FFCP PHASE1:Hg19::chr17:7297252..7297297,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57048 | |EntrezGene=57048 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16495 | |HGNC=16495 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-94bp_to_AB464020,DQ893413,DQ896733_5end | |association_with_transcript=-94bp_to_AB464020,DQ893413,DQ896733_5end | ||
|cluster_id=chr17:7297252..7297297,- | |||
|description=CAGE_peak_4_at_PLSCR3_5end | |description=CAGE_peak_4_at_PLSCR3_5end | ||
|id=chr17:7297252..7297297,- | |id=chr17:7297252..7297297,- | ||
|ontology_enrichment_celltype=CL:0000791;2.82e-10;18!CL:0000789;2.82e-10;18!CL:0002419;2.82e-10;18!CL:0000084;1.03e-08;25!CL:0000359;1.51e-08;32!CL:0000192;3.29e-07;43!CL:0002368;3.33e-07;13!CL:0000625;9.57e-07;11 | |ontology_enrichment_celltype=CL:0000003!1.16e-22!722;CL:0002371!2.78e-17!591;CL:0000144!7.84e-16!625;CL:0000548!1.77e-14!679;CL:0000004!1.77e-14!679;CL:0000255!1.77e-14!679;CL:0000012!3.21e-14!682;CL:0000220!5.91e-10!246;CL:0002321!1.01e-09!248;CL:0000055!1.12e-09!180;CL:0000791!1.49e-09!18;CL:0000789!1.49e-09!18;CL:0002420!1.49e-09!18;CL:0002419!1.49e-09!18;CL:0000790!1.49e-09!18;CL:0000222!2.13e-09!119;CL:0000183!9.82e-09!59;CL:0000084!1.03e-08!25;CL:0000827!1.03e-08!25;CL:0000192!1.04e-08!42;CL:0000514!1.04e-08!42;CL:0000680!1.78e-08!57;CL:0000056!1.78e-08!57;CL:0000355!1.78e-08!57;CL:0000359!2.00e-08!32;CL:0000187!2.82e-08!54;CL:0000057!4.13e-08!75;CL:0000542!2.79e-07!53;CL:0000051!2.79e-07!53;CL:0000838!3.01e-07!52;CL:0000076!3.63e-07!62 | ||
| | |ontology_enrichment_celltype_v019=CL:0000791;2.82e-10;18!CL:0000789;2.82e-10;18!CL:0002419;2.82e-10;18!CL:0000084;1.03e-08;25!CL:0000359;1.51e-08;32!CL:0000192;3.29e-07;43!CL:0002368;3.33e-07;13!CL:0000625;9.57e-07;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.91e-10,18;CL:0000789,2.91e-10,18;CL:0002420,2.91e-10,18;CL:0002419,2.91e-10,18;CL:0000790,2.91e-10,18;CL:0000192,2.17e-09,43;CL:0000514,2.17e-09,43;CL:0000680,4.54e-09,58;CL:0000056,4.54e-09,58;CL:0000355,4.54e-09,58;CL:0000057,4.68e-09,76;CL:0000359,4.90e-09,32;CL:0000187,7.53e-09,55;CL:0002321,1.02e-08,250;CL:0000084,1.17e-08,25;CL:0000827,1.17e-08,25;CL:0000222,2.38e-08,121;CL:0000542,3.24e-07,53;CL:0000051,3.24e-07,53;CL:0000838,3.54e-07,52;CL:0002368,3.77e-07,13;CL:0000625,9.55e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;2.82e-10;18!CL:0000514;3.29e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0001637;8.59e-08;42!UBERON:0003509;8.59e-08;42!UBERON:0004572;8.59e-08;42!UBERON:0004573;4.22e-07;33!UBERON:0004571;4.22e-07;33 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!1.07e-11!110;UBERON:0001009!5.65e-11!113;UBERON:0000486!2.28e-10!82;UBERON:0001637!3.39e-10!42;UBERON:0003509!3.39e-10!42;UBERON:0004572!3.39e-10!42;UBERON:0004872!3.92e-10!84;UBERON:0001981!6.95e-09!60;UBERON:0007500!6.95e-09!60;UBERON:0004537!6.95e-09!60;UBERON:0006965!6.95e-09!60;UBERON:0000055!1.75e-08!69;UBERON:0002049!4.61e-08!79;UBERON:0007798!4.61e-08!79;UBERON:0000914!5.60e-08!83;UBERON:0002329!5.60e-08!83;UBERON:0003077!5.60e-08!83;UBERON:0003059!5.60e-08!83;UBERON:0007282!5.60e-08!83;UBERON:0009618!5.60e-08!83;UBERON:0007285!5.60e-08!83;UBERON:0004573!1.37e-07!33;UBERON:0004571!1.37e-07!33;UBERON:0004290!2.08e-07!70;UBERON:0001134!8.02e-07!61;UBERON:0002036!8.02e-07!61;UBERON:0003082!8.02e