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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005587
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005587
|accession_numbers=CAGE;DRX008507;DRR009379;DRZ000804;DRZ002189;DRZ012154;DRZ013539
|accession_numbers_RNASeq=sRNA-Seq;DRX037063;DRR041429;DRZ007071
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.97!92.32!SOX17;;chr11:34642612..34642646,+!p1@EHF!1.62!40.58!EHF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.97!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!125.20!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.45!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.93!CREB3L1;;chr4:81118647..81118666,+!p1@PRDM8!1.16!17.65!PRDM8;;chr12:54380404..54380433,+!p3@HOXC10!1.11!11.97!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.11!11.97!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.08!332.37!HMGA1;;chr7:1577899..1577943,+!p3@MAFK!1.08!11.16!MAFK;;chr12:54378923..54378966,+!p1@HOXC10!1.08!11.16!HOXC10;;chr18:19749541..19749557,+!p1@GATA6!1.05!32.47!GATA6;;chr1:151032860..151032918,+!p1@MLLT11!1.04!118.50!MLLT11;;chr12:66218255..66218304,+!p3@HMGA2!1.04!27.39!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.22!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.13!HOXA11;;chr4:174450089..174450153,-!p2@HAND2!1.01!9.13!HAND2;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.93!HOXB6;;chr18:19749386..19749404,+!p2@GATA6!0.99!12.58!GATA6;;chr4:111558135..111558198,-!p2@PITX2!0.99!8.73!PITX2;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.77!HMGA2;;chr9:35732647..35732678,+!p2@CREB3!0.98!48.50!CREB3;;chr7:27224795..27224840,-!p2@HOXA11!0.97!8.32!HOXA11;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.31!FOXD1;;chr9:35732514..35732530,+!p5@CREB3!0.93!10.96!CREB3;;chr4:111544219..111544240,-!p1@PITX2!0.92!7.30!PITX2;;chr12:54380036..54380091,+!p4@HOXC10!0.92!7.30!HOXC10;;chr5:72744445..72744466,-!p2@FOXD1!0.91!12.17!FOXD1;;chr1:151032922..151032951,+!p2@MLLT11!0.91!11.97!MLLT11;;chr12:54393880..54393962,+!p1@HOXC9!0.91!7.10!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.90!6.90!HOXC8;;chr11:61520075..61520136,+!p1@C11orf9!0.88!14.61!C11orf9;;chr12:26277817..26277863,-!p2@BHLHE41!0.87!8.93!BHLHE41;;chr1:8938709..8938720,-!p3@ENO1!0.86!317.15!ENO1;;chr17:46688334..46688385,-!p1@HOXB7!0.86!9.33!HOXB7;;chr6:134210243..134210257,+!p1@TCF21!0.86!6.29!TCF21;;chr1:37940170..37940190,+!p1@ZC3H12A!0.85!79.95!ZC3H12A;;chr16:86600870..86600921,+!p2@FOXC2!0.85!6.09!FOXC2;;chr19:42636586..42636607,-!p1@POU2F2!0.84!17.25!POU2F2;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.18!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.35!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.60!DRAP1;;chr17:46687959..46688007,-!p2@HOXB7!0.82!7.91!HOXB7;;chr11:34642656..34642667,+!p2@EHF!0.81!5.48!EHF;;chr12:54380112..54380126,+!p5@HOXC10!0.81!5.48!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.48!HOXA9;;chr7:150945865..150945896,-!p4@SMARCD3!0.80!5.28!SMARCD3;;chr4:174451370..174451387,-!p1@HAND2!0.80!5.28!HAND2;;chr10:94449703..94449718,+!p1@HHEX!0.77!20.49!HHEX;;chr7:35293685..35293718,-!p1@TBX20!0.77!4.87!TBX20;;chr17:59477233..59477263,+!p1@TBX2!0.76!16.03!TBX2;;chr12:124873357..124873401,-!p1@NCOR2!0.75!59.05!NCOR2;;chr5:134369905..134369972,-!p1@PITX1!0.75!7.51!PITX1;;chr20:30433396..30433414,-!p1@FOXS1!0.75!4.67!FOXS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.74!44.23!PPP1R13L;;chr12:27485762..27485776,+!p3@ARNTL2!0.74!13.19!ARNTL2;;chr12:66218904..66218913,+!p11@HMGA2!0.74!4.46!