FFCP PHASE1:Hg19::chr12:1920975..1920990,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93589 | |EntrezGene=93589 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20202 | |HGNC=20202 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_ENST00000542340_5end | |association_with_transcript=-11bp_to_ENST00000542340_5end | ||
|cluster_id=chr12:1920975..1920990,- | |||
|description=CAGE_peak_3_at_CACNA2D4_5end | |description=CAGE_peak_3_at_CACNA2D4_5end | ||
|id=chr12:1920975..1920990,- | |id=chr12:1920975..1920990,- | ||
|ontology_enrichment_celltype=CL:0000473;2.61e-37;39!CL:0000234;2.61e-37;39!CL:0000860;4.32e-31;33!CL:0002057;4.32e-31;33!CL:0000235;4.60e-21;6!CL:0000576;2.11e-17;48!CL:0000763;1.33e-14;100!CL:0000766;8.64e-14;69 | |ontology_enrichment_celltype=CL:0000037!6.35e-41!172;CL:0000566!6.35e-41!172;CL:0000763!2.48e-40!112;CL:0000049!2.48e-40!112;CL:0002032!5.52e-38!165;CL:0000837!5.52e-38!165;CL:0000988!6.19e-38!182;CL:0000766!5.03e-37!76;CL:0000839!6.69e-37!70;CL:0002194!2.25e-36!63;CL:0000576!2.25e-36!63;CL:0000040!2.25e-36!63;CL:0000559!2.25e-36!63;CL:0000557!4.13e-36!71;CL:0002009!1.06e-34!65;CL:0000738!5.50e-32!140;CL:0002057!4.19e-31!42;CL:0002031!6.75e-31!124;CL:0002087!9.73e-30!119;CL:0000860!4.15e-28!45;CL:0000134!8.56e-12!358;CL:0002320!5.19e-11!365;CL:0000219!5.49e-10!390 | ||
| | |ontology_enrichment_celltype_v019=CL:0000473;2.61e-37;39!CL:0000234;2.61e-37;39!CL:0000860;4.32e-31;33!CL:0002057;4.32e-31;33!CL:0000235;4.60e-21;6!CL:0000576;2.11e-17;48!CL:0000763;1.33e-14;100!CL:0000766;8.64e-14;69 | ||
|ontology_enrichment_disease=DOID:4929;1.01e-07;2 | |ontology_enrichment_celltype_v019_2=CL:0000473,1.62e-47,48;CL:0000234,1.62e-47,48;CL:0002194,1.32e-36,59;CL:0000576,1.32e-36,59;CL:0000040,1.32e-36,59;CL:0000559,1.32e-36,59;CL:0002009,3.38e-35,61;CL:0000860,2.58e-32,42;CL:0002057,2.58e-32,42;CL:0000839,4.75e-32,66;CL:0000763,5.53e-32,108;CL:0000049,5.53e-32,108;CL:0000557,1.78e-31,67;CL:0000766,7.64e-29,72;CL:0002032,1.50e-21,161;CL:0000837,1.50e-21,161;CL:0000235,5.83e-21,6;CL:0000037,2.76e-20,168;CL:0000988,8.31e-19,177;CL:0002087,1.23e-18,115;CL:0002031,1.44e-17,120;CL:0000738,1.10e-14,136;CL:0000134,1.31e-07,354;CL:0002320,2.75e-07,361 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019=CL:0002057;4.68e-21;42!CL:0000049;1.05e-09;108 | ||
|ontology_enrichment_disease=DOID:8692!7.09e-11!31;DOID:1240!4.13e-10!39;DOID:2531!5.58e-08!51;DOID:0060083!5.58e-08!51 | |||
|ontology_enrichment_disease_v019=DOID:4929;1.01e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,6.17e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0002390!7.75e-34!102;UBERON:0003061!7.75e-34!102;UBERON:0002371!1.08e-32!80;UBERON:0002193!3.85e-31!112;UBERON:0001474!4.71e-29!86;UBERON:0002405!6.79e-27!115;UBERON:0004765!7.44e-23!101;UBERON:0001434!7.44e-23!101;UBERON:0002384!3.14e-11!375;UBERON:0003081!4.63e-10!216;UBERON:0002204!4.02e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.52e-27,76;UBERON:0001474,1.55e-24,82;UBERON:0004765,8.94e-22,90;UBERON:0002390,3.15e-21,98;UBERON:0003061,3.15e-21,98;UBERON:0002405,7.31e-21,93;UBERON:0001434,6.03e-19,100;UBERON:0002193,1.23e-18,108;UBERON:0002204,8.30e-09,167;UBERON:0003081,6.77e-07,203;UBERON:0002384,7.55e-07,371 | |||
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| ||
|short_description=p3@CACNA2D4 | |short_description=p3@CACNA2D4 | ||
}} | }} |
Latest revision as of 17:37, 17 September 2015
Short description: | p3@CACNA2D4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CACNA2D4_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_ENST00000542340_5end |
EntrezGene: | CACNA2D4 |
HGNC: | 20202 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.62e-47 | 48 |
phagocyte | 1.62e-47 | 48 |
monopoietic cell | 1.32e-36 | 59 |
monocyte | 1.32e-36 | 59 |
monoblast | 1.32e-36 | 59 |
promonocyte | 1.32e-36 | 59 |
macrophage dendritic cell progenitor | 3.38e-35 | 61 |
classical monocyte | 2.58e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.58e-32 | 42 |
myeloid lineage restricted progenitor cell | 4.75e-32 | 66 |
myeloid cell | 5.53e-32 | 108 |
common myeloid progenitor | 5.53e-32 | 108 |
granulocyte monocyte progenitor cell | 1.78e-31 | 67 |
myeloid leukocyte | 7.64e-29 | 72 |
hematopoietic oligopotent progenitor cell | 1.50e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.50e-21 | 161 |
macrophage | 5.83e-21 | 6 |
hematopoietic stem cell | 2.76e-20 | 168 |
hematopoietic cell | 8.31e-19 | 177 |
nongranular leukocyte | 1.23e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 1.44e-17 | 120 |
leukocyte | 1.10e-14 | 136 |
mesenchymal cell | 1.31e-07 | 354 |
connective tissue cell | 2.75e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.52e-27 | 76 |
bone element | 1.55e-24 | 82 |
skeletal element | 8.94e-22 | 90 |
hematopoietic system | 3.15e-21 | 98 |
blood island | 3.15e-21 | 98 |
immune system | 7.31e-21 | 93 |
skeletal system | 6.03e-19 | 100 |
hemolymphoid system | 1.23e-18 | 108 |
musculoskeletal system | 8.30e-09 | 167 |
lateral plate mesoderm | 6.77e-07 | 203 |
connective tissue | 7.55e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 6.17e-08 | 2 |