FFCP PHASE1:Hg19::chr2:109237734..109237743,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt=F8WE10 | |UniProt=F8WE10 | ||
|association_with_transcript=5bp_to_ENST00000422797_5end | |association_with_transcript=5bp_to_ENST00000422797_5end | ||
|cluster_id=chr2:109237734..109237743,+ | |||
|coexpression_cluster_id=C854 | |coexpression_cluster_id=C854 | ||
|description=CAGE_peak_20_at_LIMS1_5end | |description=CAGE_peak_20_at_LIMS1_5end | ||
|id=chr2:109237734..109237743,+ | |id=chr2:109237734..109237743,+ | ||
|ontology_enrichment_celltype=CL:0000542!3.89e-13!53;CL:0000051!3.89e-13!53;CL:0000838!1.84e-12!52;CL:0000791!3.22e-12!18;CL:0000789!3.22e-12!18;CL:0002420!3.22e-12!18;CL:0002419!3.22e-12!18;CL:0000790!3.22e-12!18;CL:0000084!5.54e-12!25;CL:0000827!5.54e-12!25;CL:0000625!4.63e-08!11;CL:0000624!7.05e-07!6 | |ontology_enrichment_celltype=CL:0000542!3.89e-13!53;CL:0000051!3.89e-13!53;CL:0000838!1.84e-12!52;CL:0000791!3.22e-12!18;CL:0000789!3.22e-12!18;CL:0002420!3.22e-12!18;CL:0002419!3.22e-12!18;CL:0000790!3.22e-12!18;CL:0000084!5.54e-12!25;CL:0000827!5.54e-12!25;CL:0000625!4.63e-08!11;CL:0000624!7.05e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;4.73e-12;18!CL:0000789;4.73e-12;18!CL:0002419;4.73e-12;18!CL:0000625;1.52e-10;11!CL:0000084;2.06e-08;25!CL:0000898;2.04e-07;3!CL:0002621;5.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.69e-12,18;CL:0000789,3.69e-12,18;CL:0002420,3.69e-12,18;CL:0002419,3.69e-12,18;CL:0000790,3.69e-12,18;CL:0000625,1.16e-10,11;CL:0000084,1.73e-08,25;CL:0000827,1.73e-08,25;CL:0000898,1.98e-07,3;CL:0002621,7.09e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;4.73e-12;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4468;2.12e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,3.66e-10,2 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.11e-07;15!UBERON:0000179;1.11e-07;15!UBERON:0000463;1.11e-07;15!UBERON:0001949;5.37e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.05e-07,15;UBERON:0000179,1.05e-07,15;UBERON:0000463,1.05e-07,15;UBERON:0001949,7.09e-07,3 | |||
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| ||
|short_description=p20@LIMS1 | |short_description=p20@LIMS1 | ||
}} | }} |
Latest revision as of 06:34, 16 September 2015
Short description: | p20@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_LIMS1_5end |
Coexpression cluster: | C854_argyrophil_CD4_anaplastic_smallcell_nonsmall_seminal_CD8 |
Association with transcript: | 5bp_to_ENST00000422797_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | F8WE10 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.69e-12 | 18 |
alpha-beta T cell | 3.69e-12 | 18 |
immature T cell | 3.69e-12 | 18 |
mature T cell | 3.69e-12 | 18 |
immature alpha-beta T cell | 3.69e-12 | 18 |
CD8-positive, alpha-beta T cell | 1.16e-10 | 11 |
T cell | 1.73e-08 | 25 |
pro-T cell | 1.73e-08 | 25 |
naive T cell | 1.98e-07 | 3 |
gingival epithelial cell | 7.09e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.05e-07 | 15 |
haemolymphatic fluid | 1.05e-07 | 15 |
organism substance | 1.05e-07 | 15 |
gingival epithelium | 7.09e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 3.66e-10 | 2 |