FFCP PHASE1:Hg19::chr15:66994885..66994904,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4091 | |EntrezGene=4091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6772 | |HGNC=6772 | ||
|TSSclassifier=strong | |||
|UniProt=O43541 | |UniProt=O43541 | ||
|association_with_transcript=211bp_to_ENST00000457357,NM_005585,NR_027654,uc002aqf.2,uc010bhx.2_5end | |association_with_transcript=211bp_to_ENST00000457357,NM_005585,NR_027654,uc002aqf.2,uc010bhx.2_5end | ||
|cluster_id=chr15:66994885..66994904,+ | |||
|description=CAGE_peak_7_at_SMAD6_5end | |description=CAGE_peak_7_at_SMAD6_5end | ||
|id=chr15:66994885..66994904,+ | |id=chr15:66994885..66994904,+ | ||
|ontology_enrichment_celltype=CL:0000136;9.45e-23;13!CL:0002586;4.17e-13;3!CL:0000153;3.97e-11;9!CL:0000447;3.97e-11;9!CL:0000138;5.57e-11;6!CL:0000149;6.23e-10;4!CL:0002617;6.31e-09;2 | |ontology_enrichment_celltype=CL:0000153!1.37e-08!9;CL:0000447!1.37e-08!9;CL:0000136!4.97e-07!15 | ||
| | |ontology_enrichment_celltype_v019=CL:0000136;9.45e-23;13!CL:0002586;4.17e-13;3!CL:0000153;3.97e-11;9!CL:0000447;3.97e-11;9!CL:0000138;5.57e-11;6!CL:0000149;6.23e-10;4!CL:0002617;6.31e-09;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000136,8.88e-20,15;CL:0002586,4.05e-13,3;CL:0000153,3.92e-11,9;CL:0000447,3.92e-11,9;CL:0000058,5.41e-11,6;CL:0000138,5.41e-11,6;CL:0000149,6.09e-10,4;CL:0002617,3.04e-09,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000966;3.56e-13;5!UBERON:0005388;3.56e-13;5!UBERON:0001802;3.56e-13;5!UBERON:0001781;4.17e-13;3!UBERON:0001782;4.17e-13;3!UBERON:0004457;1.06e-10;9!UBERON:0000042;1.06e-10;9!UBERON:0003688;1.83e-10;6!UBERON:0002358;1.83e-10;6!UBERON:0003684;1.83e-10;6!UBERON:0001178;1.83e-10;6!UBERON:0005406;5.71e-09;2 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003103!8.99e-08!69;UBERON:0000489!3.21e-07!32;UBERON:0003075!6.56e-07!86;UBERON:0007284!6.56e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.56e-13;5!UBERON:0005388;3.56e-13;5!UBERON:0001802;3.56e-13;5!UBERON:0001781;4.17e-13;3!UBERON:0001782;4.17e-13;3!UBERON:0004457;1.06e-10;9!UBERON:0000042;1.06e-10;9!UBERON:0003688;1.83e-10;6!UBERON:0002358;1.83e-10;6!UBERON:0003684;1.83e-10;6!UBERON:0001178;1.83e-10;6!UBERON:0005406;5.71e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,4.05e-13,3;UBERON:0005424,4.05e-13,3;UBERON:0000966,7.16e-11,6;UBERON:0005388,7.16e-11,6;UBERON:0001802,7.16e-11,6;UBERON:0004457,9.44e-11,12;UBERON:0000042,9.44e-11,12;UBERON:0003688,4.33e-10,6;UBERON:0002358,4.33e-10,6;UBERON:0003684,4.33e-10,6;UBERON:0001178,4.33e-10,6;UBERON:0001781,6.09e-10,4;UBERON:0005406,3.43e-09,2 | |||
|phase1_expression=4.54195948176392,1.92690471501885,4.36958652697511,1.0007329835313,0.893922188854576,1.74467704820074,0,0,0.783556884599516,0,0,0,0,0.247532705920093,0,0,0,0,0,0.738726348460727,0.204000691244253,0,0.572471974262113,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,7.31420598941885,0.670700859703636,3.96373941714944,2.53007406669196,3.00802746381534,4.05570253090306,0.795285947051099,1.45990461090791,0.283604451492204,0.886917589850256,0.43917392846563,0.327447688744282,0,0,0.324547393654683,0,0,0,0,0,0.198762407366705,0,0.347140501607594,1.69592382577203,0.838998872419812,0.275118041940067,0.417989933073621,0,0,0,0,0,0,0.367663080345869,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0.560677600142307,1.06748995729705,0.24666754841716,0.622422070799533,0.134710672069688,0.817309515567294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0.717558542755448,0,0,1.50045548042201,0,0,0.18611685633159,0.506328996723799,0.194874010322397,0.252433774244115,0.0920498986422993,0.484938170456436,0,0,0.508681776931463,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.414644220061482,0,0,0,0,0,0,0,0.709840800239063,1.01150814046861,0.241011029883482,0.441175890929576,0