FFCP PHASE1:Hg19::chr19:38916839..38916871,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115727 | |EntrezGene=115727 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18958 | |HGNC=18958 | ||
|TSSclassifier=strong | |||
|UniProt=C0LTP7,C0LTP6,C0LTP5,C0LTP2,Q8TDF6,C0LTP3,C0LTP4 | |UniProt=C0LTP7,C0LTP6,C0LTP5,C0LTP2,Q8TDF6,C0LTP3,C0LTP4 | ||
|association_with_transcript=73bp_to_ENST00000293062,ENST00000405332,ENST00000426920,ENST00000433821,ENST00000454404,NM_001146202,NM_001146203,NM_001146204,NM_001146205,NM_001146206,NM_001146207,NM_170604,uc002oir.2,uc010egb.2,uc010xua.1,uc010xub.1,uc010xuc.1,uc010xud.1,uc010xue.1_5end | |association_with_transcript=73bp_to_ENST00000293062,ENST00000405332,ENST00000426920,ENST00000433821,ENST00000454404,NM_001146202,NM_001146203,NM_001146204,NM_001146205,NM_001146206,NM_001146207,NM_170604,uc002oir.2,uc010egb.2,uc010xua.1,uc010xub.1,uc010xuc.1,uc010xud.1,uc010xue.1_5end | ||
|cluster_id=chr19:38916839..38916871,- | |||
|coexpression_cluster_id=C246 | |coexpression_cluster_id=C246 | ||
|description=CAGE_peak_1_at_RASGRP4_5end | |description=CAGE_peak_1_at_RASGRP4_5end | ||
|id=chr19:38916839..38916871,- | |id=chr19:38916839..38916871,- | ||
|ontology_enrichment_celltype=CL:0000860;1.14e-26;33!CL:0002057;1.14e-26;33!CL:0000576;6.14e-26;48!CL:0000473;9.50e-26;39!CL:0000234;9.50e-26;39!CL:0000766;2.94e-24;69!CL:0000763;3.92e-21;100!CL:0002087;2.63e-10;104!CL:0000988;3.68e-10;177!CL:0000738;8.75e-10;136!CL:0000094;5.30e-09;8!CL:0000081;9.52e-07;11 | |ontology_enrichment_celltype=CL:0000763!1.30e-61!112;CL:0000049!1.30e-61!112;CL:0000037!4.18e-61!172;CL:0000566!4.18e-61!172;CL:0000988!3.74e-57!182;CL:0002032!1.01e-56!165;CL:0000837!1.01e-56!165;CL:0000766!1.55e-46!76;CL:0000738!6.27e-46!140;CL:0000557!2.65e-41!71;CL:0000839!5.31e-40!70;CL:0002009!1.29e-36!65;CL:0002031!8.91e-36!124;CL:0002194!2.51e-35!63;CL:0000576!2.51e-35!63;CL:0000040!2.51e-35!63;CL:0000559!2.51e-35!63;CL:0002057!5.64e-33!42;CL:0002087!2.14e-32!119;CL:0000860!2.78e-29!45;CL:0002393!3.23e-08!9;CL:0002397!3.23e-08!9;CL:0000094!3.80e-08!8;CL:0000134!9.34e-07!358 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;1.14e-26;33!CL:0002057;1.14e-26;33!CL:0000576;6.14e-26;48!CL:0000473;9.50e-26;39!CL:0000234;9.50e-26;39!CL:0000766;2.94e-24;69!CL:0000763;3.92e-21;100!CL:0002087;2.63e-10;104!CL:0000988;3.68e-10;177!CL:0000738;8.75e-10;136!CL:0000094;5.30e-09;8!CL:0000081;9.52e-07;11 | ||
|ontology_enrichment_disease=DOID:8692;5.21e-13;31!DOID:1240;5.52e-09;39 | |ontology_enrichment_celltype_v019_2=CL:0000763,1.97e-71,108;CL:0000049,1.97e-71,108;CL:0000037,1.55e-59,168;CL:0000766,8.00e-58,72;CL:0000988,1.10e-56,177;CL:0002032,8.34e-55,161;CL:0000837,8.34e-55,161;CL:0000557,1.02e-51,67;CL:0000839,3.54e-50,66;CL:0002009,2.59e-46,61;CL:0002194,7.61e-45,59;CL:0000576,7.61e-45,59;CL:0000040,7.61e-45,59;CL:0000559,7.61e-45,59;CL:0000738,1.84e-44,136;CL:0000473,5.00e-41,48;CL:0000234,5.00e-41,48;CL:0000860,4.86e-37,42;CL:0002057,4.86e-37,42;CL:0002031,3.63e-34,120;CL:0002087,1.51e-30,115;CL:0002393,4.48e-09,9;CL:0002397,4.48e-09,9;CL:0000094,5.38e-09,8;CL:0000134,1.82e-07,354;CL:0000081,9.82e-07,11;CL:0002320,9.91e-07,361 | ||
