FFCP PHASE1:Hg19::chr11:8008875..8008892,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8665 | |EntrezGene=8665 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3275 | |HGNC=3275 | ||
|TSSclassifier=strong | |||
|UniProt=O00303,E9PQV8,B4DMT5 | |UniProt=O00303,E9PQV8,B4DMT5 | ||
|association_with_transcript=0bp_to_ENST00000449102,ENST00000531329,ENST00000538607_5end | |association_with_transcript=0bp_to_ENST00000449102,ENST00000531329,ENST00000538607_5end | ||
|cluster_id=chr11:8008875..8008892,+ | |||
|description=CAGE_peak_1_at_EIF3F_5end | |description=CAGE_peak_1_at_EIF3F_5end | ||
|id=chr11:8008875..8008892,+ | |id=chr11:8008875..8008892,+ | ||
|ontology_enrichment_celltype=CL:0000115;6.40e-07;36 | |ontology_enrichment_celltype=CL:0000144!2.00e-24!625;CL:0002371!2.28e-23!591;CL:0000012!5.63e-15!682;CL:0000548!7.67e-14!679;CL:0000004!7.67e-14!679;CL:0000255!7.67e-14!679;CL:0000003!1.18e-13!722;CL:0000222!1.64e-10!119;CL:0000183!2.04e-09!59;CL:0000034!1.91e-08!444;CL:0002321!2.01e-08!248;CL:0000220!2.07e-08!246;CL:0000115!1.05e-07!35;CL:0000393!1.07e-07!60;CL:0000211!1.07e-07!60;CL:0000187!1.69e-07!54;CL:0000723!2.12e-07!436;CL:0000055!2.19e-07!180;CL:0000048!3.12e-07!430;CL:0000680!5.43e-07!57;CL:0000056!5.43e-07!57;CL:0000355!5.43e-07!57;CL:0000192!8.09e-07!42;CL:0000514!8.09e-07!42;CL:0002078!8.98e-07!44 | ||
| | |ontology_enrichment_celltype_v019=CL:0000115;6.40e-07;36 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,7.49e-11,121;CL:0000034,6.28e-09,441;CL:0002321,1.06e-08,250;CL:0000115,6.11e-08,36;CL:0000723,7.53e-08,433;CL:0000393,8.10e-08,61;CL:0000211,8.10e-08,61;CL:0000048,1.12e-07,427;CL:0000187,1.28e-07,55;CL:0000680,4.13e-07,58;CL:0000056,4.13e-07,58;CL:0000355,4.13e-07,58;CL:0002078,5.37e-07,45;CL:0000192,6.17e-07,43;CL:0000514,6.17e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.82e-10!83;UBERON:0002329!6.82e-10!83;UBERON:0003077!6.82e-10!83;UBERON:0003059!6.82e-10!83;UBERON:0007282!6.82e-10!83;UBERON:0009618!6.82e-10!83;UBERON:0007285!6.82e-10!83;UBERON:0004290!1.35e-09!70;UBERON:0000486!1.42e-09!82;UBERON:0002049!2.05e-09!79;UBERON:0007798!2.05e-09!79;UBERON:0000055!7.61e-08!69;UBERON:0001134!7.88e-08!61;UBERON:0002036!7.88e-08!61;UBERON:0003082!7.88e-08!61;UBERON:0005256!1.27e-07!143;UBERON:0002385!1.65e-07!63;UBERON:0001015!1.65e-07!63;UBERON:0000383!1.65e-07!63;UBERON:0000490!3.48e-07!138 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,5.11e-12,78;UBERON:0002329,1.02e-09,71;UBERON:0003059,1.02e-09,71;UBERON:0007282,1.02e-09,71;UBERON:0004290,1.02e-09,71;UBERON:0009618,1.02e-09,71;UBERON:0000486,1.07e-09,83;UBERON:0007524,1.43e-09,73;UBERON:0002049,2.57e-09,78;UBERON:0007798,2.57e-09,78;UBERON:0003077,3.39e-09,72;UBERON:0007285,3.39e-09,72;UBERON:0000490,9.10e-09,148;UBERON:0001134,5.97e-08,62;UBERON:0002036,5.97e-08,62;UBERON:0003082,5.97e-08,62;UBERON:0000055,9.47e-08,68;UBERON:0002385,1.25e-07,64;UBERON:0001015,1.25e-07,64;UBERON:0000383,1.25e-07,64;UBERON:0000926,7.07e-07,315;UBERON:0004120,7.07e-07,315;UBERON:0006603,7.07e-07,315;UBERON:0003104,9.03e-07,160;UBERON:0009142,9.03e-07,160 | |||
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| ||
|short_description=p1@EIF3F | |short_description=p1@EIF3F | ||
}} | }} |
Latest revision as of 16:54, 24 September 2015
Short description: | p1@EIF3F |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EIF3F_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000449102, ENST00000531329, ENST00000538607_5end |
EntrezGene: | EIF3F |
HGNC: | 3275 |
UniProt: | O00303E9PQV8B4DMT5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 7.49e-11 | 121 |
stem cell | 6.28e-09 | 441 |
embryonic cell | 1.06e-08 | 250 |
endothelial cell | 6.11e-08 | 36 |
somatic stem cell | 7.53e-08 | 433 |
electrically responsive cell | 8.10e-08 | 61 |
electrically active cell | 8.10e-08 | 61 |
multi fate stem cell | 1.12e-07 | 427 |
muscle cell | 1.28e-07 | 55 |
muscle precursor cell | 4.13e-07 | 58 |
myoblast | 4.13e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.13e-07 | 58 |
meso-epithelial cell | 5.37e-07 | 45 |
smooth muscle cell | 6.17e-07 | 43 |
smooth muscle myoblast | 6.17e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 5.11e-12 | 78 |
somite | 1.02e-09 | 71 |
presomitic mesoderm | 1.02e-09 | 71 |
presumptive segmental plate | 1.02e-09 | 71 |
dermomyotome | 1.02e-09 | 71 |
trunk paraxial mesoderm | 1.02e-09 | 71 |
multilaminar epithelium | 1.07e-09 | 83 |
dense mesenchyme tissue | 1.43e-09 | 73 |
vasculature | 2.57e-09 | 78 |
vascular system | 2.57e-09 | 78 |
paraxial mesoderm | 3.39e-09 | 72 |
presumptive paraxial mesoderm | 3.39e-09 | 72 |
unilaminar epithelium | 9.10e-09 | 148 |
skeletal muscle tissue | 5.97e-08 | 62 |
striated muscle tissue | 5.97e-08 | 62 |
myotome | 5.97e-08 | 62 |
vessel | 9.47e-08 | 68 |
muscle tissue | 1.25e-07 | 64 |
musculature | 1.25e-07 | 64 |
musculature of body | 1.25e-07 | 64 |
mesoderm | 7.07e-07 | 315 |
mesoderm-derived structure | 7.07e-07 | 315 |
presumptive mesoderm | 7.07e-07 | 315 |
mesenchyme | 9.03e-07 | 160 |
entire embryonic mesenchyme | 9.03e-07 | 160 |