FFCP PHASE1:Hg19::chr1:11865532..11865537,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:11865532..11865537,-
|short_description=p11@MTHFR
|description=CAGE_peak_11_at_MTHFR_5end
|association_with_transcript=-62bp_to_ENST00000376585,ENST0000042...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4524 | |EntrezGene=4524 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7436 | |HGNC=7436 | ||
|TSSclassifier=strong | |||
|UniProt=P42898,Q5SNW7,Q8IU67 | |UniProt=P42898,Q5SNW7,Q8IU67 | ||
|association_with_transcript=-62bp_to_ENST00000376585,ENST00000423400,ENST00000431243,uc001atd.1,uc009vnd.1_5end | |||
|cluster_id=chr1:11865532..11865537,- | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_11_at_MTHFR_5end | |||
|id=chr1:11865532..11865537,- | |||
|ontology_enrichment_celltype=CL:0000860!7.96e-15!45;CL:0002057!1.09e-13!42;CL:0000738!1.19e-12!140;CL:0000766!2.43e-12!76;CL:0002031!9.91e-10!124;CL:0000557!1.10e-09!71;CL:0002009!3.00e-09!65;CL:0002032!1.28e-08!165;CL:0000837!1.28e-08!165;CL:0002087!1.31e-08!119;CL:0000037!2.58e-08!172;CL:0000566!2.58e-08!172;CL:0000839!3.21e-08!70;CL:0002194!4.73e-08!63;CL:0000576!4.73e-08!63;CL:0000040!4.73e-08!63;CL:0000559!4.73e-08!63;CL:0000763!1.28e-07!112;CL:0000049!1.28e-07!112;CL:0000223!2.63e-07!59;CL:0000988!7.23e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.77e-21;33!CL:0002057;1.77e-21;33!CL:0000473;1.88e-17;39!CL:0000234;1.88e-17;39!CL:0000576;1.63e-13;48!CL:0000623;3.20e-12;3!CL:0000766;3.19e-11;69!CL:0001014;9.29e-10;2!CL:0001016;9.29e-10;2!CL:0000771;2.21e-09;2!CL:0000094;2.85e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.31e-23,42;CL:0002057,3.31e-23,42;CL:0000766,4.12e-23,72;CL:0000473,2.10e-22,48;CL:0000234,2.10e-22,48;CL:0002009,6.90e-21,61;CL:0000557,1.06e-20,67;CL:0000738,2.52e-17,136;CL:0002194,4.84e-17,59;CL:0000576,4.84e-17,59;CL:0000040,4.84e-17,59;CL:0000559,4.84e-17,59;CL:0000763,9.19e-17,108;CL:0000049,9.19e-17,108;CL:0000839,1.12e-16,66;CL:0002031,2.72e-14,120;CL:0002032,1.42e-13,161;CL:0000837,1.42e-13,161;CL:0000037,9.96e-13,168;CL:0000623,2.98e-12,3;CL:0000825,2.98e-12,3;CL:0000988,9.70e-12,177;CL:0002087,5.01e-11,115;CL:0001014,9.33e-10,2;CL:0001016,9.33e-10,2;CL:0000771,1.74e-09,2;CL:0000094,2.43e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.72e-16;42 | |||
|ontology_enrichment_disease=DOID:305!4.78e-13!106;DOID:299!3.08e-08!25 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.98e-08!80;UBERON:0002405!8.65e-08!115;UBERON:0001474!1.85e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.13e-17,76;UBERON:0001474,5.06e-16,82;UBERON:0004765,3.65e-14,90;UBERON:0002405,1.50e-13,93;UBERON:0002390,1.30e-12,98;UBERON:0003061,1.30e-12,98;UBERON:0001434,2.91e-12,100;UBERON:0002193,5.34e-11,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,1.18009283054671,0,0.77408061658038,0.919421224478927,0.90361775633475,0.739508020333575,0,0,0,0.553995408531877,1.60435557976113,1.51907609501096,0,0,0,0.290796477559129,0.377875943688809,2.18325655069035,0.464858073811369,1.23350366406548,2.78735733805593,0.575384784644301,0,3.07426898855161,2.06847408441971,2.5819387343353,4.06279459783025,0.564727018627814,1.36453075028923,1.34834090667051,0.306083892370903,0.641858054152187,1.27867425159808,0.659702600373432,0,0,0,0.56738522469114,1.24564449799115,3.01498398308092,1.5644487552606,3.04064382587163,0,0.368277635987565,1.26584954976354,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,1.17447437874188,0.764546456250458,0,1.12101712596307,0,0.590129310341499,0.393010762749165,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.604820229674197,0.802320587350522,0.724122019413995,0,0,0,0,0,0,0,