FFCP PHASE1:Hg19::chr6:160406578..160406590,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:160406578..160406590,+ | |||
|coexpression_cluster_id=C314 | |coexpression_cluster_id=C314 | ||
|description=CAGE_peak_at_chr6:160406578..160406590,+ | |description=CAGE_peak_at_chr6:160406578..160406590,+ | ||
|id=chr6:160406578..160406590,+ | |id=chr6:160406578..160406590,+ | ||
|ontology_enrichment_celltype=CL:0000840;1.57e-68;5!CL:0000990;8.22e-46;8!CL:0000235;9.31e-45;6!CL:0000451;1.54e-37;10!CL:0001014;5.07e-34;2!CL:0001016;5.07e-34;2!CL:0000473;5.99e-16;39!CL:0000234;5.99e-16;39!CL:0000453;2.95e-14;5!CL:0000738;3.09e-07;136 | |ontology_enrichment_celltype=CL:0002009!3.40e-45!65;CL:0000557!6.83e-41!71;CL:0002194!1.88e-39!63;CL:0000576!1.88e-39!63;CL:0000040!1.88e-39!63;CL:0000559!1.88e-39!63;CL:0000839!5.71e-35!70;CL:0000766!1.15e-34!76;CL:0000763!8.11e-26!112;CL:0000049!8.11e-26!112;CL:0002031!1.57e-24!124;CL:0002057!4.49e-24!42;CL:0000738!9.19e-23!140;CL:0000860!3.20e-22!45;CL:0002087!9.16e-22!119;CL:0000840!3.70e-20!5;CL:0001029!3.70e-20!5;CL:0002032!2.72e-18!165;CL:0000837!2.72e-18!165;CL:0000037!2.84e-17!172;CL:0000566!2.84e-17!172;CL:0000235!9.55e-17!10;CL:0000988!5.93e-16!182;CL:0000990!2.44e-13!8;CL:0000451!7.47e-11!10;CL:0001014!9.11e-11!2;CL:0001016!9.11e-11!2 | ||
| | |ontology_enrichment_celltype_v019=CL:0000840;1.57e-68;5!CL:0000990;8.22e-46;8!CL:0000235;9.31e-45;6!CL:0000451;1.54e-37;10!CL:0001014;5.07e-34;2!CL:0001016;5.07e-34;2!CL:0000473;5.99e-16;39!CL:0000234;5.99e-16;39!CL:0000453;2.95e-14;5!CL:0000738;3.09e-07;136 | ||
|ontology_enrichment_celltype_v019_2=CL:0000840,1.27e-68,5;CL:0001029,1.27e-68,5;CL:0000990,7.16e-46,8;CL:0000235,1.17e-44,6;CL:0000451,1.38e-37,10;CL:0002009,2.04e-37,61;CL:0001014,4.29e-34,2;CL:0001016,4.29e-34,2;CL:0000557,4.65e-34,67;CL:0002194,1.03e-26,59;CL:0000576,1.03e-26,59;CL:0000040,1.03e-26,59;CL:0000559,1.03e-26,59;CL:0000839,7.45e-24,66;CL:0000766,7.73e-22,72;CL:0000763,5.64e-21,108;CL:0000049,5.64e-21,108;CL:0002031,8.13e-19,120;CL:0000738,1.60e-16,136;CL:0000473,1.74e-16,48;CL:0000234,1.74e-16,48;CL:0000453,2.76e-14,5;CL:0002032,7.73e-14,161;CL:0000837,7.73e-14,161;CL:0002087,1.82e-13,115;CL:0000037,3.15e-13,168;CL:0000988,1.64e-12,177 | |||
|ontology_enrichment_development_v019=CL:0000049;4.81e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.24e-35!80;UBERON:0001474!9.84e-33!86;UBERON:0004765!5.63e-27!101;UBERON:0001434!5.63e-27!101;UBERON:0002390!1.19e-26!102;UBERON:0003061!1.19e-26!102;UBERON:0002193!9.98e-24!112;UBERON:0002405!5.99e-23!115;UBERON:0002204!1.54e-16!167;UBERON:0003081!1.90e-13!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.34e-30,76;UBERON:0001474,8.85e-28,82;UBERON:0004765,2.83e-25,90;UBERON:0002405,1.92e-24,93;UBERON:0002390,3.59e-23,98;UBERON:0003061,3.59e-23,98;UBERON:0001434,1.07e-22,100;UBERON:0002193,5.64e-21,108;UBERON:0002204,2.60e-13,167;UBERON:0003081,8.49e-11,203 | |||
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|short_description=p@chr6:160406578..160406590,+ | |short_description=p@chr6:160406578..160406590,+ | ||
}} | }} |
Latest revision as of 21:45, 30 July 2015
Short description: | p@chr6:160406578..160406590, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:160406578..160406590, + |
Coexpression cluster: | C314_Macrophage_Dendritic_Monocytederived_CD14_Esophageal_Mast_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 1.27e-68 | 5 |
common dendritic progenitor | 1.27e-68 | 5 |
conventional dendritic cell | 7.16e-46 | 8 |
macrophage | 1.17e-44 | 6 |
dendritic cell | 1.38e-37 | 10 |
macrophage dendritic cell progenitor | 2.04e-37 | 61 |
CD1a-positive Langerhans cell | 4.29e-34 | 2 |
immature CD1a-positive Langerhans cell | 4.29e-34 | 2 |
granulocyte monocyte progenitor cell | 4.65e-34 | 67 |
monopoietic cell | 1.03e-26 | 59 |
monocyte | 1.03e-26 | 59 |
monoblast | 1.03e-26 | 59 |
promonocyte | 1.03e-26 | 59 |
myeloid lineage restricted progenitor cell | 7.45e-24 | 66 |
myeloid leukocyte | 7.73e-22 | 72 |
myeloid cell | 5.64e-21 | 108 |
common myeloid progenitor | 5.64e-21 | 108 |
hematopoietic lineage restricted progenitor cell | 8.13e-19 | 120 |
leukocyte | 1.60e-16 | 136 |
defensive cell | 1.74e-16 | 48 |
phagocyte | 1.74e-16 | 48 |
Langerhans cell | 2.76e-14 | 5 |
hematopoietic oligopotent progenitor cell | 7.73e-14 | 161 |
hematopoietic multipotent progenitor cell | 7.73e-14 | 161 |
nongranular leukocyte | 1.82e-13 | 115 |
hematopoietic stem cell | 3.15e-13 | 168 |
hematopoietic cell | 1.64e-12 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.34e-30 | 76 |
bone element | 8.85e-28 | 82 |
skeletal element | 2.83e-25 | 90 |
immune system | 1.92e-24 | 93 |
hematopoietic system | 3.59e-23 | 98 |
blood island | 3.59e-23 | 98 |
skeletal system | 1.07e-22 | 100 |
hemolymphoid system | 5.64e-21 | 108 |
musculoskeletal system | 2.60e-13 | 167 |
lateral plate mesoderm | 8.49e-11 | 203 |