FFCP PHASE1:Hg19::chr4:40631859..40631889,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54502 | |EntrezGene=54502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30358 | |HGNC=30358 | ||
|TSSclassifier=strong | |||
|UniProt=A0AV96,D6R9D6 | |UniProt=A0AV96,D6R9D6 | ||
|association_with_transcript=0bp_to_ENST00000295971,ENST00000319592,ENST00000510871,NM_001098634,uc003gvc.2,uc003gve.2_5end | |association_with_transcript=0bp_to_ENST00000295971,ENST00000319592,ENST00000510871,NM_001098634,uc003gvc.2,uc003gve.2_5end | ||
|cluster_id=chr4:40631859..40631889,- | |||
|coexpression_cluster_id=C4411 | |coexpression_cluster_id=C4411 | ||
|description=CAGE_peak_2_at_RBM47_5end | |description=CAGE_peak_2_at_RBM47_5end | ||
|id=chr4:40631859..40631889,- | |id=chr4:40631859..40631889,- | ||
|ontology_enrichment_celltype=CL:0000766!2.46e-30!76;CL:0000557!1.22e-28!71;CL:0002009!6.60e-28!65;CL:0002194!8.40e-27!63;CL:0000576!8.40e-27!63;CL:0000040!8.40e-27!63;CL:0000559!8.40e-27!63;CL:0000839!1.99e-25!70;CL:0002057!3.10e-23!42;CL:0000860!3.84e-23!45;CL:0000763!2.91e-15!112;CL:0000049!2.91e-15!112;CL:0000738!9.27e-12!140;CL:0002031!9.61e-09!124;CL:0002087!2.44e-08!119;CL:0000223!7.85e-07!59 | |ontology_enrichment_celltype=CL:0000766!2.46e-30!76;CL:0000557!1.22e-28!71;CL:0002009!6.60e-28!65;CL:0002194!8.40e-27!63;CL:0000576!8.40e-27!63;CL:0000040!8.40e-27!63;CL:0000559!8.40e-27!63;CL:0000839!1.99e-25!70;CL:0002057!3.10e-23!42;CL:0000860!3.84e-23!45;CL:0000763!2.91e-15!112;CL:0000049!2.91e-15!112;CL:0000738!9.27e-12!140;CL:0002031!9.61e-09!124;CL:0002087!2.44e-08!119;CL:0000223!7.85e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.01e-21;33!CL:0002057;1.01e-21;33!CL:0000473;2.72e-21;39!CL:0000234;2.72e-21;39!CL:0000576;3.68e-18;48!CL:0000766;2.61e-15;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.40e-34,72;CL:0000557,1.13e-32,67;CL:0002009,3.85e-32,61;CL:0002194,7.10e-31,59;CL:0000576,7.10e-31,59;CL:0000040,7.10e-31,59;CL:0000559,7.10e-31,59;CL:0000473,4.94e-30,48;CL:0000234,4.94e-30,48;CL:0000839,2.03e-29,66;CL:0000860,3.14e-26,42;CL:0002057,3.14e-26,42;CL:0000763,5.06e-20,108;CL:0000049,5.06e-20,108;CL:0000738,8.79e-14,136;CL:0002031,2.88e-10,120;CL:0002087,1.13e-09,115;CL:0000223,1.02e-08,58;CL:0002076,5.61e-08,42;CL:0002032,5.71e-08,161;CL:0000837,5.71e-08,161;CL:0000037,1.07e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;2.77e-19;42 | |||
|ontology_enrichment_disease=DOID:305!1.46e-07!106 | |ontology_enrichment_disease=DOID:305!1.46e-07!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.48e-24!102;UBERON:0003061!8.48e-24!102;UBERON:0002371!3.35e-23!80;UBERON:0001474!4.20e-21!86;UBERON:0002193!3.36e-19!112;UBERON:0000062!1.13e-17!511;UBERON:0002405!4.15e-16!115;UBERON:0004765!1.26e-15!101;UBERON:0001434!1.26e-15!101;UBERON:0000922!1.53e-11!612;UBERON:0000466!2.03e-10!126;UBERON:0000926!2.65e-10!448;UBERON:0004120!2.65e-10!448;UBERON:0006603!2.65e-10!448;UBERON:0000464!3.26e-10!104;UBERON:0002050!3.87e-10!605;UBERON:0005423!3.87e-10!605;UBERON:0000923!5.09e-10!604;UBERON:0005291!5.09e-10!604;UBERON:0006598!5.09e-10!604;UBERON:0002532!5.09e-10!604;UBERON:0000467!1.25e-09!625;UBERON:0000468!1.26e-09!659;UBERON:0000480!2.06e-09!626;UBERON:0004119!3.84e-09!169;UBERON:0000925!3.84e-09!169;UBERON:0006595!3.84e-09!169;UBERON:0001007!2.33e-08!155;UBERON:0001555!2.33e-08!155;UBERON:0007026!2.33e-08!155;UBERON:0004921!3.15e-08!129;UBERON:0004185!3.15e-08!129;UBERON:0000077!1.46e-07!130;UBERON:0001041!1.96e-07!98 | |ontology_enrichment_uberon=UBERON:0002390!8.48e-24!102;UBERON:0003061!8.48e-24!102;UBERON:0002371!3.35e-23!80;UBERON:0001474!4.20e-21!86;UBERON:0002193!3.36e-19!112;UBERON:0000062!1.13e-17!511;UBERON:0002405!4.15e-16!115;UBERON:0004765!1.26e-15!101;UBERON:0001434!1.26e-15!101;UBERON:0000922!1.53e-11!612;UBERON:0000466!2.03e-10!126;UBERON:0000926!2.65e-10!448;UBERON:0004120!2.65e-10!448;UBERON:0006603!2.65e-10!448;UBERON:0000464!3.26e-10!104;UBERON:0002050!3.87e-10!605;UBERON:0005423!3.87e-10!605;UBERON:0000923!5.09e-10!604;UBERON:0005291!5.09e-10!604;UBERON:0006598!5.09e-10!604;UBERON:0002532!5.09e-10!604;UBERON:0000467!1.25e-09!625;UBERON:0000468!1.26e-09!659;UBERON:0000480!2.06e-09!626;UBERON:0004119!3.84e-09!169;UBERON:0000925!3.84e-09!169;UBERON:0006595!3.84e-09!169;UBERON:0001007!2.33e-08!155;UBERON:0001555!2.33e-08!155;UBERON:0007026!2.33e-08!155;UBERON:0004921!3.15e-08!129;UBERON:0004185!3.15e-08!129;UBERON:0000077!1.46e-07!130;UBERON:0001041!1.96e-07!98 | ||