0.973269740605272,0,0,0.175669571386252,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.966304265816484,0,0.573609190778008,0.121973706129595,0,0,0.310983165046111,0,0,0,0,0,0,0,0.354920400119532,0,0,0,0,0,0.269662616320329,0,0,0,0,0,0,1.26755034821831,0,0,0,0.245976877086227,0,0.548751427043128,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,1.71697232418975,0,0,0,0,0,0,0.179117045405697,0,1.53353071666084,0,0,1.4512968087854,0.144119953416961,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0.112085143993527,1.18218456121156,1.50939302401662,2.18183161675572,0,0,0,0,0,0.749007023947182,2.99161459204025,0.414415513436035,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.184161977871793,0,0,0,0.902399225814824,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0.328014645699706,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0,0,0,0.145016693914229,0,0,0,0,0.255225424989168,0.2023155617111,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,2.01090682660736,1.08890984861323,0.0941438007767792,0.86101074534246,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,1.43246690842614,0,0,0,0,0.111308705022906,0,0,0.597743964753209,0,0,0.102268682502155,0.123084805461069,0,0.359473404589307,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,1.13697999995054,0,0.227586896570999,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.153900517007594,0,0,0,0,2.55200927785536,0.0915975934018623,1.06606955203727,0,0,0,0.225595660617181,0.19606253431774,0.167821586975843,0,0,0.843992258112108,0.326465616318295,0.565412285735763,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0.391329237864179,0,0,0,0,0.126373159256976,0.450970258243478,0,0,0,0,0,0.853828638089378,0,0.347119476670262,0.979923974143776,0.522355239482415,0.34945333648406,0.171986032471617,0.0967563312890851,0.365446585430928,0.164230914106418,2.13375836274523,0.0882561266915003,0,0,0,0,0.586654148204409,0.160317640503067,0.213452994739353,0.19980960958213,0.144090417154106,0.114536596165916,0,0.288109595976299,0,0.471388069233591,0,0,0,0,0,0,0,0,0.262887354279314,0.558564802544508,0,5.0251111720377,0.998395002494955,2.14613024068285,0.446342914883745,0.335917362433631,0,1.16495949527454,0.157566364614447,0.164831716762333,0.13480708770837,0,0,0,0,0.160753148465019,0.550157746388935,0,18.6728329987745,32.4996820914339,0,0,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0,3.31045985182716,0.76280561296425,0,0,0,0,0.246277562248017,0,0,0.58620893471233,1.32506888912221,0,0.13223260174269,0,0.704815022316672,0.320362237703084,0,0,0,0.592834895693833,0.121792598380896,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.124192805882767,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,0,0.228840068396924,0.302461847526478,0,0,0,0,0.310525913752519,0,0,0.521745061811734,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578742114812744,0,0,0,0.303859956177382,0,0,0.398594520940089,0,0,0,0.845248493434508,0.39997479170986,0,0.344429959321631,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0.392590874004102,0.235939446695481,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0.261906694481422,0.327543835020193,1.03499260351932,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,1.59363533945908,0.0887023701626388,0,0.685952037749674,0,0,0.354581522651905,0,0.156986185701028,0,2.80272163313789,0,0.647782773655864,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0.31020638566432,0,0.894843454382338,0,0.121917924982269,0,0.102662806856247,0,0,0.233939463462106,0,0,0,0,0.150962843566674,0.0771741581079447,0,0.470317296361523,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0.352894