FFCP PHASE1:Hg19::chr3:197798851..197798882,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:197798851..197798882,- | |||
|coexpression_cluster_id=C432 | |coexpression_cluster_id=C432 | ||
|description=CAGE_peak_at_chr3:197798851..197798882,- | |description=CAGE_peak_at_chr3:197798851..197798882,- | ||
|id=chr3:197798851..197798882,- | |id=chr3:197798851..197798882,- | ||
|ontology_enrichment_celltype=CL:0000860;4.42e-46;33!CL:0002057;4.42e-46;33!CL:0000473;6.46e-31;39!CL:0000234;6.46e-31;39!CL:0000576;1.12e-21;48!CL:0000766;3.18e-15;69!CL:0001014;1.78e-09;2!CL:0001016;1.78e-09;2!CL:0000738;5.23e-08;136!CL:0002087;2.31e-07;104!CL:0000226;9.91e-07;3!CL:0000842;9.91e-07;3 | |ontology_enrichment_celltype=CL:0002057!2.89e-37!42;CL:0000860!1.91e-34!45;CL:0000766!1.97e-29!76;CL:0000557!2.43e-29!71;CL:0000839!4.06e-27!70;CL:0002009!5.90e-27!65;CL:0002194!3.22e-25!63;CL:0000576!3.22e-25!63;CL:0000040!3.22e-25!63;CL:0000559!3.22e-25!63;CL:0000738!4.08e-24!140;CL:0002031!1.33e-20!124;CL:0000763!6.86e-20!112;CL:0000049!6.86e-20!112;CL:0000988!1.37e-19!182;CL:0000037!2.87e-18!172;CL:0000566!2.87e-18!172;CL:0002087!2.94e-18!119;CL:0002032!1.91e-16!165;CL:0000837!1.91e-16!165;CL:0002393!7.39e-08!9;CL:0002397!7.39e-08!9;CL:0000080!7.01e-07!6 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;4.42e-46;33!CL:0002057;4.42e-46;33!CL:0000473;6.46e-31;39!CL:0000234;6.46e-31;39!CL:0000576;1.12e-21;48!CL:0000766;3.18e-15;69!CL:0001014;1.78e-09;2!CL:0001016;1.78e-09;2!CL:0000738;5.23e-08;136!CL:0002087;2.31e-07;104!CL:0000226;9.91e-07;3!CL:0000842;9.91e-07;3 | ||
| | |ontology_enrichment_celltype_v019_2=CL:0000860,1.32e-38,42;CL:0002057,1.32e-38,42;CL:0000473,1.04e-33,48;CL:0000234,1.04e-33,48;CL:0002009,1.99e-31,61;CL:0000557,1.35e-28,67;CL:0002194,7.59e-27,59;CL:0000576,7.59e-27,59;CL:0000040,7.59e-27,59;CL:0000559,7.59e-27,59;CL:0000839,5.66e-24,66;CL:0000766,6.00e-22,72;CL:0000763,1.47e-17,108;CL:0000049,1.47e-17,108;CL:0000738,1.60e-16,136;CL:0002087,1.95e-16,115;CL:0002031,9.79e-16,120;CL:0000037,3.15e-13,168;CL:0000988,1.64e-12,177;CL:0002032,1.57e-11,161;CL:0000837,1.57e-11,161;CL:0001014,1.71e-09,2;CL:0001016,1.71e-09,2 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019=CL:0002057;7.92e-33;42!CL:0000049;1.03e-08;108 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.75e-26!102;UBERON:0003061!1.75e-26!102;UBERON:0002371!2.03e-25!80;UBERON:0002193!1.53e-23!112;UBERON:0001474!2.94e-23!86;UBERON:0004765!5.68e-19!101;UBERON:0001434!5.68e-19!101;UBERON:0002405!1.68e-17!115;UBERON:0003081!5.71e-11!216;UBERON:0002204!2.75e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.59e-25,76;UBERON:0001474,2.67e-23,82;UBERON:0002390,3.59e-23,98;UBERON:0003061,3.59e-23,98;UBERON:0004765,3.47e-21,90;UBERON:0002193,5.64e-21,108;UBERON:0002405,1.74e-20,93;UBERON:0001434,5.18e-19,100;UBERON:0002204,4.37e-11,167;UBERON:0003081,8.49e-11,203 | |||
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| ||
|short_description=p@chr3:197798851..197798882,- | |short_description=p@chr3:197798851..197798882,- | ||
}} | }} |
Latest revision as of 20:01, 29 July 2015
Short description: | p@chr3:197798851..197798882, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:197798851..197798882, - |
Coexpression cluster: | C432_CD14_choriocarcinoma_Peripheral_CD34_Mast_Fibroblast_granulocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.32e-38 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.32e-38 | 42 |
defensive cell | 1.04e-33 | 48 |
phagocyte | 1.04e-33 | 48 |
macrophage dendritic cell progenitor | 1.99e-31 | 61 |
granulocyte monocyte progenitor cell | 1.35e-28 | 67 |
monopoietic cell | 7.59e-27 | 59 |
monocyte | 7.59e-27 | 59 |
monoblast | 7.59e-27 | 59 |
promonocyte | 7.59e-27 | 59 |
myeloid lineage restricted progenitor cell | 5.66e-24 | 66 |
myeloid leukocyte | 6.00e-22 | 72 |
myeloid cell | 1.47e-17 | 108 |
common myeloid progenitor | 1.47e-17 | 108 |
leukocyte | 1.60e-16 | 136 |
nongranular leukocyte | 1.95e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 9.79e-16 | 120 |
hematopoietic stem cell | 3.15e-13 | 168 |
hematopoietic cell | 1.64e-12 | 177 |
hematopoietic oligopotent progenitor cell | 1.57e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.57e-11 | 161 |
CD1a-positive Langerhans cell | 1.71e-09 | 2 |
immature CD1a-positive Langerhans cell | 1.71e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.59e-25 | 76 |
bone element | 2.67e-23 | 82 |
hematopoietic system | 3.59e-23 | 98 |
blood island | 3.59e-23 | 98 |
skeletal element | 3.47e-21 | 90 |
hemolymphoid system | 5.64e-21 | 108 |
immune system | 1.74e-20 | 93 |
skeletal system | 5.18e-19 | 100 |
musculoskeletal system | 4.37e-11 | 167 |
lateral plate mesoderm | 8.49e-11 | 203 |