||
|association_with_transcript=0bp_to_ENST00000309863,ENST00000409821,ENST00000467566,ENST00000478207_5end | |association_with_transcript=0bp_to_ENST00000309863,ENST00000409821,ENST00000467566,ENST00000478207_5end | ||
|cluster_id=chr2:109065634..109065692,+ | |||
|coexpression_cluster_id=C176 | |coexpression_cluster_id=C176 | ||
|description=CAGE_peak_1_at_GCC2_5end | |description=CAGE_peak_1_at_GCC2_5end | ||
|id=chr2:109065634..109065692,+ | |id=chr2:109065634..109065692,+ | ||
|ontology_enrichment_celltype=CL:0000738!2.79e-18!140;CL:0000037!4.65e-14!172;CL:0000566!4.65e-14!172;CL:0002031!5.61e-14!124;CL:0002087!3.26e-13!119;CL:0002032!1.44e-12!165;CL:0000837!1.44e-12!165;CL:0000988!9.63e-12!182;CL:0000791!1.18e-10!18;CL:0000789!1.18e-10!18;CL:0002420!1.18e-10!18;CL:0002419!1.18e-10!18;CL:0000790!1.18e-10!18;CL:0000838!4.59e-09!52;CL:0000542!9.38e-09!53;CL:0000051!9.38e-09!53;CL:0000625!2.84e-08!11;CL:0000766!4.17e-08!76 | |ontology_enrichment_celltype=CL:0000738!2.79e-18!140;CL:0000037!4.65e-14!172;CL:0000566!4.65e-14!172;CL:0002031!5.61e-14!124;CL:0002087!3.26e-13!119;CL:0002032!1.44e-12!165;CL:0000837!1.44e-12!165;CL:0000988!9.63e-12!182;CL:0000791!1.18e-10!18;CL:0000789!1.18e-10!18;CL:0002420!1.18e-10!18;CL:0002419!1.18e-10!18;CL:0000790!1.18e-10!18;CL:0000838!4.59e-09!52;CL:0000542!9.38e-09!53;CL:0000051!9.38e-09!53;CL:0000625!2.84e-08!11;CL:0000766!4.17e-08!76 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.23e-10;18!CL:0000789;1.23e-10;18!CL:0002419;1.23e-10;18!CL:0000625;2.78e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.38e-19,136;CL:0002031,8.54e-15,120;CL:0000037,1.07e-14,168;CL:0002087,5.08e-14,115;CL:0002032,3.57e-13,161;CL:0000837,3.57e-13,161;CL:0000988,1.02e-12,177;CL:0000791,1.18e-10,18;CL:0000789,1.18e-10,18;CL:0002420,1.18e-10,18;CL:0002419,1.18e-10,18;CL:0000790,1.18e-10,18;CL:0000838,4.59e-09,52;CL:0000766,7.14e-09,72;CL:0000542,9.38e-09,53;CL:0000051,9.38e-09,53;CL:0000625,2.84e-08,11;CL:0000557,7.70e-07,67 | |||
|ontology_enrichment_development_v019=CL:0000790;1.23e-10;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.90e-21!115;UBERON:0002780!4.68e-11!41;UBERON:0001890!4.68e-11!41;UBERON:0006240!4.68e-11!41;UBERON:0003080!1.86e-10!42;UBERON:0001049!3.53e-10!57;UBERON:0005068!3.53e-10!57;UBERON:0006241!3.53e-10!57;UBERON:0007135!3.53e-10!57;UBERON:0002390!3.35e-09!102;UBERON:0003061!3.35e-09!102;UBERON:0002020!6.41e-09!34;UBERON:0003528!6.41e-09!34;UBERON:0002616!1.21e-08!59;UBERON:0001869!3.01e-08!32;UBERON:0001893!4.97e-08!34;UBERON:0002791!6.25e-08!33;UBERON:0000955!8.22e-08!69;UBERON:0006238!8.22e-08!69;UBERON:0002193!3.58e-07!112;UBERON:0002619!5.08e-07!22;UBERON:0000178!6.59e-07!15;UBERON:0000179!6.59e-07!15;UBERON:0000463!6.59e-07!15;UBERON:0001017!8.24e-07!82 | |ontology_enrichment_uberon=UBERON:0007023!2.90e-21!115;UBERON:0002780!4.68e-11!41;UBERON:0001890!4.68e-11!41;UBERON:0006240!4.68e-11!41;UBERON:0003080!1.86e-10!42;UBERON:0001049!3.53e-10!57;UBERON:0005068!3.53e-10!57;UBERON:0006241!3.53e-10!57;UBERON:0007135!3.53e-10!57;UBERON:0002390!3.35e-09!102;UBERON:0003061!3.35e-09!102;UBERON:0002020!6.41e-09!34;UBERON:0003528!6.41e-09!34;UBERON:0002616!1.21e-08!59;UBERON:0001869!3.01e-08!32;UBERON:0001893!4.97e-08!34;UBERON:0002791!6.25e-08!33;UBERON:0000955!8.22e-08!69;UBERON:0006238!8.22e-08!69;UBERON:0002193!3.58e-07!112;UBERON:0002619!5.08e-07!22;UBERON:0000178!6.59e-07!15;UBERON:0000179!6.59e-07!15;UBERON:0000463!6.59e-07!15;UBERON:0001017!