FFCP PHASE1:Hg19::chr1:145116327..145116343,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:145116327..145116343,+
|short_description=p@chr1:145116327..145116343,+
|description=CAGE_peak_at_chr1:145116327..145116343,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:145116327..145116343,+ | |||
|coexpression_cluster_id=C3859 | |||
|description=CAGE_peak_at_chr1:145116327..145116343,+ | |||
|id=chr1:145116327..145116343,+ | |||
|ontology_enrichment_celltype=CL:0000048!5.73e-29!430;CL:0000723!3.07e-27!436;CL:0000034!2.90e-24!444;CL:0000055!1.37e-17!180;CL:0000144!1.90e-16!625;CL:0002320!8.11e-16!365;CL:0002371!2.57e-15!591;CL:0000680!5.04e-15!57;CL:0000056!5.04e-15!57;CL:0000355!5.04e-15!57;CL:0000134!1.88e-14!358;CL:0000548!8.70e-14!679;CL:0000004!8.70e-14!679;CL:0000255!8.70e-14!679;CL:0000187!1.01e-13!54;CL:0000012!4.12e-13!682;CL:0000003!1.39e-12!722;CL:0000393!3.08e-12!60;CL:0000211!3.08e-12!60;CL:0000183!1.64e-11!59;CL:0000219!2.42e-11!390;CL:0000192!5.72e-11!42;CL:0000514!5.72e-11!42;CL:0002194!4.47e-10!63;CL:0000576!4.47e-10!63;CL:0000040!4.47e-10!63;CL:0000559!4.47e-10!63;CL:0000057!1.06e-09!75;CL:0000359!2.17e-09!32;CL:0002009!6.17e-09!65;CL:0000839!9.17e-09!70;CL:0000222!2.33e-08!119;CL:0000860!1.44e-07!45;CL:0002057!3.06e-07!42;CL:0000557!6.31e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.63e-10;39!CL:0000234;2.63e-10;39!CL:0000860;7.08e-10;33!CL:0002057;7.08e-10;33!CL:0000134;4.81e-09;55!CL:0000359;6.29e-09;32!CL:0000723;7.51e-08;61!CL:0000048;1.39e-07;58!CL:0000187;1.84e-07;55!CL:0000192;2.44e-07;43!CL:0000393;9.04e-07;61!CL:0000211;9.04e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,5.86e-28,427;CL:0000723,2.94e-26,433;CL:0000034,2.46e-23,441;CL:0002320,2.12e-15,361;CL:0000680,2.93e-14,58;CL:0000056,2.93e-14,58;CL:0000355,2.93e-14,58;CL:0000134,4.67e-14,354;CL:0000187,5.53e-13,55;CL:0000393,1.34e-11,61;CL:0000211,1.34e-11,61;CL:0000219,5.55e-11,386;CL:0000192,3.09e-10,43;CL:0000514,3.09e-10,43;CL:0002194,9.24e-10,59;CL:0000576,9.24e-10,59;CL:0000040,9.24e-10,59;CL:0000559,9.24e-10,59;CL:0000057,1.08e-09,76;CL:0000473,1.73e-09,48;CL:0000234,1.73e-09,48;CL:0000359,2.17e-09,32;CL:0002009,1.32e-08,61;CL:0000839,2.00e-08,66;CL:0000222,5.67e-08,121;CL:0000860,3.06e-07,42;CL:0002057,3.06e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000355;1.60e-07;58!CL:0000514;2.44e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!4.60e-21!167;UBERON:0002384!2.18e-14!375;UBERON:0000914!8.62e-14!83;UBERON:0002329!8.62e-14!83;UBERON:0003077!8.62e-14!83;UBERON:0003059!8.62e-14!83;UBERON:0007282!8.62e-14!83;UBERON:0009618!8.62e-14!83;UBERON:0007285!8.62e-14!83;UBERON:0004290!3.67e-13!70;UBERON:0001134!6.06e-13!61;UBERON:0002036!6.06e-13!61;UBERON:0003082!6.06e-13!61;UBERON:0002385!2.99e-12!63;UBERON:0001015!2.99e-12!63;UBERON:0000383!2.99e-12!63;UBERON:0000486!1.35e-10!82;UBERON:0000926!5.99e-09!448;UBERON:0004120!5.99e-09!448;UBERON:0006603!5.99e-09!448;UBERON:0004765!2.08e-08!101;UBERON:0001434!2.08e-08!101;UBERON:0002371!3.94e-08!80;UBERON:0001474!1.37e-07!86;UBERON:0005256!2.91e-07!143 