FFCP PHASE1:Hg19::chr5:110560211..110560222,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=814 | |EntrezGene=814 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1464 | |HGNC=1464 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=49bp_to_ENST00000504090_5end | |association_with_transcript=49bp_to_ENST00000504090_5end | ||
|cluster_id=chr5:110560211..110560222,+ | |||
|coexpression_cluster_id=C1473 | |coexpression_cluster_id=C1473 | ||
|description=CAGE_peak_6_at_CAMK4_5end | |description=CAGE_peak_6_at_CAMK4_5end | ||
|id=chr5:110560211..110560222,+ | |id=chr5:110560211..110560222,+ | ||
|ontology_enrichment_celltype=CL:0000084;1.01e-46;25!CL:0000791;1.38e-44;18!CL:0000789;1.38e-44;18!CL:0002419;1.38e-44;18!CL:0000625;2.97e-30;11!CL:0000624;8.05e-19;6!CL:0000542;1.30e-13;53!CL:0000898;1.67e-10;3!CL:0000226;1.68e-09;3!CL:0000842;1.68e-09;3!CL:0000623;3.31e-09;3!CL:0000815;1.27e-07;2!CL:0000792;1.27e-07;2!CL:0002677;1.27e-07;2!CL:0002087;5.22e-07;104 | |ontology_enrichment_celltype=CL:0000542!1.17e-23!53;CL:0000051!1.17e-23!53;CL:0000838!5.28e-23!52;CL:0000084!7.73e-23!25;CL:0000827!7.73e-23!25;CL:0000738!4.86e-21!140;CL:0000791!5.90e-21!18;CL:0000789!5.90e-21!18;CL:0002420!5.90e-21!18;CL:0002419!5.90e-21!18;CL:0000790!5.90e-21!18;CL:0002087!1.80e-19!119;CL:0002031!4.36e-15!124;CL:0000625!1.44e-13!11;CL:0000037!4.04e-13!172;CL:0000566!4.04e-13!172;CL:0000988!7.59e-13!182;CL:0002032!1.43e-11!165;CL:0000837!1.43e-11!165;CL:0000624!9.85e-09!6 | ||
| | |ontology_enrichment_celltype_v019=CL:0000084;1.01e-46;25!CL:0000791;1.38e-44;18!CL:0000789;1.38e-44;18!CL:0002419;1.38e-44;18!CL:0000625;2.97e-30;11!CL:0000624;8.05e-19;6!CL:0000542;1.30e-13;53!CL:0000898;1.67e-10;3!CL:0000226;1.68e-09;3!CL:0000842;1.68e-09;3!CL:0000623;3.31e-09;3!CL:0000815;1.27e-07;2!CL:0000792;1.27e-07;2!CL:0002677;1.27e-07;2!CL:0002087;5.22e-07;104 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,3.92e-47,25;CL:0000827,3.92e-47,25;CL:0000791,8.12e-45,18;CL:0000789,8.12e-45,18;CL:0002420,8.12e-45,18;CL:0002419,8.12e-45,18;CL:0000790,8.12e-45,18;CL:0000625,1.70e-30,11;CL:0000838,2.47e-26,52;CL:0000542,1.03e-25,53;CL:0000051,1.03e-25,53;CL:0000624,8.09e-19,6;CL:0000738,6.48e-18,136;CL:0002087,4.53e-17,115;CL:0000037,8.49e-13,168;CL:0002031,2.09e-12,120;CL:0000988,1.06e-11,177;CL:0000898,1.65e-10,3;CL:0002032,7.14e-10,161;CL:0000837,7.14e-10,161;CL:0000226,1.28e-09,3;CL:0000842,1.28e-09,3;CL:0000623,3.05e-09,3;CL:0000825,3.05e-09,3;CL:0000815,1.25e-07,2;CL:0000792,1.25e-07,2;CL:0002677,1.25e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.38e-44;18!CL:0000051;1.30e-13;53!UBERON:0006215;9.73e-11;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000178;3.15e-08;15!UBERON:0000179;3.15e-08;15!UBERON:0000463;3.15e-08;15!UBERON:0002370;3.24e-07;2!UBERON:0005058;3.24e-07;2!UBERON:0009113;3.24e-07;2 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.60e-13!115;UBERON:0000178!2.10e-10!15;UBERON:0000179!2.10e-10!15;UBERON:0000463!2.10e-10!15;UBERON:0004177!1.86e-07!7;UBERON:0002390!4.50e-07!102;UBERON:0003061!4.50e-07!102;UBERON:0002193!5.30e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.15e-08;15!UBERON:0000179;3.15e-08;15!UBERON:0000463;3.15e-08;15!UBERON:0002370;3.24e-07;2!UBERON:0005058;3.24e-07;2!UBERON:0009113;3.24e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.94e-08,15;UBERON:0000179,2.94e-08,15;UBERON:0000463,2.94e-08,15;UBERON:0002370,1.13e-07,4;UBERON:0005058,1.13e-07,4;UBERON:0009113,1.13e-07,4;UBERON:0003295,1.13e-07,4;UBERON:0005562,1.13e-07,4 | |||
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| ||
|short_description=p6@CAMK4 | |short_description=p6@CAMK4 | ||
}} | }} |
Latest revision as of 17:13, 19 September 2015
Short description: | p6@CAMK4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CAMK4_5end |
Coexpression cluster: | C1473_CD4_cerebellum_thymus_neuroblastoma_CD8_Peripheral_caudate |
Association with transcript: | 49bp_to_ENST00000504090_5end |
EntrezGene: | CAMK4 |
HGNC: | 1464 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 3.92e-47 | 25 |
pro-T cell | 3.92e-47 | 25 |
mature alpha-beta T cell | 8.12e-45 | 18 |
alpha-beta T cell | 8.12e-45 | 18 |
immature T cell | 8.12e-45 | 18 |
mature T cell | 8.12e-45 | 18 |
immature alpha-beta T cell | 8.12e-45 | 18 |
CD8-positive, alpha-beta T cell | 1.70e-30 | 11 |
lymphoid lineage restricted progenitor cell | 2.47e-26 | 52 |
lymphocyte | 1.03e-25 | 53 |
common lymphoid progenitor | 1.03e-25 | 53 |
CD4-positive, alpha-beta T cell | 8.09e-19 | 6 |
leukocyte | 6.48e-18 | 136 |
nongranular leukocyte | 4.53e-17 | 115 |
hematopoietic stem cell | 8.49e-13 | 168 |
hematopoietic lineage restricted progenitor cell | 2.09e-12 | 120 |
hematopoietic cell | 1.06e-11 | 177 |
naive T cell | 1.65e-10 | 3 |
hematopoietic oligopotent progenitor cell | 7.14e-10 | 161 |
hematopoietic multipotent progenitor cell | 7.14e-10 | 161 |
single nucleate cell | 1.28e-09 | 3 |
mononuclear cell | 1.28e-09 | 3 |
natural killer cell | 3.05e-09 | 3 |
pro-NK cell | 3.05e-09 | 3 |
regulatory T cell | 1.25e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.25e-07 | 2 |
naive regulatory T cell | 1.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 2.94e-08 | 15 |
haemolymphatic fluid | 2.94e-08 | 15 |
organism substance | 2.94e-08 | 15 |
thymus | 1.13e-07 | 4 |
hemolymphoid system gland | 1.13e-07 | 4 |
thymic region | 1.13e-07 | 4 |
pharyngeal gland | 1.13e-07 | 4 |
thymus primordium | 1.13e-07 | 4 |