8.24e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.97e-08;41!UBERON:0001890;3.97e-08;41!UBERON:0003528;1.17e-07;34!UBERON:0002020;1.17e-07;34!UBERON:0002791;1.35e-07;32!UBERON:0001869;1.50e-07;32!UBERON:0001893;4.02e-07;34!UBERON:0002619;5.87e-07;22!UBERON:0000178;6.54e-07;15!UBERON:0000179;6.54e-07;15!UBERON:0000463;6.54e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.37e-21,114;UBERON:0002780,4.68e-11,41;UBERON:0001890,4.68e-11,41;UBERON:0003080,4.68e-11,41;UBERON:0006240,4.68e-11,41;UBERON:0001049,1.17e-10,56;UBERON:0005068,1.17e-10,56;UBERON:0006241,1.17e-10,56;UBERON:0007135,1.17e-10,56;UBERON:0000073,5.81e-10,53;UBERON:0002616,5.81e-10,53;UBERON:0002390,7.00e-10,98;UBERON:0003061,7.00e-10,98;UBERON:0003528,6.41e-09,34;UBERON:0002020,6.41e-09,34;UBERON:0002791,2.85e-08,32;UBERON:0001869,3.01e-08,32;UBERON:0000955,3.71e-08,68;UBERON:0006238,3.71e-08,68;UBERON:0001893,4.97e-08,34;UBERON:0002193,1.09e-07,108;UBERON:0001016,2.67e-07,89;UBERON:0001017,4.30e-07,81;UBERON:0002619,5.08e-07,22;UBERON:0000178,6.59e-07,15;UBERON:0000179,6.59e-07,15;UBERON:0000463,6.59e-07,15 | |||
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|short_description=p1@GCC2 | |short_description=p1@GCC2 | ||
}} | }} |
Latest revision as of 06:05, 16 September 2015
Short description: | p1@GCC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GCC2_5end |
Coexpression cluster: | C176_Eosinophils_Neutrophils_Mast_CD14_CD4_Basophils_CD19 |
Association with transcript: | 0bp_to_ENST00000309863, ENST00000409821, ENST00000467566, ENST00000478207_5end |
EntrezGene: | GCC2 |
HGNC: | 23218 |
UniProt: | Q8IWJ2B8ZZA5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.38e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 8.54e-15 | 120 |
hematopoietic stem cell | 1.07e-14 | 168 |
nongranular leukocyte | 5.08e-14 | 115 |
hematopoietic oligopotent progenitor cell | 3.57e-13 | 161 |
hematopoietic multipotent progenitor cell | 3.57e-13 | 161 |
hematopoietic cell | 1.02e-12 | 177 |
mature alpha-beta T cell | 1.18e-10 | 18 |
alpha-beta T cell | 1.18e-10 | 18 |
immature T cell | 1.18e-10 | 18 |
mature T cell | 1.18e-10 | 18 |
immature alpha-beta T cell | 1.18e-10 | 18 |
lymphoid lineage restricted progenitor cell | 4.59e-09 | 52 |
myeloid leukocyte | 7.14e-09 | 72 |
lymphocyte | 9.38e-09 | 53 |
common lymphoid progenitor | 9.38e-09 | 53 |
CD8-positive, alpha-beta T cell | 2.84e-08 | 11 |
granulocyte monocyte progenitor cell | 7.70e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.37e-21 | 114 |
regional part of forebrain | 4.68e-11 | 41 |
forebrain | 4.68e-11 | 41 |
anterior neural tube | 4.68e-11 | 41 |
future forebrain | 4.68e-11 | 41 |
neural tube | 1.17e-10 | 56 |
neural rod | 1.17e-10 | 56 |
future spinal cord | 1.17e-10 | 56 |
neural keel | 1.17e-10 | 56 |
regional part of nervous system | 5.81e-10 | 53 |
regional part of brain | 5.81e-10 | 53 |
hematopoietic system | 7.00e-10 | 98 |
blood island | 7.00e-10 | 98 |
brain grey matter | 6.41e-09 | 34 |
gray matter | 6.41e-09 | 34 |
regional part of telencephalon | 2.85e-08 | 32 |
cerebral hemisphere | 3.01e-08 | 32 |
brain | 3.71e-08 | 68 |
future brain | 3.71e-08 | 68 |
telencephalon | 4.97e-08 | 34 |
hemolymphoid system | 1.09e-07 | 108 |
nervous system | 2.67e-07 | 89 |
central nervous system | 4.30e-07 | 81 |
regional part of cerebral cortex | 5.08e-07 | 22 |
blood | 6.59e-07 | 15 |
haemolymphatic fluid | 6.59e-07 | 15 |
organism substance | 6.59e-07 | 15 |