871715692,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0.26721740526556,2.48116228744081,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0.435433495793923,0,0.26940821205835,0.0717222053926763,0,0.325613074443898,0.640364075266293,0,0.179650404213174,2.34640942403454,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0.0787107813136792,1.18009283054671,0,0.77408061658038,0.919421224478927,0.90361775633475,0.739508020333575,0,0,0,0.553995408531877,1.60435557976113,1.51907609501096,0,0,0,0.290796477559129,0.377875943688809,2.18325655069035,0.464858073811369,1.23350366406548,2.78735733805593,0.575384784644301,0,3.07426898855161,2.06847408441971,2.5819387343353,4.06279459783025,0.564727018627814,1.36453075028923,1.34834090667051,0.306083892370903,0.641858054152187,1.27867425159808,0.659702600373432,0,0,0,0.56738522469114,1.24564449799115,3.01498398308092,1.5644487552606,3.04064382587163,0,0.368277635987565,1.26584954976354,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,1.17447437874188,0.764546456250458,0,1.12101712596307,0,0.590129310341499,0.393010762749165,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.604820229674197,0.802320587350522,0.724122019413995,0,0,0,0,0,0,0,0.973269740605272,0,0,0.175669571386252,0.196468613246569,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.966304265816484,0,0.573609190778008,0.121973706129595,0,0,0.310983165046111,0,0,0,0,0,0,0,0.354920400119532,0,0,0,0,0,0.269662616320329,0,0,0,0,0,0,1.26755034821831,0,0,0,0.245976877086227,0,0.548751427043128,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,1.71697232418975,0,0,0,0,0,0,0.179117045405697,0,1.53353071666084,0,0,1.4512968087854,0.144119953416961,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10833939483032,0,0,0,0,0,0,0.112085143993527,1.18218456121156,1.50939302401662,2.18183161675572,0,0,0,0,0,0.749007023947182,2.99161459204025,0.414415513436035,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0.303127571446259,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.184161977871793,0,0,0,0.902399225814824,0.0770153371044148,0.784349769176855,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0.328014645699706,0,0.412164046590889,0,0,0,0,0,0.096670718292122,0,0,0,0,0.145016693914229,0,0,0,0,0.255225424989168,0.2023155617111,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,2.01090682660736,1.08890984861323,0.0941438007767792,0.86101074534246,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0.534120355637366,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,1.43246690842614,0,0,0,0,0.111308705022906,0,0,0.597743964753209,0,0,0.102268682502155,0.123084805461069,0,0.359473404589307,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,1.13697999995054,0,0.227586896570999,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.153900517007594,0,0,0,0,2.55200927785536,0.0915975934018623,1.06606955203727,0,0,0,0.225595660617181,0.19606253431774,0.167821586975843,0,0,0.843992258112108,0.326465616318295,0.565412285735763,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0.391329237864179,0,0,0,0,0.126373159256976,0.450970258243478,0,0,0,0,0,0.853828638089378,0,0.347119476670262,0.979923974143776,0.522355239482415,0.34945333648406,0.171986032471617,0.0967563312890851,0.365446585430928,0.164230914106418,2.13375836274523,0.0882561266915003,0,0,0,0,0.586654148204409,0.160317640503067,0.213452994739353,0.19980960958213,0.144090417154106,0.114536596165916,0,0.288109595976299,0,0.471388069233591,0,0,0,0,0,0,0,0,0.262887354279314,0.558564802544508,0,5.0251111720377,0.998395002494955,2.14613024068285,0.446342914883745,0.335917362433631,0,1.16495949527454,0.157