|ontology_enrichment_uberon=UBERON:0000178;2.13e-12;15!UBERON:0000179;2.13e-12;15!UBERON:0000463;2.13e-12;15!UBERON:0007023;1.05e-07;114!UBERON:0002390;1.44e-07;32 | |ontology_enrichment_development_v019=CL:0002057;1.02e-26;42!CL:0000049;7.82e-19;108 | ||
|ontology_enrichment_disease=DOID:8692!1.93e-13!31;DOID:1240!3.35e-12!39;DOID:2531!1.71e-09!51;DOID:0060083!1.71e-09!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;5.21e-13;31!DOID:1240;5.52e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.75e-13,31;DOID:1240,2.41e-11,39;DOID:2531,6.99e-08,51;DOID:0060083,6.99e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!4.46e-46!102;UBERON:0003061!4.46e-46!102;UBERON:0002193!1.44e-40!112;UBERON:0002371!1.05e-35!80;UBERON:0007023!7.27e-34!115;UBERON:0001474!5.73e-31!86;UBERON:0002405!8.48e-25!115;UBERON:0004765!1.65e-22!101;UBERON:0001434!1.65e-22!101;UBERON:0000178!4.52e-11!15;UBERON:0000179!4.52e-11!15;UBERON:0000463!4.52e-11!15;UBERON:0003081!8.55e-11!216;UBERON:0001049!5.11e-08!57;UBERON:0005068!5.11e-08!57;UBERON:0006241!5.11e-08!57;UBERON:0007135!5.11e-08!57;UBERON:0002204!8.77e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.13e-12;15!UBERON:0000179;2.13e-12;15!UBERON:0000463;2.13e-12;15!UBERON:0007023;1.05e-07;114!UBERON:0002390;1.44e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.39e-56,98;UBERON:0003061,3.39e-56,98;UBERON:0002193,4.33e-50,108;UBERON:0002371,3.62e-45,76;UBERON:0001474,1.10e-39,82;UBERON:0002405,1.41e-38,93;UBERON:0004765,1.42e-33,90;UBERON:0001434,2.09e-27,100;UBERON:0007023,9.64e-27,114;UBERON:0003081,7.44e-18,203;UBERON:0000178,2.70e-12,15;UBERON:0000179,2.70e-12,15;UBERON:0000463,2.70e-12,15;UBERON:0002204,2.05e-09,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0,0,0,0,0,0,0,0,0,0.157421562627358,70.4122055559538,28.4033754591937,56.6627011336838,0,0,0,0.46480320348181,0,3.52320527201817,66.4794490238253,92.049901388795,69.4434786290726,28.4372652284704,21.7008756232716,31.6817948190049,78.8058454185241,56.3035156096326,57.2498384403246,79.9555886955555,46.4619713464663,38.7132963618879,52.9354001872757,57.8923196755767,33.8169588740677,66.1911707014308,61.3210449404635,55.5248595036801,73.790997100701,43.1191717091396,24.4948598045142,55.4011845191334,40.7579864386639,40.2782389253396,82.462825046679,59.6396336288679,54.1305433176522,54.8495461008024,39.7169657283798,37.3693349397345,61.3046743226454,50.5838430867595,52.5597004186382,55.0913547396366,43.8250386825202,31.0133139692067,50.4900134285541,57.4031609905618,27.884599852614,86.0437314582152,84.5495906697681,73.4515931205656,41.8968733299635,60.6695865457225,35.8021741378682,1.75996244461323,3.82297027883492,0,3.84057200309856,0.800791974072025,1.14950487990897,3.96626923670917,0,1.1384259382189,1.17447437874188,1.91136614062614,7.93027971474155,8.96813700770458,3.16060901730092,0.983548850569165,0,1.85041349099558,6.01871383406441,0,0,0,13.3692548262208,2.3568472597987,6.20294904834139,7.04090045789041,41.3734962713931,33.9454897131