FFCP PHASE1:Hg19::chr1:185846482..185846486,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:185846482..185846486,+ | |||
|coexpression_cluster_id=C90 | |coexpression_cluster_id=C90 | ||
|description=CAGE_peak_at_chr1:185846482..185846486,+ | |description=CAGE_peak_at_chr1:185846482..185846486,+ | ||
|id=chr1:185846482..185846486,+ | |id=chr1:185846482..185846486,+ | ||
|ontology_enrichment_celltype=CL:0002620!6.33e-07!23 | |ontology_enrichment_celltype=CL:0002620!6.33e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0002174;8.52e-08;1!CL:0000501;8.52e-08;1!CL:0002570;2.25e-07;8!CL:0000511;2.74e-07;1!CL:0002625;2.74e-07;1!CL:0000222;2.74e-07;1!CL:0002568;2.74e-07;1!CL:0000216;2.74e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002174,8.54e-08,1;CL:0000501,8.54e-08,1;CL:0000511,1.95e-07,1;CL:0002625,1.95e-07,1;CL:0000216,1.95e-07,1;CL:0002570,2.57e-07,8;CL:0002568,3.01e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.17e-07;1!UBERON:0005425;2.74e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;5.10e-16;10!DOID:1909;2.26e-13;2!DOID:3095;3.92e-07;22!DOID:2994;3.92e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,5.28e-16,10;DOID:1909,2.81e-13,2;DOID:3095,3.98e-07,22;DOID:2994,3.98e-07,22 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;4.21e-26;4!UBERON:0000923;4.21e-26;4!UBERON:0010316;4.21e-26;4!UBERON:0005291;4.21e-26;4!UBERON:0002050;6.33e-21;5!UBERON:0005423;6.33e-21;5!UBERON:0002331;5.25e-10;10!UBERON:0002146;1.17e-07;1!UBERON:0005623;1.17e-07;1!UBERON:0007029;2.74e-07;1!UBERON:0001136;2.74e-07;1!UBERON:0000941;2.74e-07;1!UBERON:0001343;2.74e-07;1!UBERON:0001785;2.74e-07;1!UBERON:0002464;2.74e-07;1!UBERON:0004904;2.74e-07;1!UBERON:0001021;2.74e-07;1!UBERON:0004910;2.74e-07;1!UBERON:0004813;2.74e-07;1!UBERON:0000922;5.63e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,7.15e-10,10;UBERON:0000358,7.15e-10,10;UBERON:0000307,7.15e-10,10;UBERON:0000091,7.15e-10,10;UBERON:0000087,7.15e-10,10;UBERON:0007010,7.15e-10,10;UBERON:0007806,7.15e-10,10;UBERON:0008780,7.15e-10,10;UBERON:0005728,7.15e-10,10;UBERON:0002146,1.42e-07,1;UBERON:0005623,1.42e-07,1;UBERON:0001136,1.95e-07,1;UBERON:0001343,1.95e-07,1;UBERON:0004910,1.95e-07,1;UBERON:0005154,1.95e-07,1;UBERON:0005295,1.95e-07,1;UBERON:0004813,1.95e-07,1;UBERON:0005297,1.95e-07,1;UBERON:0005294,1.95e-07,1;UBERON:0010141,1.95e-07,1;UBERON:0005891,1.95e-07,1;UBERON:0007029,2.35e-07,1;UBERON:0000941,2.50e-07,1;UBERON:0001785,2.50e-07,1;UBERON:0002464,2.50e-07,1;UBERON:0004904,2.50e-07,1;UBERON:0001021,2.50e-07,1;UBERON:0003902,2.50e-07,1;UBERON:0005425,2.50e-07,1 | |||
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| ||
|short_description=p@chr1:185846482..185846486,+ | |short_description=p@chr1:185846482..185846486,+ | ||
}} | }} |
Latest revision as of 01:28, 28 July 2015
Short description: | p@chr1:185846482..185846486, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:185846482..185846486, + |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
follicular cell of ovary | 8.54e-08 | 1 |
granulosa cell | 8.54e-08 | 1 |
androgen binding protein secreting cell | 1.95e-07 | 1 |
seminiferous tubule epithelial cell | 1.95e-07 | 1 |
Sertoli cell | 1.95e-07 | 1 |
mesenchymal stem cell of adipose | 2.57e-07 | 8 |
mesenchymal stem cell of Wharton's jelly | 3.01e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 7.15e-10 | 10 |
blastocyst | 7.15e-10 | 10 |
blastula | 7.15e-10 | 10 |
bilaminar disc | 7.15e-10 | 10 |
inner cell mass | 7.15e-10 | 10 |
cleaving embryo | 7.15e-10 | 10 |
connecting stalk | 7.15e-10 | 10 |
inner cell mass derived epiblast | 7.15e-10 | 10 |
extraembryonic mesoderm | 7.15e-10 | 10 |
pulmonary valve | 1.42e-07 | 1 |
semi-lunar valve | 1.42e-07 | 1 |
mesothelium | 1.95e-07 | 1 |
seminiferous tubule of testis | 1.95e-07 | 1 |
epithelium of male gonad | 1.95e-07 | 1 |
epithelial cord | 1.95e-07 | 1 |
sex cord | 1.95e-07 | 1 |
seminiferous tubule epithelium | 1.95e-07 | 1 |
testis sex cord | 1.95e-07 | 1 |
genital ridge | 1.95e-07 | 1 |
primitive sex cord of indifferent gonad | 1.95e-07 | 1 |
coelomic epithelium | 1.95e-07 | 1 |
surface | 2.35e-07 | 1 |
cranial nerve II | 2.50e-07 | 1 |
cranial nerve | 2.50e-07 | 1 |
nerve trunk | 2.50e-07 | 1 |
nerve connecting eye with brain | 2.50e-07 | 1 |
nerve | 2.50e-07 | 1 |
retinal neural layer | 2.50e-07 | 1 |
presumptive neural retina | 2.50e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.28e-16 | 10 |
melanoma | 2.81e-13 | 2 |
germ cell and embryonal cancer | 3.98e-07 | 22 |
germ cell cancer | 3.98e-07 | 22 |