FFCP PHASE1:Hg19::chr1:155881071..155881087,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:155881071..155881087,-
|short_description=p3@RIT1
|description=CAGE_peak_3_at_RIT1_5end
|association_with_transcript=47bp_to_ENST00000461050_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6016 | |EntrezGene=6016 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10023 | |HGNC=10023 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=47bp_to_ENST00000461050_5end | |||
|cluster_id=chr1:155881071..155881087,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_3_at_RIT1_5end | |||
|id=chr1:155881071..155881087,- | |||
|ontology_enrichment_celltype=CL:0000766!7.04e-34!76;CL:0000839!3.60e-28!70;CL:0000557!4.63e-28!71;CL:0002009!2.40e-27!65;CL:0002194!1.17e-26!63;CL:0000576!1.17e-26!63;CL:0000040!1.17e-26!63;CL:0000559!1.17e-26!63;CL:0002057!1.49e-25!42;CL:0000860!2.86e-23!45;CL:0000763!9.43e-20!112;CL:0000049!9.43e-20!112;CL:0000738!1.24e-14!140;CL:0000012!3.60e-11!682;CL:0000548!4.61e-11!679;CL:0000004!4.61e-11!679;CL:0000255!4.61e-11!679;CL:0000063!1.31e-09!578;CL:0000144!1.81e-09!625;CL:0002031!2.05e-09!124;CL:0000003!3.11e-09!722;CL:0002087!1.30e-08!119;CL:0002371!1.76e-08!591;CL:0000037!2.55e-08!172;CL:0000566!2.55e-08!172;CL:0000988!1.12e-07!182;CL:0002032!1.29e-07!165;CL:0000837!1.29e-07!165;CL:0000048!1.29e-07!430;CL:0000723!5.27e-07!436;CL:0000094!7.60e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.00e-36;33!CL:0002057;3.00e-36;33!CL:0000473;1.36e-35;39!CL:0000234;1.36e-35;39!CL:0000576;1.74e-27;48!CL:0000766;1.31e-24;69!CL:0000094;3.00e-11;8!CL:0000763;1.65e-10;100!CL:0000081;1.88e-09;11!CL:0000738;1.15e-08;136!CL:0000235;9.08e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.97e-60,72;CL:0000839,1.41e-49,66;CL:0000473,3.16e-49,48;CL:0000234,3.16e-49,48;CL:0000557,4.57e-49,67;CL:0002194,4.61e-48,59;CL:0000576,4.61e-48,59;CL:0000040,4.61e-48,59;CL:0000559,4.61e-48,59;CL:0002009,5.70e-48,61;CL:0000860,1.00e-42,42;CL:0002057,1.00e-42,42;CL:0000763,6.30e-39,108;CL:0000049,6.30e-39,108;CL:0000738,2.74e-31,136;CL:0000037,3.42e-21,168;CL:0002031,1.03e-20,120;CL:0002087,5.14e-20,115;CL:0000988,1.02e-19,177;CL:0002032,1.16e-19,161;CL:0000837,1.16e-19,161;CL:0000134,7.59e-14,354;CL:0002320,5.77e-13,361;CL:0000048,1.76e-12,427;CL:0000219,4.54e-12,386;CL:0000723,7.90e-12,433;CL:0000034,1.77e-11,441;CL:0000094,3.19e-11,8;CL:0000081,2.09e-09,11;CL:0000235,9.53e-08,6 | |||
|ontology_enrichment_development_v019=CL:0002057;1.50e-30;42!CL:0000049;2.85e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.75e-26!80;UBERON:0002390!1.02e-25!102;UBERON:0003061!1.02e-25!102;UBERON:0002193!1.57e-25!112;UBERON:0001474!8.32e-24!86;UBERON:0004765!5.04e-23!101;UBERON:0001434!5.04e-23!101;UBERON:0002204!3.00e-18!167;UBERON:0003081!5.21e-18!216;UBERON:0002405!1.22e-16!115;UBERON:0000926!1.83e-09!448;UBERON:0004120!1.83e-09!448;UBERON:0006603!1.83e-09!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.54e-44,76;UBERON:0002390,7.65e-41,98;UBERON:0003061,7.65e-41,98;UBERON:0002193,4.79e-39,108;UBERON:0001474,6.32e-39,82;UBERON:0002405,4.32e-36,93;UBERON:0004765,6.22e-35,90;UBERON:0003081,1.09e-31,203;UBERON:0001434,2.91e-29,100;UBERON:0002204,1.77e-16,167;UBERON:0000926,3.02e-16,315;UBERON:0004120,3.02e-16,315;UBERON:0006603,3.02e-16,315;UBERON:0002384,9.21e-13,371 | |||