.217879444092406,0.237270619111097,0.134831308160164,0.588664395376038,0.38474715694639,0.738155454624648,0,0.8231480226628,0,0,0,1.18157981336281,0,0,0.343135620597051,0,0,0,0,0,0,0,1.73895607462615,0,0.866198686566443,0,0.380508304469197,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0.899756920638513,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0.356857977594324,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0.841980283299221,1.15325234330131,1.02341449813341,0.160853921143607,5.93672265779964,0,0,0.328508624055237,0.519254429183621,0.116210378459959,0,0,0,0,0,0.524497659837696,0,0.15403067420883,0.784349769176855,0,0.316654886678627,1.13733384070897,0.170093705276516,0.431831832204279,1.54227252690289,0.270946437543853,1.00337954770971,0,0.831076008928724,0,0,0,2.56450125116389,19.3528640962826,2.60302715731442,0.9273691048295,0.0915694648183434,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0.143124886741991,0,0,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,1.13008116620243,0,0.66343897524122,0,0,0.655894752046633,0,0,0,0,0,0,0,4.22215270595328,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,1.69458841398202,0,0,0,0,0,0,0,0,0,0,0,0,6.40944426764839,0,0,0,0,0,0,0.798317485731266,0,0.846694330895531,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0.166849141711909,0,0,0,1.08182271390393,0.66614393599564,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0.422008249231538,0,0,0.63337622438398,0.597743964753209,0.276283915531148,0,0.409074730008619,0,0,0,0,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0.0874599999961957,0.724999575434793,0,0.254253650292766,0.236387681767936,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0.21787692703798,0.139423744278603,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.979396848954886,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0.202203398942031,0.802577647298789,0,0.182454789215666,0,0,0,0,0,0.947798694427319,0,0.103688191397247,0,0,0.313932918407225,0,0,0,0.694238953340524,0.0979923974143777,0,0,0,0.677294319023596,1.38869702463753,0.903270027585302,0.387956065953678,0.617792886840502,0.677942222341597,0,0,0.0633107959558787,0,0,0.213452994739353,0.599428828746391,0.144090417154106,0.572682980829578,0,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0.611989305817931,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0.717873024576814,0,0.858452096273142,0,0.470284307407084,0,0,0.0787831823072236,0,0.0674035438541849,0.295282444544246,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.315222829196793,1.57363764404994,0,0,0,0.714695326373367,0,0.5085370753095,0.542999601753713,0.864221491201268,0,0,0,0,0.906496732161005,1.17241786942466,0,0,0,0.513260513652988,0,1.81538601365081,0.157204305099666,2.89967338743037,0,0,0,0,2.1760712134779,1.2534494701135,1.83807346058077,2.95085367638824,0,0,0,0.1251909307065,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,3.55924488638614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0.214441591374926,0,0,0.231522474323834,0,0.537266523244462,1.85280868296583,0,0,0,0,2.30617366729152,1.72715170865599,1.21543982470953,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.107824811396682,0,0,0,0,0.123935764259002,0,0,0,0,0,0.3062454773532,0.0642292250964595,1.41696576325585,0,0,0.252071696221718,0.138314504928436,0,0,0.0981477185010256,0,0,0,0.381382095467167,0,0.596748666348824,0.300841313397029,0,0,0,0,0.147856086217045,0.135075169236789,0,0,0.0634158101939068,0.546974809018219,0,0,0,0.894336993477167,0,0.336283722218824,0,0,0.177404740325278,0,0,0.271878931907327,0.197318320688547,0,0.444925607568277,0.313972371402056,0.314231179832004,0.280272163313789,0,0.431855182437243,0.47775168788705,1.07214816264985,0,0.697448552208751,0.173858272302579,0,0,0,0,0,0.118332000730565,0,0.423387050