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;8.59e-08;42!UBERON:0003509;8.59e-08;42!UBERON:0004572;8.59e-08;42!UBERON:0004573;4.22e-07;33!UBERON:0004571;4.22e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,4.60e-11,109;UBERON:0000486,6.52e-11,83;UBERON:0001637,1.20e-10,42;UBERON:0003509,1.20e-10,42;UBERON:0004572,1.20e-10,42;UBERON:0001009,2.33e-10,112;UBERON:0004872,9.56e-10,83;UBERON:0007503,4.16e-09,78;UBERON:0007500,2.59e-08,59;UBERON:0001981,2.59e-08,59;UBERON:0004537,2.59e-08,59;UBERON:0006965,2.59e-08,59;UBERON:0002329,5.15e-08,71;UBERON:0003059,5.15e-08,71;UBERON:0007282,5.15e-08,71;UBERON:0004290,5.15e-08,71;UBERON:0009618,5.15e-08,71;UBERON:0004573,7.86e-08,33;UBERON:0004571,7.86e-08,33;UBERON:0007524,8.97e-08,73;UBERON:0003077,1.20e-07,72;UBERON:0007285,1.20e-07,72;UBERON:0001134,2.24e-07,62;UBERON:0002036,2.24e-07,62;UBERON:0003082,2.24e-07,62;UBERON:0000055,2.60e-07,68;UBERON:0002049,6.67e-07,78;UBERON:0007798,6.67e-07,78 | |||
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| ||
|short_description=p4@PLSCR3 | |short_description=p4@PLSCR3 | ||
}} | }} |
Latest revision as of 09:31, 17 September 2015
Short description: | p4@PLSCR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PLSCR3_5end |
Coexpression cluster: | NA |
Association with transcript: | -94bp_to_AB464020, DQ893413, DQ896733_5end |
EntrezGene: | PLSCR3 |
HGNC: | 16495 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.91e-10 | 18 |
alpha-beta T cell | 2.91e-10 | 18 |
immature T cell | 2.91e-10 | 18 |
mature T cell | 2.91e-10 | 18 |
immature alpha-beta T cell | 2.91e-10 | 18 |
smooth muscle cell | 2.17e-09 | 43 |
smooth muscle myoblast | 2.17e-09 | 43 |
muscle precursor cell | 4.54e-09 | 58 |
myoblast | 4.54e-09 | 58 |
multi-potent skeletal muscle stem cell | 4.54e-09 | 58 |
fibroblast | 4.68e-09 | 76 |
vascular associated smooth muscle cell | 4.90e-09 | 32 |
muscle cell | 7.53e-09 | 55 |
embryonic cell | 1.02e-08 | 250 |
T cell | 1.17e-08 | 25 |
pro-T cell | 1.17e-08 | 25 |
mesodermal cell | 2.38e-08 | 121 |
lymphocyte | 3.24e-07 | 53 |
common lymphoid progenitor | 3.24e-07 | 53 |
lymphoid lineage restricted progenitor cell | 3.54e-07 | 52 |
respiratory epithelial cell | 3.77e-07 | 13 |
CD8-positive, alpha-beta T cell | 9.55e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 4.60e-11 | 109 |
multilaminar epithelium | 6.52e-11 | 83 |
artery | 1.20e-10 | 42 |
arterial blood vessel | 1.20e-10 | 42 |
arterial system | 1.20e-10 | 42 |
circulatory system | 2.33e-10 | 112 |
splanchnic layer of lateral plate mesoderm | 9.56e-10 | 83 |
epithelial vesicle | 4.16e-09 | 78 |
epithelial tube open at both ends | 2.59e-08 | 59 |
blood vessel | 2.59e-08 | 59 |
blood vasculature | 2.59e-08 | 59 |
vascular cord | 2.59e-08 | 59 |
somite | 5.15e-08 | 71 |
presomitic mesoderm | 5.15e-08 | 71 |
presumptive segmental plate | 5.15e-08 | 71 |
dermomyotome | 5.15e-08 | 71 |
trunk paraxial mesoderm | 5.15e-08 | 71 |
systemic artery | 7.86e-08 | 33 |
systemic arterial system | 7.86e-08 | 33 |
dense mesenchyme tissue | 8.97e-08 | 73 |
paraxial mesoderm | 1.20e-07 | 72 |
presumptive paraxial mesoderm | 1.20e-07 | 72 |
skeletal muscle tissue | 2.24e-07 | 62 |
striated muscle tissue | 2.24e-07 | 62 |
myotome | 2.24e-07 | 62 |
vessel | 2.60e-07 | 68 |
vasculature | 6.67e-07 | 78 |
vascular system | 6.67e-07 | 78 |