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|phase1_expression=0.363356758541113,0,0.845726424575827,1.0007329835313,0,0.872338524100369,0,0,0.261185628199839,0.491467873003018,0,0,0,0.618831764800233,0.331397375727916,0.672325146451775,0.602694528023977,0,0.487932798790507,0.123121058076788,0,0,1.14494394852423,0.136874425072884,0.251085279189606,0.229240217243854,0.328402357799783,0.314843125254717,12.9810211360138,7.67658796194425,8.51488678238418,0.919421224478927,0,0.369754010166788,0,0,0.293600439334847,6.09394949385065,8.02177789880567,4.77423915574874,5.15005590751826,6.15397965436061,6.69696475848885,19.9195587128004,26.8291920019055,14.0698755488933,27.8914844286822,33.7157668177897,39.9521218454684,35.6738566479467,30.2269633704339,29.087314276296,26.200671735983,24.5284179761854,35.2108865145289,34.4483481362967,37.115236407867,42.6974620445661,24.4867113896722,32.7347607617615,19.8194508997703,36.6134943207255,31.3157942465962,32.3930810404848,23.2167390902867,34.0431134814684,27.4041789558053,34.4210671401738,25.0311800841697,36.9221035998698,22.3997815974346,29.0939332430176,26.2663781575934,1.47878700418359,1.27562579979026,1.46761051855863,1.90958672949042,2.70318407114711,4.018139667427,0.570025487482497,1.19350006319454,0.91332076882317,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,2.24203425192614,0.263384084775077,0.393419540227666,0.786021525498329,0.205601498999509,0,0,0,0,0,0.294605907474837,0,0,0.25618263945135,0,0,0,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0.451725357233318,0.127986611154418,0,0,0,0.604820229674197,0.534880391567015,0.289648807765598,0,0.670700859703636,1.02290049474824,1.80719576192283,0,0.579386075843295,0,0,0.0945348171640679,0.886917589850256,0,0.458426764241994,0.364295288292542,0,5.8418530857843,3.65672448328461,3.72282289452822,0.715471872916026,1.14398982156026,0.371457501329565,1.19257444420023,0,0.694281003215189,3.39184765154406,1.67799774483962,1.6507082516404,0.626984899610432,2.58416759169329,2.49036383880697,2.34304428935269,2.01414658554573,2.28081631715554,0,1.10298924103761,0,1.51809538082936,0.44905874525234,0.675668882899933,1.53316637465883,0.949265659568129,1.28241220751285,104.10652977449,77.5560528296651,0,1.49091585508596,1.51956613997496,1.98613771219828,0,0,0,1.06748995729705,1.2333377420858,0,1.0776853765575,0.326923806226917,0.302714855289863,0,0,0,0,0.298897361103602,0,0.161872944368132,0,0,0.122834317311768,0.206651562351531,1.18800285728205,1.7308685049499,0,0,0,0.125118519871964,0.554128230968366,0.877955241761676,0.612975591598039,0.45071417671979,0.453728732640084,1.4351170855109,0.427114777637135,0.635795703478686,0.900273288253207,0,0.772921620136887,0.37223371266318,0.337552664482532,0.584622030967192,1.26216887122057,0.184099797284599,0.161646056818812,1.77504796258307,1.81353776809752,0.508681776931463,0.966304265816484,0.545492241181669,1.14721838155602,0.121973706129595,0,0.232387885739037,0.310983165046111,0,0,0,0.643240938192885,0,0,0,0.828147600278907,0.842923450390509,0.241011029883482,0.220587945464788,0,0,0.674156540800822,0.196221465125346,0.769494313892781,0,1.40241773803446,0,0,0,0,0,0,0.245976877086227,0.171567810298526,0.98775256867763,0,0.100528972411631,0.0925884451585296,0.325808305310325,0,1.44331342025273,0.231860809950154,1.05667824812239,0.866198686566443,0,0.570762456703795,0,0,4.67812311566055,5.14809383306323,4.60756603095058,0.93733833986777,1.84780341018745,0.708875486211932,0.53735113621709,0.581267877027924,0,14.2872338989824,3.52193736052904,1.24396869324463,1.00883967391873,0.6312121671319,0.888970520090367,0.763976851116555,2.34434894420094,0,0.102827492703324,0.600686115