FFCP PHASE1:Hg19::chr5:74807616..74807619,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10087 | |EntrezGene=10087 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2205 | |HGNC=2205 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y5P4 | |UniProt=Q9Y5P4 | ||
|association_with_transcript=-162bp_to_ENST00000261415,NM_005713,NM_031361,uc003kds.2,uc003kdu.2,uc011csu.1_5end | |association_with_transcript=-162bp_to_ENST00000261415,NM_005713,NM_031361,uc003kds.2,uc003kdu.2,uc011csu.1_5end | ||
|cluster_id=chr5:74807616..74807619,- | |||
|description=CAGE_peak_5_at_COL4A3BP_5end | |description=CAGE_peak_5_at_COL4A3BP_5end | ||
|id=chr5:74807616..74807619,- | |id=chr5:74807616..74807619,- | ||
|ontology_enrichment_celltype=CL:0000236;2.13e-29;13!CL:0000542;1.96e-18;53!CL:0000945;1.34e-15;24!CL:0000623;1.35e-11;3!CL:0000791;4.78e-11;18!CL:0000789;4.78e-11;18!CL:0002419;4.78e-11;18!CL:0002087;4.14e-10;104!CL:0000084;6.68e-08;25!CL:0000625;3.57e-07;11 | |ontology_enrichment_celltype=CL:0000738!5.57e-39!140;CL:0002087!1.48e-36!119;CL:0002031!3.82e-36!124;CL:0002032!1.12e-32!165;CL:0000837!1.12e-32!165;CL:0000037!2.77e-32!172;CL:0000566!2.77e-32!172;CL:0000988!1.10e-29!182;CL:0002057!6.40e-23!42;CL:0000860!1.05e-21!45;CL:0000542!2.71e-20!53;CL:0000051!2.71e-20!53;CL:0000766!6.92e-20!76;CL:0000838!1.49e-19!52;CL:0000839!2.23e-17!70;CL:0000557!6.27e-16!71;CL:0002194!3.72e-15!63;CL:0000576!3.72e-15!63;CL:0000040!3.72e-15!63;CL:0000559!3.72e-15!63;CL:0002009!2.65e-14!65;CL:0000763!9.83e-14!112;CL:0000049!9.83e-14!112;CL:0000791!8.55e-12!18;CL:0000789!8.55e-12!18;CL:0002420!8.55e-12!18;CL:0002419!8.55e-12!18;CL:0000790!8.55e-12!18;CL:0000084!3.22e-09!25;CL:0000827!3.22e-09!25;CL:0000945!5.10e-09!24;CL:0000826!5.10e-09!24;CL:0000625!1.42e-07!11;CL:0000236!1.82e-07!14;CL:0002393!6.36e-07!9;CL:0002397!6.36e-07!9 | ||
| | |ontology_enrichment_celltype_v019=CL:0000236;2.13e-29;13!CL:0000542;1.96e-18;53!CL:0000945;1.34e-15;24!CL:0000623;1.35e-11;3!CL:0000791;4.78e-11;18!CL:0000789;4.78e-11;18!CL:0002419;4.78e-11;18!CL:0002087;4.14e-10;104!CL:0000084;6.68e-08;25!CL:0000625;3.57e-07;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.60e-27,52;CL:0000236,2.19e-27,14;CL:0000542,5.87e-27,53;CL:0000051,5.87e-27,53;CL:0000738,9.73e-25,136;CL:0002087,3.38e-24,115;CL:0002031,4.68e-23,120;CL:0002032,2.31e-20,161;CL:0000837,2.31e-20,161;CL:0000037,2.28e-19,168;CL:0000988,3.34e-18,177;CL:0000945,1.12e-15,24;CL:0000826,1.12e-15,24;CL:0000623,2.57e-11,3;CL:0000825,2.57e-11,3;CL:0000791,5.23e-11,18;CL:0000789,5.23e-11,18;CL:0002420,5.23e-11,18;CL:0002419,5.23e-11,18;CL:0000790,5.23e-11,18;CL:0000084,7.11e-08,25;CL:0000827,7.11e-08,25;CL:0000134,3.13e-07,354;CL:0000625,3.81e-07,11;CL:0002320,5.14e-07,361 | |||
|ontology_enrichment_development_v019=CL:0000051;1.96e-18;53!CL:0000790;4.78e-11;18!UBERON:0005425;2.54e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000941;2.54e-09;1!UBERON:0001785;2.54e-09;1!UBERON:0002464;2.54e-09;1!UBERON:0004904;2.54e-09;1!UBERON:0001021;2.54e-09;1 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.18e-17!112;UBERON:0002390!2.04e-16!102;UBERON:0003061!2.04e-16!102;UBERON:0002371!2.23e-13!80;UBERON:0002405!2.92e-13!115;UBERON:0001474!1.63e-11!86;UBERON:0004765!5.70e-08!101;UBERON:0001434!5.70e-08!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.54e-09;1!UBERON:0001785;2.54e-09;1!UBERON:0002464;2.54e-09;1!UBERON:0004904;2.54e-09;1!UBERON:0001021;2.54e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,2.16e-09,1;UBERON:0001785,2.16e-09,1;UBERON:0002464,2.16e-09,1;UBERON:0004904,2.16e-09,1;UBERON:0001021,2.16e-09,1;UBERON:0003902,2.16e-09,1;UBERON:0005425,2.16e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.236132343941038,0,0.767658796194425,0.77408061658038,0,0,0,0.387336002901508,0.142169232487422,0,3.32397245119126,0.200544447470142,0.651032612147555,0,0.32389366601898,0,0.581592955118259,0,0,0.697287110717054,0,0.309706370895104,1.43846196161075,0,0.47296445977717,0.344745680736619,0.645484683583826,1.35426486594342,0.752969358170419,0,0.224723484445085,0.306083892370903,0.962787081228281,0.639337125799041,0.329851300186716,0.199463657621632,0.426224750532694,1.7412554317715,1.70215567407342,1.24564449799115,0.502497330513487,0.521482918420201,0.65156653411535,0,0.736555271975129,0.949387162322653,0,0.425208599930087,0.209658645508376,0.112328631146495,0,0.16072558669708,0.285