FFCP PHASE1:Hg19::chr14:22355984..22355994,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12106 | |HGNC=12106 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-42bp_to_ENST00000390437,uc010aiv.1_5end | |association_with_transcript=-42bp_to_ENST00000390437,uc010aiv.1_5end | ||
|cluster_id=chr14:22355984..22355994,+ | |||
|coexpression_cluster_id=C205 | |coexpression_cluster_id=C205 | ||
|description=CAGE_peak_2_at_TRAV12-2_5end | |description=CAGE_peak_2_at_TRAV12-2_5end | ||
|id=chr14:22355984..22355994,+ | |id=chr14:22355984..22355994,+ | ||
|ontology_enrichment_celltype=CL:0000791;2.50e-44;18!CL:0000789;2.50e-44;18!CL:0002419;2.50e-44;18!CL:0000084;1.18e-41;25!CL:0000625;2.00e-37;11!CL:0000815;7.07e-34;2!CL:0000792;7.07e-34;2!CL:0002677;7.07e-34;2!CL:0000898;5.74e-23;3!CL:0000542;1.90e-12;53!CL:0000624;5.37e-12;6 | |ontology_enrichment_celltype=CL:0000625!4.28e-46!11;CL:0000791!1.21e-44!18;CL:0000789!1.21e-44!18;CL:0002420!1.21e-44!18;CL:0002419!1.21e-44!18;CL:0000790!1.21e-44!18;CL:0000084!3.45e-36!25;CL:0000827!3.45e-36!25;CL:0000838!4.45e-20!52;CL:0000542!1.27e-19!53;CL:0000051!1.27e-19!53;CL:0000898!6.90e-14!3;CL:0000815!3.74e-10!2;CL:0000792!3.74e-10!2;CL:0002677!3.74e-10!2;CL:0002087!1.65e-09!119;CL:0000738!2.22e-08!140;CL:0000624!3.77e-07!6;CL:0002031!5.28e-07!124 | ||
| | |ontology_enrichment_celltype_v019=CL:0000791;2.50e-44;18!CL:0000789;2.50e-44;18!CL:0002419;2.50e-44;18!CL:0000084;1.18e-41;25!CL:0000625;2.00e-37;11!CL:0000815;7.07e-34;2!CL:0000792;7.07e-34;2!CL:0002677;7.07e-34;2!CL:0000898;5.74e-23;3!CL:0000542;1.90e-12;53!CL:0000624;5.37e-12;6 | ||
|ontology_enrichment_disease=DOID:0060060;2.66e-18;1!DOID:0060061;2.66e-18;1!DOID:8691;2.66e-18;1 | |ontology_enrichment_celltype_v019_2=CL:0000791,1.31e-44,18;CL:0000789,1.31e-44,18;CL:0002420,1.31e-44,18;CL:0002419,1.31e-44,18;CL:0000790,1.31e-44,18;CL:0000084,6.95e-42,25;CL:0000827,6.95e-42,25;CL:0000625,8.72e-38,11;CL:0000815,8.39e-34,2;CL:0000792,8.39e-34,2;CL:0002677,8.39e-34,2;CL:0000898,6.44e-23,3;CL:0000838,6.21e-20,52;CL:0000542,1.51e-19,53;CL:0000051,1.51e-19,53;CL:0000624,5.68e-12,6;CL:0002087,1.27e-08,115;CL:0002031,3.06e-08,120;CL:0000738,3.36e-07,136 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019=CL:0000790;2.50e-44;18!CL:0000051;1.90e-12;53 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;2.66e-18;1!DOID:0060061;2.66e-18;1!DOID:8691;2.66e-18;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,2.66e-18,1;DOID:0060061,2.66e-18,1;DOID:8691,2.66e-18,1 | |||
|ontology_enrichment_uberon=UBERON:0002370!6.52e-10!4;UBERON:0005058!6.52e-10!4;UBERON:0009113!6.52e-10!4;UBERON:0003295!6.52e-10!4;UBERON:0005562!6.52e-10!4;UBERON:0004177!1.45e-09!7;UBERON:0003351!9.51e-07!6;UBERON:0001042!9.64e-07!10;UBERON:0009145!9.64e-07!10 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p2@TRAV12-2 | |short_description=p2@TRAV12-2 | ||
}} | }} |
Latest revision as of 03:59, 19 September 2015
Short description: | p2@TRAV12-2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TRAV12-2_5end |
Coexpression cluster: | C205_mycosis_cord_hairy_xeroderma_CD4_B_b |
Association with transcript: | -42bp_to_ENST00000390437, uc010aiv.1_5end |
EntrezGene: | NA |
HGNC: | 12106 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.31e-44 | 18 |
alpha-beta T cell | 1.31e-44 | 18 |
immature T cell | 1.31e-44 | 18 |
mature T cell | 1.31e-44 | 18 |
immature alpha-beta T cell | 1.31e-44 | 18 |
T cell | 6.95e-42 | 25 |
pro-T cell | 6.95e-42 | 25 |
CD8-positive, alpha-beta T cell | 8.72e-38 | 11 |
regulatory T cell | 8.39e-34 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.39e-34 | 2 |
naive regulatory T cell | 8.39e-34 | 2 |
naive T cell | 6.44e-23 | 3 |
lymphoid lineage restricted progenitor cell | 6.21e-20 | 52 |
lymphocyte | 1.51e-19 | 53 |
common lymphoid progenitor | 1.51e-19 | 53 |
CD4-positive, alpha-beta T cell | 5.68e-12 | 6 |
nongranular leukocyte | 1.27e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 3.06e-08 | 120 |
leukocyte | 3.36e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 2.66e-18 | 1 |
cutaneous T cell lymphoma | 2.66e-18 | 1 |
mycosis fungoides | 2.66e-18 | 1 |