687835,0.857479297891735,0.112131084345361,0,0.22001485746285,1.29271715757778,0,0,1.06375246633948,1.04007436911366,0.257207374262142,0,0,1.42977993658148,1.08524321078289,0,0,1.06617584622764,0,0.904318131178758,1.74306691720059,0.99972991182057,4.86495122564762,4.52031382288914,10.5416969741516,3.11512312139057,0,0,0.579125226670317,0.61642896765115,0.179060963239896,0.112085143993527,1.77327684181734,1.07813787429759,0.513372145118994,1.01637849688985,0,0.773288812777695,0.167516265334349,0,45.6894284607781,50.8574480646842,52.2163546929405,0,0.500170521059677,0.542530047399471,0.207970861530807,1.07057393278297,0.315404830067869,0.468565659970853,0.300946099727719,2.27407504055985,0,0,0.368738337083406,0.521301686808497,0,0.686286847621712,2.68798433959754,7.54999702865159,3.30855429190677,0,3.32870879020994,0,0.744323423456331,0.61384789315225,0.561320188866147,0.896974044789907,0.511707249066704,0.482561763430822,2.96836132889982,0.154209693802656,0.532685175939381,0.821271560138091,1.03850885836724,0.697262270759755,0.120859449591622,2.00506470303285,0.184161977871793,1.83703117063371,1.0925470080403,1.57349297951309,0,1.07821471946181,0,0,0.316654886678627,0,0.680374821106063,0.215915916102139,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0.219259876645935,1.0457418040996,0.256450125116389,0.328014645699706,0.650756789328606,0.309123034943167,0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| ||
|short_description=p3@RIT1 | |||
}} | }} |
Latest revision as of 13:35, 17 September 2015
Short description: | p3@RIT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RIT1_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 47bp_to_ENST00000461050_5end |
EntrezGene: | RIT1 |
HGNC: | 10023 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.97e-60 | 72 |
myeloid lineage restricted progenitor cell | 1.41e-49 | 66 |
defensive cell | 3.16e-49 | 48 |
phagocyte | 3.16e-49 | 48 |
granulocyte monocyte progenitor cell | 4.57e-49 | 67 |
monopoietic cell | 4.61e-48 | 59 |
monocyte | 4.61e-48 | 59 |
monoblast | 4.61e-48 | 59 |
promonocyte | 4.61e-48 | 59 |
macrophage dendritic cell progenitor | 5.70e-48 | 61 |
classical monocyte | 1.00e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.00e-42 | 42 |
myeloid cell | 6.30e-39 | 108 |
common myeloid progenitor | 6.30e-39 | 108 |
leukocyte | 2.74e-31 | 136 |
hematopoietic stem cell | 3.42e-21 | 168 |
hematopoietic lineage restricted progenitor cell | 1.03e-20 | 120 |
nongranular leukocyte | 5.14e-20 | 115 |
hematopoietic cell | 1.02e-19 | 177 |
hematopoietic oligopotent progenitor cell | 1.16e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.16e-19 | 161 |
mesenchymal cell | 7.59e-14 | 354 |
connective tissue cell | 5.77e-13 | 361 |
multi fate stem cell | 1.76e-12 | 427 |
motile cell | 4.54e-12 | 386 |
somatic stem cell | 7.90e-12 | 433 |
stem cell | 1.77e-11 | 441 |
granulocyte | 3.19e-11 | 8 |
blood cell | 2.09e-09 | 11 |
macrophage | 9.53e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.54e-44 | 76 |
hematopoietic system | 7.65e-41 | 98 |
blood island | 7.65e-41 | 98 |
hemolymphoid system | 4.79e-39 | 108 |
bone element | 6.32e-39 | 82 |
immune system | 4.32e-36 | 93 |
skeletal element | 6.22e-35 | 90 |
lateral plate mesoderm | 1.09e-31 | 203 |
skeletal system | 2.91e-29 | 100 |
musculoskeletal system | 1.77e-16 | 167 |
mesoderm | 3.02e-16 | 315 |
mesoderm-derived structure | 3.02e-16 | 315 |
presumptive mesoderm | 3.02e-16 | 315 |
connective tissue | 9.21e-13 | 371 |