190929,0,0,0,0.111855431797792,0,0.243835849964539,0,0,0,0.485710993059139,0,0.198950775161368,0.118920090777569,0.11294608203896,0,0,0,0.874238242015829,0,0,0,0.196308467114945,0.297046400327086,1.2679671827502,0.339854229375634,0,1.09578409555081,0,0.178553938605658,0,0,0.730336388246517,0,0.286679166302903,0.788857810965923,0.135982980381829,0,0,0,0.924351257262837,0,0,0.109265571963696,0.760191006068622,0,0,0,0,0.151557396436479,0,0,0.20686599172379,0,0.23806443146374,0,0,0.33639558774184,1.01835453245064,0.202117188958219,0,0,0.134704106029175,0.215166616178029,0,0.162806537221949,0,0,0.359300808426348,0,0,0,0.665756774185513,0.201273793591026,0 | |phase1_expression=4.54195948176392,1.92690471501885,4.36958652697511,1.0007329835313,0.893922188854576,1.74467704820074,0,0,0.783556884599516,0,0,0,0,0.247532705920093,0,0,0,0,0,0.738726348460727,0.204000691244253,0,0.572471974262113,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651083453856419,0,0,0,0,0,0,0,0,0,7.31420598941885,0.670700859703636,3.96373941714944,2.53007406669196,3.00802746381534,4.05570253090306,0.795285947051099,1.45990461090791,0.283604451492204,0.886917589850256,0.43917392846563,0.327447688744282,0,0,0.324547393654683,0,0,0,0,0,0.198762407366705,0,0.347140501607594,1.69592382577203,0.838998872419812,0.275118041940067,0.417989933073621,0,0,0,0,0,0,0.367663080345869,0,0,0,0.225222960966644,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0.560677600142307,1.06748995729705,0.24666754841716,0.622422070799533,0.134710672069688,0.817309515567294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300476117813194,0,0.717558542755448,0,0,1.50045548042201,0,0,0.18611685633159,0.506328996723799,0.194874010322397,0.252433774244115,0.0920498986422993,0.484938170456436,0,0,0.508681776931463,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.414644220061482,0,0,0,0,0,0,0,0.709840800239063,1.01150814046861,0.241011029883482,0.441175890929576,0.217879444092406,0.237270619111097,0.134831308160164,0.588664395376038,0.38474715694639,0.738155454624648,0,0.8231480226628,0,0,0,1.18157981336281,0,0,0.343135620597051,0,0,0,0,0,0,0,1.73895607462615,0,0.866198686566443,0,0.380508304469197,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0.899756920638513,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0.356857977594324,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0.841980283299221,1.15325234330131,1.02341449813341,0.160853921143607,5.93672265779964,0,0,0.328508624055237,0.519254429183621,0.116210378459959,0,0,0,0,0,0.524497659837696,0,0.15403067420883,0.784349769176855,0,0.316654886678627,1.13733384070897,0.170093705276516,0.431831832204279,1.54227252690289,0.270946437543853,1.00337954770971,0,0.831076008928724,0,0,0,2.56450125116389,19.3528640962826,2.60302715731442,0.9273691048295,0.0915694648183434,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0.143124886741991,0,0,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,1.13008116620243,0,0.66343897524122,0,0,0.655894752046633,0,0,0,0,0,0,0,4.22215270595328,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,1.69458841398202,0,0,0,0,0,0,0,0,0,0,0,0,6.40944426764839,0,0,0,0,0,0,0.798317485731266,0,0.846694330895531,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0.166849141711909,0,0,0,1.08182271390393,0.66614393599564,0,0,0.439524537815682,0,0,0,0.23874448473769,0,0,0,0.422008249231538,0,0,0.63337622438398,0.597743964753209,0.276283915531148,0,0.409074730008619,0,0,0,0,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0.0874599999961957,0.724999575434793,0,0.254253650292766,0.236387681767936,0,0,0,0,0.241192877250816,0,0,0,0.219385397153973,0.21787692703798,0.139423744278603,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.979396848954886,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0.202203