FFCP PHASE1:Hg19::chr9:136568685..136568722,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1757 | |EntrezGene=1757 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10536 | |HGNC=10536 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SYV2 | |UniProt=Q5SYV2 | ||
|association_with_transcript=100bp_to_ENST00000371868,uc004cen.2_5end | |association_with_transcript=100bp_to_ENST00000371868,uc004cen.2_5end | ||
|cluster_id=chr9:136568685..136568722,- | |||
|coexpression_cluster_id=C141 | |coexpression_cluster_id=C141 | ||
|description=CAGE_peak_4_at_SARDH_5end | |description=CAGE_peak_4_at_SARDH_5end | ||
|id=chr9:136568685..136568722,- | |id=chr9:136568685..136568722,- | ||
|ontology_enrichment_celltype=CL:0000817;1.81e-40;1!CL:0000123;5.15e-21;2!CL:0000242;5.15e-21;2!CL:0000312;3.10e-09;5!CL:0000240;6.55e-08;6!CL:0000311;6.55e-08;6!CL:0000079;6.55e-08;6!CL:0000237;6.55e-08;6!CL:0000542;1.19e-07;53!CL:0000084;2.43e-07;25 | |ontology_enrichment_celltype=CL:0000784!1.50e-13!3;CL:0000084!1.72e-09!25;CL:0000827!1.72e-09!25;CL:0000624!2.87e-07!6 | ||
| | |ontology_enrichment_celltype_v019=CL:0000817;1.81e-40;1!CL:0000123;5.15e-21;2!CL:0000242;5.15e-21;2!CL:0000312;3.10e-09;5!CL:0000240;6.55e-08;6!CL:0000311;6.55e-08;6!CL:0000079;6.55e-08;6!CL:0000237;6.55e-08;6!CL:0000542;1.19e-07;53!CL:0000084;2.43e-07;25 | ||
|ontology_enrichment_disease=DOID:2531;3.01e-09;51!DOID:0060083;3.01e-09;51!DOID:1240;3.40e-08;39 | |ontology_enrichment_celltype_v019_2=CL:0000242,5.70e-21,2;CL:0000817,1.60e-14,3;CL:0000312,3.22e-09,5;CL:0000240,6.78e-08,6;CL:0000311,6.78e-08,6;CL:0000079,6.78e-08,6;CL:0000237,6.78e-08,6;CL:0000036,6.78e-08,6;CL:0000357,6.78e-08,6;CL:0000114,6.78e-08,6;CL:0000838,1.20e-07,52;CL:0000542,1.62e-07,53;CL:0000051,1.62e-07,53;CL:0000084,2.43e-07,25;CL:0000827,2.43e-07,25 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019=CL:0000357;6.55e-08;6!CL:0000114;6.55e-08;6!CL:0000051;1.19e-07;53 | ||
|ontology_enrichment_disease=DOID:225!1.61e-10!1 | |||
|ontology_enrichment_disease_v019=DOID:2531;3.01e-09;51!DOID:0060083;3.01e-09;51!DOID:1240;3.40e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,4.06e-13,51;DOID:0060083,4.06e-13,51;DOID:1240,6.08e-10,39 | |||
|ontology_enrichment_uberon=UBERON:0002372!1.77e-10!1;UBERON:0001961!1.77e-10!1;UBERON:0001744!1.77e-10!1;UBERON:0001735!1.77e-10!1;UBERON:0002370!1.78e-10!4;UBERON:0005058!1.78e-10!4;UBERON:0009113!1.78e-10!4;UBERON:0003295!1.78e-10!4;UBERON:0005562!1.78e-10!4;UBERON:0001042!5.03e-09!10;UBERON:0009145!5.03e-09!10;UBERON:0006562!3.00e-08!11;UBERON:0003351!2.87e-07!6 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p4@SARDH | |short_description=p4@SARDH | ||
}} | }} |
Latest revision as of 07:39, 16 September 2015
Short description: | p4@SARDH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SARDH_5end |
Coexpression cluster: | C141_Hodgkin_acute_thymus_chronic_vein_CD4_B |
Association with transcript: | 100bp_to_ENST00000371868, uc004cen.2_5end |
EntrezGene: | SARDH |
HGNC: | 10536 |
UniProt: | Q5SYV2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.70e-21 | 2 |
precursor B cell | 1.60e-14 | 3 |
keratinocyte | 3.22e-09 | 5 |
stratified squamous epithelial cell | 6.78e-08 | 6 |
keratin accumulating cell | 6.78e-08 | 6 |
stratified epithelial cell | 6.78e-08 | 6 |
keratinizing barrier epithelial cell | 6.78e-08 | 6 |
epithelial fate stem cell | 6.78e-08 | 6 |
stratified epithelial stem cell | 6.78e-08 | 6 |
surface ectodermal cell | 6.78e-08 | 6 |
lymphoid lineage restricted progenitor cell | 1.20e-07 | 52 |
lymphocyte | 1.62e-07 | 53 |
common lymphoid progenitor | 1.62e-07 | 53 |
T cell | 2.43e-07 | 25 |
pro-T cell | 2.43e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.06e-13 | 51 |
immune system cancer | 4.06e-13 | 51 |
leukemia | 6.08e-10 | 39 |