FFCP PHASE1:Hg19::chr1:153534027..153534037,+: Difference between revisions
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|id=chr1:153534027..153534037,+
|short_description=p@chr1:153534027..153534037,+
|description=CAGE_peak_at_chr1:153534027..153534037,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:153534027..153534037,+ | |||
|coexpression_cluster_id=C688 | |||
|description=CAGE_peak_at_chr1:153534027..153534037,+ | |||
|id=chr1:153534027..153534037,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.71e-31!43;CL:0000066!9.60e-22!254;CL:0000223!1.81e-21!59;CL:0002368!3.68e-21!13;CL:0002159!3.44e-17!13;CL:0000244!3.62e-15!4;CL:0000731!3.62e-15!4;CL:0002251!4.65e-15!21;CL:0002621!3.61e-12!3;CL:0002328!4.34e-12!3;CL:0002166!8.66e-12!3;CL:0000076!1.61e-10!62;CL:0002202!2.35e-10!9;CL:0002632!2.35e-10!9;CL:0002077!4.34e-09!33;CL:0000575!1.44e-08!2;CL:0002327!1.80e-08!4;CL:0000220!1.06e-07!246;CL:0002321!1.40e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002621;7.51e-43;3!CL:0002076;3.33e-21;42!CL:0002328;2.48e-20;3!CL:0002368;5.63e-18;13!CL:0002159;1.69e-16;14!CL:0002202;4.15e-15;9!CL:0002632;4.15e-15;9!CL:0000312;3.35e-12;5!CL:0002251;1.34e-11;20!CL:0000240;2.52e-10;6!CL:0000311;2.52e-10;6!CL:0000079;2.52e-10;6!CL:0000237;2.52e-10;6!CL:0000575;2.40e-08;2!CL:0000362;3.55e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,1.91e-42,3;CL:0002076,1.87e-26,42;CL:0002328,2.48e-20,3;CL:0000223,6.06e-19,58;CL:0002368,5.40e-18,13;CL:0002159,1.41e-16,14;CL:0002202,4.06e-15,9;CL:0002632,4.06e-15,9;CL:0000312,2.99e-12,5;CL:0002251,1.62e-11,20;CL:0000240,2.29e-10,6;CL:0000311,2.29e-10,6;CL:0000079,2.29e-10,6;CL:0000237,2.29e-10,6;CL:0000036,2.29e-10,6;CL:0000357,2.29e-10,6;CL:0000114,2.29e-10,6;CL:0000066,1.15e-09,253;CL:0000575,2.00e-08,2;CL:0002321,3.40e-08,250;CL:0000362,3.34e-07,9;CL:0002077,5.63e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000357;2.52e-10;6!CL:0000114;2.52e-10;6!CL:0000223;3.31e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!8.46e-18!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000161!5.79e-19!35;UBERON:0000365!4.02e-18!5;UBERON:0001004!2.20e-16!72;UBERON:0005910!4.74e-15!6;UBERON:0000166!6.58e-15!21;UBERON:0004119!1.72e-14!169;UBERON:0000925!1.72e-14!169;UBERON:0006595!1.72e-14!169;UBERON:0000165!5.89e-13!28;UBERON:0000930!5.89e-13!28;UBERON:0001949!3.61e-12!3;UBERON:0004815!4.34e-12!3;UBERON:0002031!4.34e-12!3;UBERON:0003102!3.24e-11!95;UBERON:0003729!6.80e-11!5;UBERON:0000065!8.11e-10!53;UBERON:0001444!1.32e-09!48;UBERON:0000344!1.90e-09!12;UBERON:0002185!3.66e-09!4;UBERON:0001708!6.11e-09!4;UBERON:0001704!6.11e-09!4;UBERON:0007196!7.03e-09!14;UBERON:0001558!7.03e-09!14;UBERON:0001911!1.80e-08!4;UBERON:0005333!1.80e-08!4;UBERON:0008425!1.80e-08!4;UBERON:0005311!1.80e-08!4;UBERON:0003343!5.37e-08!4;UBERON:0004785!5.37e-08!4;UBERON:0001007!6.09e-08!155;UBERON:0001555!6.09e-08!155;UBERON:0007026!6.09e-08!155;UBERON:0005153!1.19e-07!37;UBERON:0005157!1.60e-07!51;UBERON:0001828!1.61e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;7.51e-43;3!UBERON:0004815;2.48e-20;3!UBERON:0002031;2.48e-20;3!UBERON:0000486;4.09e-19;12!UBERON:0003929;8.28e-19;7!UBERON:0003350;1.53e-16;8!UBERON:0001828;1.53e-16;8!UBERON:0004807;2.98e-16;22!UBERON:0002185;1.34e-12;5!UBERON:0005911;1.42e-12;36!UBERON:0000161;3.39e-12;19!UBERON:0000166;3.39e-12;19!UBERON:0010371;2.28e-11;31!UBERON:0003729;2.03e-10;13!UBERON:0007196;2.67e-09;15!UBERON:0001558;2.67e-09;15!UBERON:0000485;2.92e-09;7!UBERON:0000165;2.33e-08;28!UBERON:0000344;5.86e-07;20!UBERON:0004119;9.86e-07;158 