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.50!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.72!127.02!FOSL1;;chr12:54366975..54367001,+!p1@HOXC11!0.72!4.26!HOXC11;;chr11:65667884..65667895,-!p2@FOSL1!0.71!17.65!FOSL1;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.90!PAWR;;chr3:141087562..141087594,+!p12@ZBTB38!0.70!4.06!ZBTB38;;chr3:25469724..25469773,+!p1@RARB!0.69!5.88!RARB;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.65!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!0.66!10.96!OSR1;;chr15:83953397..83953425,-!p1@BNC1!0.66!4.26!BNC1;;chr12:26277956..26277980,-!p1@BHLHE41!0.65!14.20!BHLHE41;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.46!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!0.65!3.45!HOXD11;;chr1:8938736..8938756,-!p1@ENO1!0.64!4409.04!ENO1;;chr20:42543441..42543497,+!p1@TOX2!0.64!17.65!TOX2;;chr6:34204973..34204990,+!p4@HMGA1!0.63!51.13!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!0.63!8.93!TOX2;;chr1:151032782..151032801,+!p4@MLLT11!0.63!7.30!MLLT11;;chr2:5832508..5832524,+!p1@SOX11!0.63!3.25!SOX11;;chr12:54379029..54379057,+!p2@HOXC10!0.63!3.25!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.63!3.25!HOXC5;;chr9:35732592..35732640,+!p1@CREB3!0.62!50.12!CREB3;;chr21:30671690..30671762,+!p2@BACH1!0.62!12.38!BACH1;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.88!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.62!5.28!HMGA2;;chr2:71127699..71127744,+!p1@VAX2!0.61!7.10!VAX2;;chr12:66218183..66218209,+!p4@HMGA2!0.61!6.49!HMGA2;;chr2:192015701..192015743,-!p1@STAT4!0.61!4.46!STAT4;;chr12:66218923..66218934,+!p14@HMGA2!0.61!3.04!HMGA2;;chr1:8938766..8938774,-!p2@ENO1!0.60!249.78!ENO1;;chr3:141087393..141087426,+!p3@ZBTB38!0.60!14.00!ZBTB38;;chr20:50721803..50721857,-!p2@ZFP64!0.60!5.07!ZFP64;;chr6:34204672..34204692,+!p1@HMGA1!0.59!401.97!HMGA1;;chr15:96869114..968691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|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.97!92.32!SOX17;;chr11:34642612..34642646,+!p1@EHF!1.62!40.58!EHF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.97!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!125.20!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.45!FOXC2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.93!CREB3L1;;chr4:81118647..81118666,+!p1@PRDM8!1.16!17.65!PRDM8;;chr12:54380404..54380433,+!p3@HOXC10!1.11!11.97!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.11!11.97!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.08!332.37!HMGA1;;chr7:1577899..1577943,+!p3@MAFK!1.08!11.16!MAFK;;chr12:54378923..54378966,+!p1@HOXC10!1.08!11.16!HOXC10;;chr18:19749541..19749557,+!p1@GATA6!1.05!32.47!GATA6;;chr1:151032860..151032918,+!p1@MLLT11!1.04!118.50!MLLT11;;chr12:66218255..66218304,+!p3@HMGA2!1.04!27.39!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.01!43.22!