398942031,0.802577647298789,0,0.182454789215666,0,0,0,0,0,0.947798694427319,0,0.103688191397247,0,0,0.313932918407225,0,0,0,0.694238953340524,0.0979923974143777,0,0,0,0.677294319023596,1.38869702463753,0.903270027585302,0.387956065953678,0.617792886840502,0.677942222341597,0,0,0.0633107959558787,0,0,0.213452994739353,0.599428828746391,0.144090417154106,0.572682980829578,0,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0.611989305817931,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0.717873024576814,0,0.858452096273142,0,0.470284307407084,0,0,0.0787831823072236,0,0.0674035438541849,0.295282444544246,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.315222829196793,1.57363764404994,0,0,0,0.714695326373367,0,0.5085370753095,0.542999601753713,0.864221491201268,0,0,0,0,0.906496732161005,1.17241786942466,0,0,0,0.513260513652988,0,1.81538601365081,0.157204305099666,2.89967338743037,0,0,0,0,2.1760712134779,1.2534494701135,1.83807346058077,2.95085367638824,0,0,0,0.1251909307065,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0,3.55924488638614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0.214441591374926,0,0,0.231522474323834,0,0.537266523244462,1.85280868296583,0,0,0,0,2.30617366729152,1.72715170865599,1.21543982470953,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.107824811396682,0,0,0,0,0.123935764259002,0,0,0,0,0,0.3062454773532,0.0642292250964595,1.41696576325585,0,0,0.252071696221718,0.138314504928436,0,0,0.0981477185010256,0,0,0,0.381382095467167,0,0.596748666348824,0.300841313397029,0,0,0,0,0.147856086217045,0.135075169236789,0,0,0.0634158101939068,0.546974809018219,0,0,0,0.894336993477167,0,0.336283722218824,0,0,0.177404740325278,0,0,0.271878931907327,0.197318320688547,0,0.444925607568277,0.313972371402056,0.314231179832004,0.280272163313789,0,0.431855182437243,0.47775168788705,1.07214816264985,0,0.697448552208751,0.173858272302579,0,0,0,0,0,0.118332000730565,0,0.423387050190929,0,0,0,0.111855431797792,0,0.243835849964539,0,0,0,0.485710993059139,0,0.198950775161368,0.118920090777569,0.11294608203896,0,0,0,0.874238242015829,0,0,0,0.196308467114945,0.297046400327086,1.2679671827502,0.339854229375634,0,1.09578409555081,0,0.178553938605658,0,0,0.730336388246517,0,0.286679166302903,0.788857810965923,0.135982980381829,0,0,0,0.924351257262837,0,0,0.109265571963696,0.760191006068622,0,0,0,0,0.151557396436479,0,0,0.20686599172379,0,0.23806443146374,0,0,0.33639558774184,1.01835453245064,0.202117188958219,0,0,0.134704106029175,0.215166616178029,0,0.162806537221949,0,0,0.359300808426348,0,0,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p7@SMAD6 | |short_description=p7@SMAD6 | ||
}} | }} |
Latest revision as of 16:42, 18 September 2015
Short description: | p7@SMAD6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SMAD6_5end |
Coexpression cluster: | NA |
Association with transcript: | 211bp_to_ENST00000457357, NM_005585, NR_027654, uc002aqf.2, uc010bhx.2_5end |
EntrezGene: | SMAD6 |
HGNC: | 6772 |
UniProt: | O43541 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 8.88e-20 | 15 |
retinal pigment epithelial cell | 4.05e-13 | 3 |
GAG secreting cell | 3.92e-11 | 9 |
carbohydrate secreting cell | 3.92e-11 | 9 |
chondroblast | 5.41e-11 | 6 |
chondrocyte | 5.41e-11 | 6 |
visual pigment cell | 6.09e-10 | 4 |
adipocyte of breast | 3.04e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 4.05e-13 | 3 |
presumptive retinal pigmented epithelium | 4.05e-13 | 3 |
retina | 7.16e-11 | 6 |
photoreceptor array | 7.16e-11 | 6 |
posterior segment of eyeball | 7.16e-11 | 6 |
cavity lining | 9.44e-11 | 12 |
serous membrane | 9.44e-11 | 12 |
omentum | 4.33e-10 | 6 |
peritoneum | 4.33e-10 | 6 |
abdominal cavity | 4.33e-10 | 6 |
visceral peritoneum | 4.33e-10 | 6 |
layer of retina | 6.09e-10 | 4 |
perirenal fat | 3.43e-09 | 2 |