FFCP PHASE1:Hg19::chr13:27745913..27745924,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=219333 | |EntrezGene=219333 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20485 | |HGNC=20485 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=104bp_to_uc001uqy.2_5end | |association_with_transcript=104bp_to_uc001uqy.2_5end | ||
|cluster_id=chr13:27745913..27745924,- | |||
|coexpression_cluster_id=C3023 | |coexpression_cluster_id=C3023 | ||
|description=CAGE_peak_2_at_USP12_5end | |description=CAGE_peak_2_at_USP12_5end | ||
|id=chr13:27745913..27745924,- | |id=chr13:27745913..27745924,- | ||
|ontology_enrichment_celltype=CL:0000860;5.21e-15;33!CL:0002057;5.21e-15;33!CL:0000473;2.31e-13;39!CL:0000234;2.31e-13;39!CL:0000576;3.48e-10;48!CL:0000766;1.40e-09;69 | |ontology_enrichment_celltype=CL:0000839!3.19e-20!70;CL:0000557!4.27e-20!71;CL:0002009!3.84e-19!65;CL:0000766!4.12e-19!76;CL:0002194!5.70e-18!63;CL:0000576!5.70e-18!63;CL:0000040!5.70e-18!63;CL:0000559!5.70e-18!63;CL:0000860!1.37e-17!45;CL:0002057!1.54e-17!42;CL:0000763!4.26e-14!112;CL:0000049!4.26e-14!112;CL:0000738!4.30e-13!140;CL:0002031!4.94e-13!124;CL:0002087!5.90e-11!119;CL:0002032!5.97e-10!165;CL:0000837!5.97e-10!165;CL:0000037!2.09e-09!172;CL:0000566!2.09e-09!172;CL:0000988!1.77e-08!182 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;5.21e-15;33!CL:0002057;5.21e-15;33!CL:0000473;2.31e-13;39!CL:0000234;2.31e-13;39!CL:0000576;3.48e-10;48!CL:0000766;1.40e-09;69 | ||
|ontology_enrichment_celltype_v019_2=CL:0000839,4.28e-21,66;CL:0000557,5.97e-21,67;CL:0002009,5.88e-20,61;CL:0000766,6.83e-20,72;CL:0000473,4.94e-19,48;CL:0000234,4.94e-19,48;CL:0002194,1.07e-18,59;CL:0000576,1.07e-18,59;CL:0000040,1.07e-18,59;CL:0000559,1.07e-18,59;CL:0000860,2.38e-18,42;CL:0002057,2.38e-18,42;CL:0000763,7.80e-15,108;CL:0000049,7.80e-15,108;CL:0000738,2.65e-13,136;CL:0002031,7.99e-13,120;CL:0002087,1.15e-10,115;CL:0002032,5.58e-10,161;CL:0000837,5.58e-10,161;CL:0000037,1.05e-09,168;CL:0000988,4.37e-09,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.24e-13;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000178;3.88e-10;15!UBERON:0000179;3.88e-10;15!UBERON:0000463;3.88e-10;15 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.49e-22!102;UBERON:0003061!5.49e-22!102;UBERON:0002193!3.38e-20!112;UBERON:0002371!1.09e-16!80;UBERON:0001474!3.37e-16!86;UBERON:0003081!1.66e-15!216;UBERON:0004765!1.35e-13!101;UBERON:0001434!1.35e-13!101;UBERON:0000926!6.60e-13!448;UBERON:0004120!6.60e-13!448;UBERON:0006603!6.60e-13!448;UBERON:0002405!3.09e-12!115;UBERON:0000178!1.47e-09!15;UBERON:0000179!1.47e-09!15;UBERON:0000463!1.47e-09!15;UBERON:0002204!3.26e-09!167;UBERON:0000467!4.82e-08!625;UBERON:0000480!6.00e-08!626;UBERON:0000479!6.12e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.88e-10;15!UBERON:0000179;3.88e-10;15!UBERON:0000463;3.88e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.48e-23,98;UBERON:0003061,6.48e-23,98;UBERON:0002193,5.04e-21,108;UBERON:0003081,1.93e-19,203;UBERON:0002371,2.10e-17,76;UBERON:0001474,1.03e-16,82;UBERON:0004765,4.42e-14,90;UBERON:0002405,7.51e-14,93;UBERON:0001434,4.53e-12,100;UBERON:0000926,5.76e-12,315;UBERON:0004120,5.76e-12,315;UBERON:0006603,5.76e-12,315;UBERON:0000178,4.23e-10,15;UBERON:0000179,4.23e-10,15;UBERON:0000463,4.23e-10,15;UBERON:0002204,8.72e-08,167 | |||
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| ||
|short_description=p2@USP12 | |short_description=p2@USP12 | ||
}} | }} |
Latest revision as of 22:43, 16 September 2015
Short description: | p2@USP12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_USP12_5end |
Coexpression cluster: | C3023_Whole_CD14_Reticulocytes_Neutrophils_blood_Eosinophils_immature |
Association with transcript: | 104bp_to_uc001uqy.2_5end |
EntrezGene: | USP12 |
HGNC: | 20485 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 4.28e-21 | 66 |
granulocyte monocyte progenitor cell | 5.97e-21 | 67 |
macrophage dendritic cell progenitor | 5.88e-20 | 61 |
myeloid leukocyte | 6.83e-20 | 72 |
defensive cell | 4.94e-19 | 48 |
phagocyte | 4.94e-19 | 48 |
monopoietic cell | 1.07e-18 | 59 |
monocyte | 1.07e-18 | 59 |
monoblast | 1.07e-18 | 59 |
promonocyte | 1.07e-18 | 59 |
classical monocyte | 2.38e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.38e-18 | 42 |
myeloid cell | 7.80e-15 | 108 |
common myeloid progenitor | 7.80e-15 | 108 |
leukocyte | 2.65e-13 | 136 |
hematopoietic lineage restricted progenitor cell | 7.99e-13 | 120 |
nongranular leukocyte | 1.15e-10 | 115 |
hematopoietic oligopotent progenitor cell | 5.58e-10 | 161 |
hematopoietic multipotent progenitor cell | 5.58e-10 | 161 |
hematopoietic stem cell | 1.05e-09 | 168 |
hematopoietic cell | 4.37e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.48e-23 | 98 |
blood island | 6.48e-23 | 98 |
hemolymphoid system | 5.04e-21 | 108 |
lateral plate mesoderm | 1.93e-19 | 203 |
bone marrow | 2.10e-17 | 76 |
bone element | 1.03e-16 | 82 |
skeletal element | 4.42e-14 | 90 |
immune system | 7.51e-14 | 93 |
skeletal system | 4.53e-12 | 100 |
mesoderm | 5.76e-12 | 315 |
mesoderm-derived structure | 5.76e-12 | 315 |
presumptive mesoderm | 5.76e-12 | 315 |
blood | 4.23e-10 | 15 |
haemolymphatic fluid | 4.23e-10 | 15 |
organism substance | 4.23e-10 | 15 |
musculoskeletal system | 8.72e-08 | 167 |