|ontology_enrichment_uberon_v019= | |||
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|phase1_expression=0,0,0.140954404095971,1.0007329835313,0,0,0,0,0,5.89761447603621,10.4670175195864,2.62129646556207,2.37390280405608,0,0,0.672325146451775,0,0.730310090387373,0.975865597581014,1.47745269692145,0.408001382488506,0.313454721478088,0.286235987131057,0.821246550437305,0,7.94699419778693,6.89644951379544,7.32010266217217,4.32700704533794,3.45446458287491,4.79929982279836,15.6301608161418,6.024118375565,5.9160641626686,0,0,0.587200878669695,9.97191735357379,8.82395568868623,9.98250005292918,28.4372652284704,24.9398122834614,36.0605794687861,18.1747798474456,29.4743236077271,24.9861583023451,31.6103490191731,39.0609493620735,48.9336066014264,74.2246372191148,65.8333015779789,91.5186229668825,25.1664346937732,50.3478053195384,46.0450054420762,20.8948996892291,34.9319872074043,33.9332461512078,26.3232147438976,61.2974441715339,37.0815532963444,76.8553529435049,60.6369519169761,86.9498491086696,32.5034347264014,63.5471451654077,54.185535662615,69.5958802761179,70.9216769051474,77.3192287150215,27.848377121135,67.0265297497368,49.6845948282189,5.70389273042243,9.56719349842696,9.43463904787692,4.26848798356681,8.25972910628285,7.39337698806569,4.27519115611873,3.9783335439818,6.02791707423292,0,0.546138611262131,0.889509253863555,0.853460445133014,0,1.14950487990897,0.661044872784862,0.954053754535364,0,0,0.764546456250458,0,2.24203425192614,0.526768169550154,0,0,0.205601498999509,0,0,0,0,2.78526142212934,0,0,0,0.128091319725675,1.04047478047903,0.493313713811028,0,0.869409257205157,0.296573126324121,0.267540828089713,0,3.17266159553185,0,0,0,0,0,0,0.301150238155546,0.255973222308837,0,0.473554504088034,0,0,0,0,2.43806866313962,1.34140171940727,0.12786256184353,0,0,0,0.795285947051099,0,4.63220604103932,3.32594096193846,3.16205228495254,5.37014209540622,7.65020105414339,9.26961106961073,13.6309905334967,15.8458060942333,8.90818335476397,0.238490624305342,1.71598473234038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.58902087180316,23.2668158488995,12.210633459991,0,0,1.32409180813219,0.573673241497627,0,0,0,0.49333509683432,2.17847724779836,1.21239604862719,1.30769522490767,0.454072282934794,0,0,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,1.18800285728205,0.247266929278557,0,0,0,0,0,0.877955241761676,0,2.70428506031874,0.453728732640084,0.717558542755448,0,0.211931901159562,0.300091096084402,0.515262646192195,0,0.37223371266318,0.506328996723799,0.194874010322397,0.504867548488229,0.368199594569197,0.646584227275248,2.84007674013291,0.503760491138201,0,8.11695583285847,9.00062197949754,5.16248271700207,3.29329006549908,3.84336328132307,3.83440011469411,5.07939169575315,6.05570042101508,4.74470566798579,1.56449532329816,0,0,0,0,0.591534000199219,0.674338760312407,0.241011029883482,0.330881918197182,0.871517776369625,1.18635309555548,1.21348177344148,1.37355025587742,0.769494313892781,0,0,2.8810180793198,1.47008711385542,15.2106041786197,4.91413608338813,14.7697476670351,0,2.45976877086227,1.88724591328378,2.63400684980701,2.24803506515239,2.31216636546751,7.77742939331649,0,0,4.3299402607582,0.927443239800615,0.587043471179108,0,0,0,4.74122638775565,6.00940313466411,24.6217006087397,13.806251643215,15.9035343648939,1.87467667973554,4.19955320497149,6.80520466763455,0.0895585227028483,0,0,2.95597942737566