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.09e-21,167;UBERON:0000926,3.19e-14,315;UBERON:0004120,3.19e-14,315;UBERON:0006603,3.19e-14,315;UBERON:0002384,5.50e-14,371;UBERON:0007524,1.05e-12,73;UBERON:0002329,1.51e-12,71;UBERON:0003059,1.51e-12,71;UBERON:0007282,1.51e-12,71;UBERON:0004290,1.51e-12,71;UBERON:0009618,1.51e-12,71;UBERON:0003077,2.70e-12,72;UBERON:0007285,2.70e-12,72;UBERON:0001134,2.77e-12,62;UBERON:0002036,2.77e-12,62;UBERON:0003082,2.77e-12,62;UBERON:0002385,1.25e-11,64;UBERON:0001015,1.25e-11,64;UBERON:0000383,1.25e-11,64;UBERON:0000486,4.08e-10,83;UBERON:0007503,2.40e-09,78;UBERON:0001434,4.80e-09,100;UBERON:0004765,9.98e-09,90;UBERON:0002371,8.74e-08,76;UBERON:0005256,2.89e-07,122;UBERON:0001474,3.03e-07,82;UBERON:0003081,6.60e-07,203 | |||
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| ||
|short_description=p@chr1:145116327..145116343,+ | |||
}} | }} |
Latest revision as of 20:45, 27 July 2015
Short description: | p@chr1:145116327..145116343, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:145116327..145116343, + |
Coexpression cluster: | C3859_CD14_Fibroblast_Preadipocyte_Smooth_leiomyoma_tenocyte_Myoblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 5.86e-28 | 427 |
somatic stem cell | 2.94e-26 | 433 |
stem cell | 2.46e-23 | 441 |
connective tissue cell | 2.12e-15 | 361 |
muscle precursor cell | 2.93e-14 | 58 |
myoblast | 2.93e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.93e-14 | 58 |
mesenchymal cell | 4.67e-14 | 354 |
muscle cell | 5.53e-13 | 55 |
electrically responsive cell | 1.34e-11 | 61 |
electrically active cell | 1.34e-11 | 61 |
motile cell | 5.55e-11 | 386 |
smooth muscle cell | 3.09e-10 | 43 |
smooth muscle myoblast | 3.09e-10 | 43 |
monopoietic cell | 9.24e-10 | 59 |
monocyte | 9.24e-10 | 59 |
monoblast | 9.24e-10 | 59 |
promonocyte | 9.24e-10 | 59 |
fibroblast | 1.08e-09 | 76 |
defensive cell | 1.73e-09 | 48 |
phagocyte | 1.73e-09 | 48 |
vascular associated smooth muscle cell | 2.17e-09 | 32 |
macrophage dendritic cell progenitor | 1.32e-08 | 61 |
myeloid lineage restricted progenitor cell | 2.00e-08 | 66 |
mesodermal cell | 5.67e-08 | 121 |
classical monocyte | 3.06e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.06e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.09e-21 | 167 |
mesoderm | 3.19e-14 | 315 |
mesoderm-derived structure | 3.19e-14 | 315 |
presumptive mesoderm | 3.19e-14 | 315 |
connective tissue | 5.50e-14 | 371 |
dense mesenchyme tissue | 1.05e-12 | 73 |
somite | 1.51e-12 | 71 |
presomitic mesoderm | 1.51e-12 | 71 |
presumptive segmental plate | 1.51e-12 | 71 |
dermomyotome | 1.51e-12 | 71 |
trunk paraxial mesoderm | 1.51e-12 | 71 |
paraxial mesoderm | 2.70e-12 | 72 |
presumptive paraxial mesoderm | 2.70e-12 | 72 |
skeletal muscle tissue | 2.77e-12 | 62 |
striated muscle tissue | 2.77e-12 | 62 |
myotome | 2.77e-12 | 62 |
muscle tissue | 1.25e-11 | 64 |
musculature | 1.25e-11 | 64 |
musculature of body | 1.25e-11 | 64 |
multilaminar epithelium | 4.08e-10 | 83 |
epithelial vesicle | 2.40e-09 | 78 |
skeletal system | 4.80e-09 | 100 |
skeletal element | 9.98e-09 | 90 |
bone marrow | 8.74e-08 | 76 |
trunk mesenchyme | 2.89e-07 | 122 |
bone element | 3.03e-07 | 82 |
lateral plate mesoderm | 6.60e-07 | 203 |