012743741249,0.39783335439818,0.365328307529268,1.75996244461323,1.63841583378639,2.66852776159066,0.426730222566507,0,0.574752439954483,1.32208974556972,0,1.1384259382189,1.76171156811282,1.14681968437569,0,0.560508562981536,0,1.180258620683,0.786021525498329,0.411202997999018,0.167186495390678,1.62961133316795,0,0,0,0.589211814949674,0.443067789167242,0.541607727530031,0,0.260118695119756,0,0.276350017785848,0,0.444859689486181,0,0,0,0,0.68725489096526,0.253019692019503,0.318565414324097,0,0,0.301150238155546,0.383959833463255,1.24930726552346,0.236777252044017,0.821127996921047,2.21767417547206,1.33720097891754,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0.33472061276467,0,0,0,0,0,0,0,0.225222960966644,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0.352193736052904,0.207328115540772,0.576479813667846,0.37872730027914,0.063497894292169,0.381988425558278,0,0,0,0.300343057843917,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0.112085143993527,1.18218456121156,0.646882724578552,1.15508732651774,0,0,0,0,0,0.749007023947182,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0.413536052245775,0,0.853820462427555,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0.275673144969061,0,0,0.0852266274161009,0.0890320356467374,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.952927101831156,0.411362273086194,0,1.62009431171434,0,0,0,0,0.371606350251437,0.144269212976445,0.142283686696828,0,0,0,0,0,0,0,0.156679895773023,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0.276283915531148,0,0.102268682502155,0.123084805461069,0,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0.166211681900156,0,0,0.335643173951685,0,0.158936578980379,0.210998064528027,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0.394584402849391,0,0.61214552326098,0.252746318513952,0.450970258243478,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,0.171986032471617,0.0967563312890851,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0.262887354279314,0,0,0.717873024576814,0,0.429226048136571,0,0.0671834724867263,0,0,0.0787831823072236,0,0.0674035438541849,0.0984274815147488,0,0.795229689809303,0,0,0.137539436597234,0,0,0,0.0607495566580247,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0.496166021811951,0.197611631897944,0.243585196761792,0,0,0,0,0,0,0,0.244052529803926,0.250381861413,0,0.110929051536852,0.124192805882767,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0.247871528518004,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.203909198930495,0.131545547125698,0,0,0.156986185701028,0.157115589916002,0,0,0.215927591218621,0,0.0714765441766563,0,0.348724276104376,0,0,0,0,0,0,0,0,0,0,0,0,0.335566295393377,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.375935671919414,0.386747327841463,0,0,0,0.240724100067505,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0,0.378499274505237,0.327796715891087,0,0,0,0.275684698604535,0,0.454672189309436,0.267964130156178,0,0,0,0,1.0980114672121,0.993195428733726,0,0.0636471582781649,0.202117188958219,0,0,0.404112318087525,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.236132343941038,0,0.767658796194425,0.77408061658038,0,0,0,0.387336002901508,0.142169232487422,0,3.32397245119126,0.200544447470142,0.651032612147555,0,0.32389366601898,0,0.581592955118259,0,0,0.697287110717054,0,0.309706370895104,1.43846196161075,0,0.47296445977717,0.344745680736619,0.645484683583826,1.35426486594342,0.752969358170419,0,0.224723484445085,0.306083892370903,0.962787081228281,0.639337125799041,0.329851300186716,0.199463657621632,0.426224750532694,1.7412554317715,1.70215567407342,1.24564449799115,0.502497330513487,0.521482918420201,0.65156653411535,0,0.736555271975129,0.949387162322653,0,0.425208599930087,0.209658645508376,0.112328631146495,0,0.16072558669708,0.285012743741249,0.39783335439818,0.365328307529268,1.75996244461323,1.63841583378639,2.66852776159066,0.426730222566507,0,0.574752439954483,1.32208974556972,0,1.1384259382189,1.76171156811282,1.14681968437569,0,0.560508562981536,0,1.180258620683,0.786021525498329,0.411202997999018,0.167186495390678,1.62961133316795,0,0,0,0.589211814949674,0.443067789167242,0.541607727530031,0,0.260118695119756,0,0.276350017785848,0,0.444859689486181,0,0,0,0,0.68725489096526,0.253019692019503,0.318565414324097,0,0,0.301150238155546,0.383959833463255,1.24930726552346,0.236777252044017,0.821127996921047,2.