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.13!HOXA11;;chr4:174450089..174450153,-!p2@HAND2!1.01!9.13!HAND2;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.93!HOXB6;;chr18:19749386..19749404,+!p2@GATA6!0.99!12.58!GATA6;;chr4:111558135..111558198,-!p2@PITX2!0.99!8.73!PITX2;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.77!HMGA2;;chr9:35732647..35732678,+!p2@CREB3!0.98!48.50!CREB3;;chr7:27224795..27224840,-!p2@HOXA11!0.97!8.32!HOXA11;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.31!FOXD1;;chr9:35732514..35732530,+!p5@CREB3!0.93!10.96!CREB3;;chr4:111544219..111544240,-!p1@PITX2!0.92!7.30!PITX2;;chr12:54380036..54380091,+!p4@HOXC10!0.92!7.30!HOXC10;;chr5:72744445..72744466,-!p2@FOXD1!0.91!12.17!FOXD1;;chr1:151032922..151032951,+!p2@MLLT11!0.91!11.97!MLLT11;;chr12:54393880..54393962,+!p1@HOXC9!0.91!7.10!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.90!6.90!HOXC8;;chr11:61520075..61520136,+!p1@C11orf9!0.88!14.61!C11orf9;;chr12:26277817..26277863,-!p2@BHLHE41!0.87!8.93!BHLHE41;;chr1:8938709..8938720,-!p3@ENO1!0.86!317.15!ENO1;;chr17:46688334..46688385,-!p1@HOXB7!0.86!9.33!HOXB7;;chr6:134210243..134210257,+!p1@TCF21!0.86!6.29!TCF21;;chr1:37940170..37940190,+!p1@ZC3H12A!0.85!79.95!ZC3H12A;;chr16:86600870..86600921,+!p2@FOXC2!0.85!6.09!FOXC2;;chr19:42636586..42636607,-!p1@POU2F2!0.84!17.25!POU2F2;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.18!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.83!10.35!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.60!DRAP1;;chr17:46687959..46688007,-!p2@HOXB7!0.82!7.91!HOXB7;;chr11:34642656..34642667,+!p2@EHF!0.81!5.48!EHF;;chr12:54380112..54380126,+!p5@HOXC10!0.81!5.48!HOXC10;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.48!HOXA9;;chr7:150945865..150945896,-!p4@SMARCD3!0.80!5.28!SMARCD3;;chr4:174451370..174451387,-!p1@HAND2!0.80!5.28!HAND2;;chr10:94449703..94449718,+!p1@HHEX!0.77!20.49!HHEX;;chr7:35293685..35293718,-!p1@TBX20!0.77!4.87!TBX20;;chr17:59477233..59477263,+!p1@TBX2!0.76!16.03!TBX2;;chr12:124873357..124873401,-!p1@NCOR2!0.75!59.05!NCOR2;;chr5:134369905..134369972,-!p1@PITX1!0.75!7.51!PITX1;;chr20:30433396..30433414,-!p1@FOXS1!0.75!4.67!FOXS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.74!44.23!PPP1R13L;;chr12:27485762..27485776,+!p3@ARNTL2!0.74!13.19!ARNTL2;;chr12:66218904..66218913,+!p11@HMGA2!0.74!4.46!HMGA2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.50!TAX1BP3;;chr11:65667846..65667868,-!p1@FOSL1!0.72!127.02!FOSL1;;chr12:54366975..54367001,+!p1@HOXC11!0.72!4.26!HOXC11;;chr11:65667884..65667895,-!p2@FOSL1!0.71!17.65!FOSL1;;chr12:80085061..80085119,-!p6@PAWR!0.71!6.90!PAWR;;chr3:141087562..141087594,+!p12@ZBTB38!0.70!4.06!ZBTB38;;chr3:25469724..25469773,+!p1@RARB!0.69!5.88!RARB;;chr11:46299443..46299459,+!p4@CREB3L1!0.67!3.65!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!0.66!10.96!OSR1;;chr15:83953397..83953425,-!p1@BNC1!0.66!4.26!BNC1;;chr12:26277956..26277980,-!p1@BHLHE41!0.65!14.20!BHLHE41;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.46!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!0.65!3.45!HOXD11;;chr1:8938736..8938756,-!p1@ENO1!0.64!4409.04!ENO1;;chr20:42543441..42543497,+!p1@TOX2!0.64!17.65!TOX2;;chr6:34204973..34204990,+!p4@HMGA1!0.63!51.13!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!0.63!8.93!TOX2;;chr1:151032782..151032801,+!p4@MLLT11!0.63!7.30!MLLT11;;chr2:5832508..5832524,+!p1@SOX11!0.63!3.25!SOX11;;chr12:54379029..54379057,+!p2@HOXC10!0.63!3.25!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.63!3.25!HOXC5;;chr9:35732592..35732640,+!p1@CREB3!0.62!50.12!CREB3;;chr21:30671690..30671762,+!p2@BACH1!0.62!12.38!BACH1;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.88!