566364614447,0.164831716762333,0.13480708770837,0,0,0,0,0.160753148465019,0.550157746388935,0,18.6728329987745,32.4996820914339,0,0,0.0788057072991982,0.0524545881349981,0,0,0.191915197319445,0,3.31045985182716,0.76280561296425,0,0,0,0,0.246277562248017,0,0,0.58620893471233,1.32506888912221,0,0.13223260174269,0,0.704815022316672,0.320362237703084,0,0,0,0.592834895693833,0.121792598380896,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.124192805882767,0,0.124980407962107,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,0,0.228840068396924,0.302461847526478,0,0,0,0,0.310525913752519,0,0,0.521745061811734,0,0,0,0.181848659202559,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578742114812744,0,0,0,0.303859956177382,0,0,0.398594520940089,0,0,0,0.845248493434508,0.39997479170986,0,0.344429959321631,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0.392590874004102,0.235939446695481,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0.261906694481422,0.327543835020193,1.03499260351932,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,1.59363533945908,0.0887023701626388,0,0.685952037749674,0,0,0.354581522651905,0,0.156986185701028,0,2.80272163313789,0,0.647782773655864,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0.31020638566432,0,0.894843454382338,0,0.121917924982269,0,0.102662806856247,0,0,0.233939463462106,0,0,0,0,0.150962843566674,0.0771741581079447,0,0.470317296361523,0.245148321753905,0,0,0,0,0,0,0.0644578879735772,0,0,0.352894871715692,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0.26721740526556,2.48116228744081,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0.435433495793923,0,0.26940821205835,0.0717222053926763,0,0.325613074443898,0.640364075266293,0,0.179650404213174,2.34640942403454,0.122241444182866,0,0,0,0 | ||
|short_description=p11@MTHFR | |||
}} | }} |
Latest revision as of 10:57, 16 September 2015
Short description: | p11@MTHFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_MTHFR_5end |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | -62bp_to_ENST00000376585, ENST00000423400, ENST00000431243, uc001atd.1, uc009vnd.1_5end |
EntrezGene: | MTHFR |
HGNC: | 7436 |
UniProt: | P42898Q5SNW7Q8IU67 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.31e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.31e-23 | 42 |
myeloid leukocyte | 4.12e-23 | 72 |
defensive cell | 2.10e-22 | 48 |
phagocyte | 2.10e-22 | 48 |
macrophage dendritic cell progenitor | 6.90e-21 | 61 |
granulocyte monocyte progenitor cell | 1.06e-20 | 67 |
leukocyte | 2.52e-17 | 136 |
monopoietic cell | 4.84e-17 | 59 |
monocyte | 4.84e-17 | 59 |
monoblast | 4.84e-17 | 59 |
promonocyte | 4.84e-17 | 59 |
myeloid cell | 9.19e-17 | 108 |
common myeloid progenitor | 9.19e-17 | 108 |
myeloid lineage restricted progenitor cell | 1.12e-16 | 66 |
hematopoietic lineage restricted progenitor cell | 2.72e-14 | 120 |
hematopoietic oligopotent progenitor cell | 1.42e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.42e-13 | 161 |
hematopoietic stem cell | 9.96e-13 | 168 |
natural killer cell | 2.98e-12 | 3 |
pro-NK cell | 2.98e-12 | 3 |
hematopoietic cell | 9.70e-12 | 177 |
nongranular leukocyte | 5.01e-11 | 115 |
CD1a-positive Langerhans cell | 9.33e-10 | 2 |
immature CD1a-positive Langerhans cell | 9.33e-10 | 2 |
eosinophil | 1.74e-09 | 2 |
granulocyte | 2.43e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.13e-17 | 76 |
bone element | 5.06e-16 | 82 |
skeletal element | 3.65e-14 | 90 |
immune system | 1.50e-13 | 93 |
hematopoietic system | 1.30e-12 | 98 |
blood island | 1.30e-12 | 98 |
skeletal system | 2.91e-12 | 100 |
hemolymphoid system | 5.34e-11 | 108 |