FFCP PHASE1:Hg19::chr4:76944597..76944606,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3627 | |EntrezGene=3627 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10637 | |HGNC=10637 | ||
|TSSclassifier=strong | |||
|UniProt=P02778 | |UniProt=P02778 | ||
|association_with_transcript=43bp_to_ENST00000306602,uc003hjl.3_5end | |association_with_transcript=43bp_to_ENST00000306602,uc003hjl.3_5end | ||
|cluster_id=chr4:76944597..76944606,- | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_3_at_CXCL10_5end | |description=CAGE_peak_3_at_CXCL10_5end | ||
|id=chr4:76944597..76944606,- | |id=chr4:76944597..76944606,- | ||
|ontology_enrichment_celltype=CL:0000860;1.07e-64;33!CL:0002057;1.07e-64;33!CL:0000473;1.08e-49;39!CL:0000234;1.08e-49;39!CL:0000576;2.78e-33;48!CL:0000766;3.74e-17;69!CL:0000763;1.28e-12;100!CL:0002087;6.59e-09;104 | |ontology_enrichment_celltype=CL:0002057!1.01e-46!42;CL:0000860!2.02e-43!45;CL:0002194!1.10e-33!63;CL:0000576!1.10e-33!63;CL:0000040!1.10e-33!63;CL:0000559!1.10e-33!63;CL:0002009!1.42e-32!65;CL:0000839!4.54e-30!70;CL:0000557!1.31e-29!71;CL:0000766!1.72e-27!76;CL:0000763!9.18e-18!112;CL:0000049!9.18e-18!112;CL:0002087!1.51e-16!119;CL:0002031!9.20e-16!124;CL:0000738!1.27e-13!140;CL:0002032!4.20e-11!165;CL:0000837!4.20e-11!165;CL:0000037!1.58e-10!172;CL:0000566!1.58e-10!172;CL:0000988!8.79e-10!182;CL:0002379!3.53e-09!1 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;1.07e-64;33!CL:0002057;1.07e-64;33!CL:0000473;1.08e-49;39!CL:0000234;1.08e-49;39!CL:0000576;2.78e-33;48!CL:0000766;3.74e-17;69!CL:0000763;1.28e-12;100!CL:0002087;6.59e-09;104 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0000473,2.29e-56,48;CL:0000234,2.29e-56,48;CL:0000860,1.13e-55,42;CL:0002057,1.13e-55,42;CL:0002194,6.85e-45,59;CL:0000576,6.85e-45,59;CL:0000040,6.85e-45,59;CL:0000559,6.85e-45,59;CL:0002009,2.08e-43,61;CL:0000839,4.32e-40,66;CL:0000557,1.74e-39,67;CL:0000766,1.05e-36,72;CL:0000763,3.32e-24,108;CL:0000049,3.32e-24,108;CL:0002087,1.13e-22,115;CL:0002031,1.10e-21,120;CL:0000738,5.24e-19,136;CL:0002032,7.09e-16,161;CL:0000837,7.09e-16,161;CL:0000037,3.65e-15,168;CL:0000988,2.49e-14,177 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019=CL:0002057;1.59e-37;42!CL:0000049;1.67e-09;108 | ||
|ontology_enrichment_disease=DOID:3620!3.53e-09!1;DOID:3565!3.53e-09!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.51e-26!80;UBERON:0001474!5.52e-24!86;UBERON:0004765!1.38e-22!101;UBERON:0001434!1.38e-22!101;UBERON:0002390!2.52e-22!102;UBERON:0003061!2.52e-22!102;UBERON:0002193!4.57e-20!112;UBERON:0002405!1.83e-19!115;UBERON:0003127!1.57e-16!2;UBERON:0002204!1.92e-12!167;UBERON:0002038!4.50e-09!1;UBERON:0009661!4.50e-09!1;UBERON:0003081!6.92e-09!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,9.63e-35,76;UBERON:0001474,3.76e-32,82;UBERON:0004765,3.18e-29,90;UBERON:0002405,2.96e-28,93;UBERON:0002390,9.06e-27,98;UBERON:0003061,9.06e-27,98;UBERON:0001434,3.24e-26,100;UBERON:0002193,3.32e-24,108;UBERON:0002204,2.91e-15,167;UBERON:0003081,2.49e-12,203;UBERON:0000926,1.94e-07,315;UBERON:0004120,1.94e-07,315;UBERON:0006603,1.94e-07,315 | |||
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|short_description=p3@CXCL10 | |short_description=p3@CXCL10 | ||
}} | }} |
Latest revision as of 17:13, 18 September 2015
Short description: | p3@CXCL10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CXCL10_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 43bp_to_ENST00000306602, uc003hjl.3_5end |
EntrezGene: | CXCL10 |
HGNC: | 10637 |
UniProt: | P02778 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.29e-56 | 48 |
phagocyte | 2.29e-56 | 48 |
classical monocyte | 1.13e-55 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.13e-55 | 42 |
monopoietic cell | 6.85e-45 | 59 |
monocyte | 6.85e-45 | 59 |
monoblast | 6.85e-45 | 59 |
promonocyte | 6.85e-45 | 59 |
macrophage dendritic cell progenitor | 2.08e-43 | 61 |
myeloid lineage restricted progenitor cell | 4.32e-40 | 66 |
granulocyte monocyte progenitor cell | 1.74e-39 | 67 |
myeloid leukocyte | 1.05e-36 | 72 |
myeloid cell | 3.32e-24 | 108 |
common myeloid progenitor | 3.32e-24 | 108 |
nongranular leukocyte | 1.13e-22 | 115 |
hematopoietic lineage restricted progenitor cell | 1.10e-21 | 120 |
leukocyte | 5.24e-19 | 136 |
hematopoietic oligopotent progenitor cell | 7.09e-16 | 161 |
hematopoietic multipotent progenitor cell | 7.09e-16 | 161 |
hematopoietic stem cell | 3.65e-15 | 168 |
hematopoietic cell | 2.49e-14 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 9.63e-35 | 76 |
bone element | 3.76e-32 | 82 |
skeletal element | 3.18e-29 | 90 |
immune system | 2.96e-28 | 93 |
hematopoietic system | 9.06e-27 | 98 |
blood island | 9.06e-27 | 98 |
skeletal system | 3.24e-26 | 100 |
hemolymphoid system | 3.32e-24 | 108 |
musculoskeletal system | 2.91e-15 | 167 |
lateral plate mesoderm | 2.49e-12 | 203 |
mesoderm | 1.94e-07 | 315 |
mesoderm-derived structure | 1.94e-07 | 315 |
presumptive mesoderm | 1.94e-07 | 315 |