282,1.47994114143309,1.10540007114339,0.579606171470105,0,0,0,2.71942422474159,0.383220493601921,0,0.253019692019503,0.637130828648193,0,0,4.9689789295665,3.32765189001488,3.74792179657038,6.86654030927649,0.821127996921047,0,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0.175669571386252,3.33996642519167,0,0,4.21911611751088,3.65672448328461,9.57297315735829,11.6860405909618,2.85997455390064,7.4291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,131.780417436063,120.211881885981,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29329006549908,2.25300606146525,1.85910308591229,1.45125477021519,0.756962552626885,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,0.982827216677626,2.95394953340702,3.5317047953172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.8527856391767,4.21207677250628,13.8226980928517,0,0,0,0,0,0,30.5451207495485,119.393676521935,110.920541814313,124.087279892004,113.744432517168,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.6221829667095,24.1083403887421,14.7583757638122,0,0,0,0,0,0,0,2.75843064282698,0.431255149719035,2.18183161675572,0.254094624222463,0,0,0,0,215.714022896789,278.220157059743,284.28904221712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.1167243102764,45.7314105735468,34.579728728316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.41185864310528,1.8300481571743,0,0,0,4.84292754744295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,4.0481834334015,0,0,0,0,97.9373885818087,96.3442880999393,148.677915852456,65.0372746999764,73.2224846093426,114.131302769918,91.8053443304795,111.830649857492,0,0,0,1.11481905075431,0.144269212976445,2.41882267384608,0.318852545457645,4.39074617152197,19.1505370132367,85.0927802550009,7.46630462631478,2.52717460302113,4.10822422259746,0.783399478865116,32.5824820217087,17.2677613357635,5.62058262862948,3.63239472943886,32.7901603021551,32.6330077517976,7.06653757909453,10.9601292867284,7.34136223532397,18.9526452539979,0,4.92349595790849,27.3160235260743,20.6504620158648,4.22961015263549,0,6.29985170869144,0,0,0,0.23874448473769,1.18785872333055,0,0,3.51673541026282,0,0,0,5.18044769452781,2.21027132424918,0,0,18.3396360136994,0,0,0,28.6480527327048,2.95930216910801,43.1069566224492,0,6.78532922266653,1.57705766875147,1.99613798001194,0,0,7.24999575434793,0,0,0,0,0,0,1.77148277162768,1.80894657938112,0,0.663475559587348,1.18219047581419,1.53569778007781,0,0,3.15496059865568,0,0,0,0,0.31900115973192,0.0915975934018623,3.73124343213044,0,0.784901281975124,17.7846499633167,4.51191321234361,4.11731322067253,3.35643173951685,0,5.40384368533288,0,0,0,0,2.98578579323551,2.0345239835768,4.888241159469,1.48260564340311,1.48276726735803,2.08843899010911,3.70706231393724,5.61804353109152,1.63985112007737,0,0,0,0.789168805698781,6.04953580243319,0.61214552326098,14.5329133145522,0,0,0,0,0,0,0,0,0,0,0,4.36816670605075,0,0,0,0,2.42472541221049,0,0.90392296312213,0,0,1.2029051231617,0,0,4.90941887900511,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,4.79168826121976,3.83239764200917,0,25.7629607193728,2.23425921017803,2.52076