FFCP PHASE1:Hg19::chr1:200452556..200452567,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:200452556..200452567,- | |||
|coexpression_cluster_id=C1842 | |coexpression_cluster_id=C1842 | ||
|description=CAGE_peak_at_chr1:200452556..200452567,- | |description=CAGE_peak_at_chr1:200452556..200452567,- | ||
|id=chr1:200452556..200452567,- | |id=chr1:200452556..200452567,- | ||
|ontology_enrichment_celltype=CL:0002580;2.28e-31;3!CL:0002579;3.18e-30;3!CL:0002334;8.83e-30;12!CL:0000214;2.12e-14;3!CL:0000135;2.96e-14;3!CL:0000388;2.96e-14;3!CL:0000511;3.81e-11;1!CL:0002625;3.81e-11;1!CL:0000216;3.81e-11;1 | |ontology_enrichment_celltype=CL:0000057!6.56e-16!75;CL:0002334!6.00e-15!12;CL:0000055!1.70e-12!180;CL:0002580!1.80e-10!3;CL:0002620!3.28e-10!23;CL:0000135!4.85e-10!3;CL:0000386!4.85e-10!3;CL:0000388!4.85e-10!3;CL:0002579!5.62e-10!3;CL:0000153!2.90e-08!9;CL:0000447!2.90e-08!9;CL:0000188!8.38e-07!9 | ||
| | |ontology_enrichment_celltype_v019=CL:0002580;2.28e-31;3!CL:0002579;3.18e-30;3!CL:0002334;8.83e-30;12!CL:0000214;2.12e-14;3!CL:0000135;2.96e-14;3!CL:0000388;2.96e-14;3!CL:0000511;3.81e-11;1!CL:0002625;3.81e-11;1!CL:0000216;3.81e-11;1 | ||
|ontology_enrichment_disease=DOID:6193;1.01e-11;1!DOID:4235;1.69e-11;1 | |ontology_enrichment_celltype_v019_2=CL:0002580,1.60e-31,3;CL:0002579,7.46e-30,3;CL:0002334,1.14e-29,12;CL:0000214,1.98e-14,3;CL:0000135,2.12e-14,3;CL:0000388,2.12e-14,3;CL:0000511,3.28e-11,1;CL:0002625,3.28e-11,1;CL:0000216,3.28e-11,1;CL:0000057,1.79e-09,76 | ||
|ontology_enrichment_uberon=UBERON:0004457;1.56e-27;9!UBERON:0000042;1.56e-27;9!UBERON:0003688;1.88e-15;6!UBERON:0002358;1.88e-15;6!UBERON:0003684;1.88e-15;6!UBERON:0001178;1.88e-15;6!UBERON:0006915;2.12e-14;3!UBERON:0007616;2.12e-14;3!UBERON:0002217;2.12e-14;3!UBERON:0002018;2.12e-14;3!UBERON:0007846;2.96e-14;3!UBERON:0000043;2.96e-14;3!UBERON:0007845;2.96e-14;3!UBERON:0001136;3.81e-11;1!UBERON:0001343;3.81e-11;1!UBERON:0007195;3.81e-11;1!UBERON:0004910;3.81e-11;1!UBERON:0004813;3.81e-11;1!UBERON:0000310;7.87e-10;10!UBERON:0001443;5.55e-09;11!UBERON:0001013;5.40e-07;14 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:6193;1.01e-11;1!DOID:4235;1.69e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:6193,1.06e-11,1;DOID:4235,1.78e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0000043!4.85e-10!3;UBERON:0000310!2.28e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.56e-27;9!UBERON:0000042;1.56e-27;9!UBERON:0003688;1.88e-15;6!UBERON:0002358;1.88e-15;6!UBERON:0003684;1.88e-15;6!UBERON:0001178;1.88e-15;6!UBERON:0006915;2.12e-14;3!UBERON:0007616;2.12e-14;3!UBERON:0002217;2.12e-14;3!UBERON:0002018;2.12e-14;3!UBERON:0007846;2.96e-14;3!UBERON:0000043;2.96e-14;3!UBERON:0007845;2.96e-14;3!UBERON:0001136;3.81e-11;1!UBERON:0001343;3.81e-11;1!UBERON:0007195;3.81e-11;1!UBERON:0004910;3.81e-11;1!UBERON:0004813;3.81e-11;1!UBERON:0000310;7.87e-10;10!UBERON:0001443;5.55e-09;11!UBERON:0001013;5.40e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004457,1.61e-20,12;UBERON:0000042,1.61e-20,12;UBERON:0003688,2.87e-15,6;UBERON:0002358,2.87e-15,6;UBERON:0003684,2.87e-15,6;UBERON:0001178,2.87e-15,6;UBERON:0006915,1.98e-14,3;UBERON:0007616,1.98e-14,3;UBERON:0002217,1.98e-14,3;UBERON:0002018,1.98e-14,3;UBERON:0007846,2.12e-14,3;UBERON:0000043,2.12e-14,3;UBERON:0007845,2.12e-14,3;UBERON:0001136,3.28e-11,1;UBERON:0001343,3.28e-11,1;UBERON:0004910,3.28e-11,1;UBERON:0005154,3.28e-11,1;UBERON:0005295,3.28e-11,1;UBERON:0004813,3.28e-11,1;UBERON:0005297,3.28e-11,1;UBERON:0005294,3.28e-11,1;UBERON:0010141,3.28e-11,1;UBERON:0005891,3.28e-11,1;UBERON:0007195,5.43e-11,1;UBERON:0000310,7.09e-10,10;UBERON:0001443,5.05e-09,11;UBERON:0001013,5.02e-07,14;UBERON:0004458,7.32e-07,49 | |||
