FFCP PHASE1:Hg19::chr6:42016288..42016297,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=896 | |EntrezGene=896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1585 | |HGNC=1585 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=116bp_to_ENST00000505672_5end | |association_with_transcript=116bp_to_ENST00000505672_5end | ||
|cluster_id=chr6:42016288..42016297,- | |||
|description=CAGE_peak_12_at_CCND3_5end | |description=CAGE_peak_12_at_CCND3_5end | ||
|id=chr6:42016288..42016297,- | |id=chr6:42016288..42016297,- | ||
|ontology_enrichment_celltype=CL:0000791;3.37e-16;18!CL:0000789;3.37e-16;18!CL:0002419;3.37e-16;18!CL:0000624;4.38e-13;6!CL:0000898;4.44e-12;3!CL:0000084;1.53e-11;25!CL:0000895;1.10e-09;1!CL:0000542;4.11e-08;53!CL:0000625;2.30e-07;11 | |ontology_enrichment_celltype=CL:0000791!7.38e-17!18;CL:0000789!7.38e-17!18;CL:0002420!7.38e-17!18;CL:0002419!7.38e-17!18;CL:0000790!7.38e-17!18;CL:0000084!1.97e-13!25;CL:0000827!1.97e-13!25;CL:0000838!8.15e-13!52;CL:0000542!2.16e-12!53;CL:0000051!2.16e-12!53;CL:0000625!1.62e-11!11;CL:0000624!2.38e-08!6;CL:0000738!4.22e-07!140 | ||
| | |ontology_enrichment_celltype_v019=CL:0000791;3.37e-16;18!CL:0000789;3.37e-16;18!CL:0002419;3.37e-16;18!CL:0000624;4.38e-13;6!CL:0000898;4.44e-12;3!CL:0000084;1.53e-11;25!CL:0000895;1.10e-09;1!CL:0000542;4.11e-08;53!CL:0000625;2.30e-07;11 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.81e-16,18;CL:0000789,1.81e-16,18;CL:0002420,1.81e-16,18;CL:0002419,1.81e-16,18;CL:0000790,1.81e-16,18;CL:0000624,2.12e-13,6;CL:0000898,1.92e-12,3;CL:0000084,9.90e-12,25;CL:0000827,9.90e-12,25;CL:0000810,7.50e-10,1;CL:0000895,7.50e-10,1;CL:0002436,7.50e-10,1;CL:0002427,7.50e-10,1;CL:0002428,7.50e-10,1;CL:0002429,7.50e-10,1;CL:0002433,7.50e-10,1;CL:0002431,7.50e-10,1;CL:0002432,7.50e-10,1;CL:0000838,2.50e-09,52;CL:0000542,3.92e-09,53;CL:0000051,3.92e-09,53;CL:0000625,2.04e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;3.37e-16;18!CL:0002427;1.10e-09;1!CL:0000051;4.11e-08;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0007195;1.10e-09;1!UBERON:0002171;1.10e-09;1!UBERON:0006518;1.10e-09;1!UBERON:0008949;1.10e-09;1!UBERON:0000101;1.10e-09;1!UBERON:0002167;1.10e-09;1 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.29e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;1.10e-09;1!UBERON:0002171;1.10e-09;1!UBERON:0006518;1.10e-09;1!UBERON:0008949;1.10e-09;1!UBERON:0000101;1.10e-09;1!UBERON:0002167;1.10e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,1.62e-09,1;UBERON:0006518,1.62e-09,1;UBERON:0008949,1.62e-09,1;UBERON:0000101,1.62e-09,1;UBERON:0002167,1.62e-09,1;UBERON:0002370,1.69e-09,4;UBERON:0005058,1.69e-09,4;UBERON:0009113,1.69e-09,4;UBERON:0003295,1.69e-09,4;UBERON:0005562,1.69e-09,4;UBERON:0007195,1.91e-09,1 | |||
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| ||
|short_description=p12@CCND3 | |short_description=p12@CCND3 | ||
}} | }} |
Latest revision as of 19:31, 18 September 2015
Short description: | p12@CCND3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_CCND3_5end |
Coexpression cluster: | NA |
Association with transcript: | 116bp_to_ENST00000505672_5end |
EntrezGene: | CCND3 |
HGNC: | 1585 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.81e-16 | 18 |
alpha-beta T cell | 1.81e-16 | 18 |
immature T cell | 1.81e-16 | 18 |
mature T cell | 1.81e-16 | 18 |
immature alpha-beta T cell | 1.81e-16 | 18 |
CD4-positive, alpha-beta T cell | 2.12e-13 | 6 |
naive T cell | 1.92e-12 | 3 |
T cell | 9.90e-12 | 25 |
pro-T cell | 9.90e-12 | 25 |
CD4-positive, alpha-beta thymocyte | 7.50e-10 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 7.50e-10 | 1 |
mature CD4 single-positive thymocyte | 7.50e-10 | 1 |
resting double-positive thymocyte | 7.50e-10 | 1 |
double-positive blast | 7.50e-10 | 1 |
CD69-positive double-positive thymocyte | 7.50e-10 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 7.50e-10 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 7.50e-10 | 1 |
CD24-positive, CD4 single-positive thymocyte | 7.50e-10 | 1 |
lymphoid lineage restricted progenitor cell | 2.50e-09 | 52 |
lymphocyte | 3.92e-09 | 53 |
common lymphoid progenitor | 3.92e-09 | 53 |
CD8-positive, alpha-beta T cell | 2.04e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 1.62e-09 | 1 |
right lung lobe | 1.62e-09 | 1 |
lower lobe of lung | 1.62e-09 | 1 |
lobe of lung | 1.62e-09 | 1 |
right lung | 1.62e-09 | 1 |
thymus | 1.69e-09 | 4 |
hemolymphoid system gland | 1.69e-09 | 4 |
thymic region | 1.69e-09 | 4 |
pharyngeal gland | 1.69e-09 | 4 |
thymus primordium | 1.69e-09 | 4 |
stroma of bone marrow | 1.91e-09 | 1 |