466412852,5.0251111720377,1.99679000498991,4.29226048136571,1.56220020209311,2.14987111957524,0,0,0,0,0,0,0,0.795229689809303,4.08610218334727,1.92903778158023,1.78801267576404,1.66176135211674,20.4726241311865,23.9878605912964,1.57948847310864,0,1.97014268247995,1.10154635083496,0,0,0,12.8645158747206,9.93137955548147,0,0,0,0,0,3.61207091297091,0,0,2.34483573884932,5.30027555648885,2.58565912723101,2.644652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| 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| ||
|short_description=p1@RASGRP4 | |short_description=p1@RASGRP4 | ||
}} | }} |
Latest revision as of 19:43, 17 September 2015
Short description: | p1@RASGRP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RASGRP4_5end |
Coexpression cluster: | C246_Neutrophils_Eosinophils_Whole_CD14_CD14CD16_Basophils_migratory |
Association with transcript: | 73bp_to_ENST00000293062, ENST00000405332, ENST00000426920, ENST00000433821, ENST00000454404, NM_001146202, NM_001146203, NM_001146204, NM_001146205, NM_001146206, NM_001146207, NM_170604, uc002oir.2, uc010egb.2, uc010xua.1, uc010xub.1, uc010xuc.1, uc010xud.1, uc010xue.1_5end |
EntrezGene: | RASGRP4 |
HGNC: | 18958 |
UniProt: | C0LTP7C0LTP6C0LTP5C0LTP2Q8TDF6C0LTP3C0LTP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.97e-71 | 108 |
common myeloid progenitor | 1.97e-71 | 108 |
hematopoietic stem cell | 1.55e-59 | 168 |
myeloid leukocyte | 8.00e-58 | 72 |
hematopoietic cell | 1.10e-56 | 177 |
hematopoietic oligopotent progenitor cell | 8.34e-55 | 161 |
hematopoietic multipotent progenitor cell | 8.34e-55 | 161 |
granulocyte monocyte progenitor cell | 1.02e-51 | 67 |
myeloid lineage restricted progenitor cell | 3.54e-50 | 66 |
macrophage dendritic cell progenitor | 2.59e-46 | 61 |
monopoietic cell | 7.61e-45 | 59 |
monocyte | 7.61e-45 | 59 |
monoblast | 7.61e-45 | 59 |
promonocyte | 7.61e-45 | 59 |
leukocyte | 1.84e-44 | 136 |
defensive cell | 5.00e-41 | 48 |
phagocyte | 5.00e-41 | 48 |
classical monocyte | 4.86e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.86e-37 | 42 |
hematopoietic lineage restricted progenitor cell | 3.63e-34 | 120 |
nongranular leukocyte | 1.51e-30 | 115 |
intermediate monocyte | 4.48e-09 | 9 |
CD14-positive, CD16-positive monocyte | 4.48e-09 | 9 |
granulocyte | 5.38e-09 | 8 |
mesenchymal cell | 1.82e-07 | 354 |
blood cell | 9.82e-07 | 11 |
connective tissue cell | 9.91e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.39e-56 | 98 |
blood island | 3.39e-56 | 98 |
hemolymphoid system | 4.33e-50 | 108 |
bone marrow | 3.62e-45 | 76 |
bone element | 1.10e-39 | 82 |
immune system | 1.41e-38 | 93 |
skeletal element | 1.42e-33 | 90 |
skeletal system | 2.09e-27 | 100 |
adult organism | 9.64e-27 | 114 |
lateral plate mesoderm | 7.44e-18 | 203 |
blood | 2.70e-12 | 15 |
haemolymphatic fluid | 2.70e-12 | 15 |
organism substance | 2.70e-12 | 15 |
musculoskeletal system | 2.05e-09 | 167 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.75e-13 | 31 |
leukemia | 2.41e-11 | 39 |
hematologic cancer | 6.99e-08 | 51 |
immune system cancer | 6.99e-08 | 51 |