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.91e-42,3;UBERON:0004815,2.48e-20,3;UBERON:0002031,2.48e-20,3;UBERON:0003350,2.15e-16,8;UBERON:0001828,2.15e-16,8;UBERON:0004807,1.05e-12,28;UBERON:0002185,1.34e-12,5;UBERON:0001004,1.41e-11,74;UBERON:0003102,1.08e-10,99;UBERON:0000166,1.70e-10,22;UBERON:0003729,2.50e-10,13;UBERON:0000161,8.83e-10,36;UBERON:0007196,2.63e-09,15;UBERON:0001558,2.63e-09,15;UBERON:0000033,7.88e-09,56;UBERON:0000165,5.07e-08,29;UBERON:0000930,5.07e-08,29;UBERON:0005911,5.44e-08,82;UBERON:0000153,6.05e-08,62;UBERON:0007811,6.05e-08,62;UBERON:0004119,9.21e-08,160;UBERON:0000925,9.21e-08,160;UBERON:0006595,9.21e-08,160;UBERON:0000485,2.15e-07,9;UBERON:0001444,3.69e-07,49;UBERON:0000344,6.70e-07,20 | |||
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| ||
|short_description=p@chr1:153534027..153534037,+ | |||
}} | }} |
Latest revision as of 21:44, 27 July 2015
Short description: | p@chr1:153534027..153534037, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:153534027..153534037, + |
Coexpression cluster: | C688_Bronchial_Tracheal_Corneal_Prostate_Urothelial_Mallassezderived_Sebocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 1.91e-42 | 3 |
endo-epithelial cell | 1.87e-26 | 42 |
bronchial epithelial cell | 2.48e-20 | 3 |
endodermal cell | 6.06e-19 | 58 |
respiratory epithelial cell | 5.40e-18 | 13 |
general ecto-epithelial cell | 1.41e-16 | 14 |
epithelial cell of tracheobronchial tree | 4.06e-15 | 9 |
epithelial cell of lower respiratory tract | 4.06e-15 | 9 |
keratinocyte | 2.99e-12 | 5 |
epithelial cell of alimentary canal | 1.62e-11 | 20 |
stratified squamous epithelial cell | 2.29e-10 | 6 |
keratin accumulating cell | 2.29e-10 | 6 |
stratified epithelial cell | 2.29e-10 | 6 |
keratinizing barrier epithelial cell | 2.29e-10 | 6 |
epithelial fate stem cell | 2.29e-10 | 6 |
stratified epithelial stem cell | 2.29e-10 | 6 |
surface ectodermal cell | 2.29e-10 | 6 |
epithelial cell | 1.15e-09 | 253 |
corneal epithelial cell | 2.00e-08 | 2 |
embryonic cell | 3.40e-08 | 250 |
epidermal cell | 3.34e-07 | 9 |
ecto-epithelial cell | 5.63e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.91e-42 | 3 |
lower respiratory tract epithelium | 2.48e-20 | 3 |
epithelium of bronchus | 2.48e-20 | 3 |
epithelium of mucosa | 2.15e-16 | 8 |
gingiva | 2.15e-16 | 8 |
respiratory system epithelium | 1.05e-12 | 28 |
bronchus | 1.34e-12 | 5 |
respiratory system | 1.41e-11 | 74 |
surface structure | 1.08e-10 | 99 |
oral opening | 1.70e-10 | 22 |
mouth mucosa | 2.50e-10 | 13 |
orifice | 8.83e-10 | 36 |
tracheobronchial tree | 2.63e-09 | 15 |
lower respiratory tract | 2.63e-09 | 15 |
head | 7.88e-09 | 56 |
mouth | 5.07e-08 | 29 |
stomodeum | 5.07e-08 | 29 |
endo-epithelium | 5.44e-08 | 82 |
anterior region of body | 6.05e-08 | 62 |
craniocervical region | 6.05e-08 | 62 |
endoderm-derived structure | 9.21e-08 | 160 |
endoderm | 9.21e-08 | 160 |
presumptive endoderm | 9.21e-08 | 160 |
simple columnar epithelium | 2.15e-07 | 9 |
subdivision of head | 3.69e-07 | 49 |
mucosa | 6.70e-07 | 20 |