21767417547206,1.33720097891754,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0.33472061276467,0,0,0,0,0,0,0,0.225222960966644,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0.352193736052904,0.207328115540772,0.576479813667846,0.37872730027914,0.063497894292169,0.381988425558278,0,0,0,0.300343057843917,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0.112085143993527,1.18218456121156,0.646882724578552,1.15508732651774,0,0,0,0,0,0.749007023947182,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0.413536052245775,0,0.853820462427555,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0.275673144969061,0,0,0.0852266274161009,0.0890320356467374,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.952927101831156,0.411362273086194,0,1.62009431171434,0,0,0,0,0.371606350251437,0.144269212976445,0.142283686696828,0,0,0,0,0,0,0,0.156679895773023,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0,0.276283915531148,0,0.102268682502155,0.123084805461069,0,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0.295547618953547,0,0,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0.166211681900156,0,0,0.335643173951685,0,0.158936578980379,0.210998064528027,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0.394584402849391,0,0.61214552326098,0.252746318513952,0.450970258243478,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0,0.171986032471617,0.0967563312890851,0,0,0,0,0,0,0.19871461170299,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0.262887354279314,0,0,0.717873024576814,0,0.429226048136571,0,0.0671834724867263,0,0,0.0787831823072236,0,0.0674035438541849,0.0984274815147488,0,0.795229689809303,0,0,0.137539436597234,0,0,0,0.0607495566580247,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0.106787412567695,0,0,0.496166021811951,0.197611631897944,0.243585196761792,0,0,0,0,0,0,0,0.244052529803926,0.250381861413,0,0.110929051536852,0.124192805882767,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218419276384028,0,0,0.247871528518004,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0.203909198930495,0.131545547125698,0,0,0.156986185701028,0.157115589916002,0,0,0.215927591218621,0,0.0714765441766563,0,0.348724276104376,0,0,0,0,0,0,0,0,0,0,0,0,0.335566295393377,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.375935671919414,0.386747327841463,0,0,0,0.240724100067505,0,0,0.143339583151451,0,0.135982980381829,0,0,0,0,0,0.378499274505237,0.327796715891087,0,0,0,0.275684698604535,0,0.454672189309436,0.267964130156178,0,0,0,0,1.0980114672121,0.993195428733726,0,0.0636471582781649,0.202117188958219,0,0,0.404112318087525,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | ||
|short_description=p5@COL4A3BP | |short_description=p5@COL4A3BP | ||
}} | }} |
Latest revision as of 17:34, 18 September 2015
Short description: | p5@COL4A3BP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL4A3BP_5end |
Coexpression cluster: | NA |
Association with transcript: | -162bp_to_ENST00000261415, NM_005713, NM_031361, uc003kds.2, uc003kdu.2, uc011csu.1_5end |
EntrezGene: | COL4A3BP |
HGNC: | 2205 |
UniProt: | Q9Y5P4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.60e-27 | 52 |
B cell | 2.19e-27 | 14 |
lymphocyte | 5.87e-27 | 53 |
common lymphoid progenitor | 5.87e-27 | 53 |
leukocyte | 9.73e-25 | 136 |
nongranular leukocyte | 3.38e-24 | 115 |
hematopoietic lineage restricted progenitor cell | 4.68e-23 | 120 |
hematopoietic oligopotent progenitor cell | 2.31e-20 | 161 |
hematopoietic multipotent progenitor cell | 2.31e-20 | 161 |
hematopoietic stem cell | 2.28e-19 | 168 |
hematopoietic cell | 3.34e-18 | 177 |
lymphocyte of B lineage | 1.12e-15 | 24 |
pro-B cell | 1.12e-15 | 24 |
natural killer cell | 2.57e-11 | 3 |
pro-NK cell | 2.57e-11 | 3 |
mature alpha-beta T cell | 5.23e-11 | 18 |
alpha-beta T cell | 5.23e-11 | 18 |
immature T cell | 5.23e-11 | 18 |
mature T cell | 5.23e-11 | 18 |
immature alpha-beta T cell | 5.23e-11 | 18 |
T cell | 7.11e-08 | 25 |
pro-T cell | 7.11e-08 | 25 |
mesenchymal cell | 3.13e-07 | 354 |
CD8-positive, alpha-beta T cell | 3.81e-07 | 11 |
connective tissue cell | 5.14e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 2.16e-09 | 1 |
cranial nerve | 2.16e-09 | 1 |
nerve trunk | 2.16e-09 | 1 |
nerve connecting eye with brain | 2.16e-09 | 1 |
nerve | 2.16e-09 | 1 |
retinal neural layer | 2.16e-09 | 1 |
presumptive neural retina | 2.16e-09 | 1 |