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|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,2.53299878168311,0,0,0,0,0,0,0.866364470720326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0.869079113764942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0.45071417671979,0,0.538168907066586,0.427114777637135,1.48352330811693,0,0,0.257640540045629,0.18611685633159,0.506328996723799,0.779496041289589,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237270619111097,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858840442033979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.71404834855676,4.910783145218,2.52594084989766,1.02511319404561,2.04682899626681,1.12597744800525,0,0,0,0.164254312027618,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165018999841176,0,0,1.6068392984416,0.096670718292122,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43326034125095,1.64647446479951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.64362287673365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0.149254802886874,0.467426619694449,0,0,0.50313580350515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71697852591396,2.02049693259551,0,0.192619830407303,0,0,1.36023555307363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,1.27201740261367,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0.115525666150338,0,0,0,0,0,0,0,0.327543835020193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20905249094162,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23197010900051,1.84870251452567,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0.213454691755431,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:200452556..200452567,- | |short_description=p@chr1:200452556..200452567,- | ||
}} | }} |
Latest revision as of 02:01, 28 July 2015
Short description: | p@chr1:200452556..200452567, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:200452556..200452567, - |
Coexpression cluster: | C1842_Preadipocyte_epithelioid_Synoviocyte_tenocyte_renal_Fibroblast_spindle |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 1.60e-31 | 3 |
omentum preadipocyte | 7.46e-30 | 3 |
preadipocyte | 1.14e-29 | 12 |
synovial cell | 1.98e-14 | 3 |
fibrocyte | 2.12e-14 | 3 |
tendon cell | 2.12e-14 | 3 |
androgen binding protein secreting cell | 3.28e-11 | 1 |
seminiferous tubule epithelial cell | 3.28e-11 | 1 |
Sertoli cell | 3.28e-11 | 1 |
fibroblast | 1.79e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
cavity lining | 1.61e-20 | 12 |
serous membrane | 1.61e-20 | 12 |
omentum | 2.87e-15 | 6 |
peritoneum | 2.87e-15 | 6 |
abdominal cavity | 2.87e-15 | 6 |
visceral peritoneum | 2.87e-15 | 6 |
stratified squamous epithelium | 1.98e-14 | 3 |
layer of synovial tissue | 1.98e-14 | 3 |
synovial joint | 1.98e-14 | 3 |
synovial membrane of synovial joint | 1.98e-14 | 3 |
dense regular connective tissue | 2.12e-14 | 3 |
tendon | 2.12e-14 | 3 |
regular connective tissue | 2.12e-14 | 3 |
mesothelium | 3.28e-11 | 1 |
seminiferous tubule of testis | 3.28e-11 | 1 |
epithelium of male gonad | 3.28e-11 | 1 |
epithelial cord | 3.28e-11 | 1 |
sex cord | 3.28e-11 | 1 |
seminiferous tubule epithelium | 3.28e-11 | 1 |
testis sex cord | 3.28e-11 | 1 |
genital ridge | 3.28e-11 | 1 |
primitive sex cord of indifferent gonad | 3.28e-11 | 1 |
coelomic epithelium | 3.28e-11 | 1 |
stroma of bone marrow | 5.43e-11 | 1 |
breast | 7.09e-10 | 10 |
chest | 5.05e-09 | 11 |
adipose tissue | 5.02e-07 | 14 |
body cavity or lining | 7.32e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
epithelioid sarcoma | 1.06e-11 | 1 |
spindle cell sarcoma | 1.78e-11 | 1 |