,0.176096868026452,10.5737338925794,8.07071739134984,14.8966071443128,0,0.381988425558278,0,0,0,0,0,0.112131084345361,0,0,1.16344544182,0,0,0,0,0,0,0.532844358032199,0.142977993658148,2.17048642156577,0.823240336780769,0,0,1.58390374586686,4.82303003295338,3.48613383440118,7.09808237392605,23.1085183218262,25.1128545716063,27.4084121327941,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0.385029108839245,0.76228387266739,3.90419561572865,0,0.670065061337395,0,21.7212036944683,11.966458368161,30.6667479942666,0,0,0.271265023699736,0.207970861530807,0,0.157702415033935,0.117141414992713,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0.260650843404249,0,0.343143423810856,3.51505644408909,3.45142721309787,2.13455115606889,0.303127571446259,0,0.30239029332968,0,0.306923946576125,0,0.128139149255701,1.02341449813341,0,0,0,0.355123450626254,0.0821271560138091,1.03850885836724,0.116210378459959,1.93375119346596,5.01266175758212,6.72191219232043,0.229628896329213,0,0,3.60959690325929,4.77495090047372,1.56869953835371,10.2297457257282,3.79985864014353,0,0,0,0,1.35473218771926,1.00337954770971,6.88165937221603,11.6350641250021,4.70136984916574,0,0,10.2580050046556,7.54433685109323,4.55529752530024,20.0929972713058,0.183138929636687,0.247528499761764,0,4.55042172225565,0,0,0,0,0.137836572484531,1.28904293841928,1.88521702088497,0.511359764496605,0.0890320356467374,4.29740779938543,1.72971060628596,21.3113229865955,4.8555734810664,0,0,0,0.308033580176089,0,0.869932992075073,0,0.143124886741991,0,0,0.38126038784765,0.255897791311334,0.42793898803392,0,0,0,0.274537029736055,0.117812402345686,0,0,2.10629228119491,1.46290121726877,0.731140468893853,0,0,0.141405431953713,0,0.551365343546124,0.6634389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| ||
|short_description=p2@RBM47 | |short_description=p2@RBM47 | ||
}} | }} |
Latest revision as of 18:51, 17 September 2015
Short description: | p2@RBM47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RBM47_5end |
Coexpression cluster: | C4411_pancreatic_salivary_CD14_parotid_submaxillary_choriocarcinoma_seminal |
Association with transcript: | 0bp_to_ENST00000295971, ENST00000319592, ENST00000510871, NM_001098634, uc003gvc.2, uc003gve.2_5end |
EntrezGene: | RBM47 |
HGNC: | 30358 |
UniProt: | A0AV96D6R9D6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.40e-34 | 72 |
granulocyte monocyte progenitor cell | 1.13e-32 | 67 |
macrophage dendritic cell progenitor | 3.85e-32 | 61 |
monopoietic cell | 7.10e-31 | 59 |
monocyte | 7.10e-31 | 59 |
monoblast | 7.10e-31 | 59 |
promonocyte | 7.10e-31 | 59 |
defensive cell | 4.94e-30 | 48 |
phagocyte | 4.94e-30 | 48 |
myeloid lineage restricted progenitor cell | 2.03e-29 | 66 |
classical monocyte | 3.14e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.14e-26 | 42 |
myeloid cell | 5.06e-20 | 108 |
common myeloid progenitor | 5.06e-20 | 108 |
leukocyte | 8.79e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 2.88e-10 | 120 |
nongranular leukocyte | 1.13e-09 | 115 |
endodermal cell | 1.02e-08 | 58 |
endo-epithelial cell | 5.61e-08 | 42 |
hematopoietic oligopotent progenitor cell | 5.71e-08 | 161 |
hematopoietic multipotent progenitor cell | 5.71e-08 | 161 |
hematopoietic stem cell | 1.07e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.10e-26 | 98 |
blood island | 4.10e-26 | 98 |
bone marrow | 5.92e-25 | 76 |
bone element | 1.33e-22 | 82 |
hemolymphoid system | 3.01e-22 | 108 |
immune system | 4.29e-20 | 93 |
skeletal element | 4.67e-20 | 90 |
skeletal system | 1.22e-15 | 100 |
embryo | 1.09e-09 | 592 |
developing anatomical structure | 9.05e-09 | 581 |
trunk region element | 1.14e-08 | 101 |
endoderm-derived structure | 4.56e-08 | 160 |
endoderm | 4.56e-08 | 160 |
presumptive endoderm | 4.56e-08 | 160 |
digestive system | 9.39e-08 | 145 |
digestive tract | 9.39e-08 | 145 |
primitive gut | 9.39e-08 | 145 |
subdivision of digestive tract | 1.23e-07 | 118 |