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.62!5.28!HMGA2;;chr2:71127699..71127744,+!p1@VAX2!0.61!7.10!VAX2;;chr12:66218183..66218209,+!p4@HMGA2!0.61!6.49!HMGA2;;chr2:192015701..192015743,-!p1@STAT4!0.61!4.46!STAT4;;chr12:66218923..66218934,+!p14@HMGA2!0.61!3.04!HMGA2;;chr1:8938766..8938774,-!p2@ENO1!0.60!249.78!ENO1;;chr3:141087393..141087426,+!p3@ZBTB38!0.60!14.00!ZBTB38;;chr20:50721803..50721857,-!p2@ZFP64!0.60!5.07!ZFP64;;chr6:34204672..34204692,+!p1@HMGA1!0.59!401.97!HMGA1;;chr15:96869114..968691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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor1.CNhs11091.11290-117A3.hg38.nobarcode.ctss.bed.gz
|id=FF:11290-117A3
|id=FF:11290-117A3
|is_a=CL:0002594;;EFO:0002091;;FF:0000167;;FF:0000210
|is_a=CL:0002594;;EFO:0002091;;FF:0000167;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs11091
|library_id_phase_based=2:CNhs11091
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11290
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTCCGC.11290
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11290
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTCCGC.11290
|name=Smooth Muscle Cells - Umbilical Artery, donor1
|name=Smooth Muscle Cells - Umbilical Artery, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11091,LSID724,release008,COMPLETED
|profile_hcage=CNhs11091,LSID724,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
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|rna_box=117
|rna_box=117
|rna_catalog_number=CA252-R10n
|rna_catalog_number=CA252-R10n
Line 60: Line 82:
|rna_tube_id=117A3
|rna_tube_id=117A3
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10005.GTCCGC
|sample_age=neonatal
|sample_age=neonatal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 82: Line 106:
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|top_motifs=SRF:1.99009551903;GTF2A1,2:1.54357716842;HOX{A5,B5}:1.51221815614;PPARG:1.43476968909;CRX:1.26580281245;TP53:1.20368089187;HIF1A:1.18116578484;PAX8:1.11218436655;ADNP_IRX_SIX_ZHX:1.0495266116;EN1,2:1.00732174067;ZNF148:0.978859440105;IKZF1:0.964699490127;SOX17:0.927376337053;NFE2L1:0.921176728581;GLI1..3:0.896061711538;ONECUT1,2:0.875836028304;HAND1,2:0.866945626428;HES1:0.817030442645;TFAP4:0.796205397753;STAT5{A,B}:0.779914798671;ZBTB6:0.750714666733;TEAD1:0.732975614247;NFATC1..3:0.729782176389;POU3F1..4:0.700832309361;TBX4,5:0.691602543248;TFAP2{A,C}:0.668515013599;TBP:0.667023810548;MAFB:0.66180011479;GCM1,2:0.648283700359;NR3C1:0.635698581438;ATF6:0.630551067325;HMGA1,2:0.62879212817;EBF1:0.62608887948;FOX{I1,J2}:0.557810162149;TLX1..3_NFIC{dimer}:0.551434936008;GFI1B:0.534969931227;TFCP2:0.529418349729;FOSL2:0.524734499685;NFE2L2:0.522350016729;ZNF238:0.514904318332;KLF4:0.498082582421;MYBL2:0.492012627879;SMAD1..7,9:0.473354241257;FOXL1:0.448494503771;BACH2:0.435971873623;HMX1:0.423077014112;NR5A1,2:0.418710864591;AR:0.409766153631;ZIC1..3:0.402831218807;LHX3,4:0.395166185014;FOS_FOS{B,L1}_JUN{B,D}:0.379687732526;XCPE1{core}:0.37210637532;HSF1,2:0.351663507619;SOX{8,9,10}:0.344532985639;POU6F1:0.322598134914;MEF2{A,B,C,D}:0.317214403483;TEF:0.312488659872;NKX3-2:0.310652074865;ELK1,4_GABP{A,B1}:0.308213104041;JUN:0.306728190525;ESR1:0.290367127266;GZF1:0.273816535277;MTE{core}:0.271253937484;ZNF384:0.264731439197;XBP1:0.26305780639;LEF1_TCF7_TCF7L1,2:0.259436664922;POU1F1:0.259253986494;NR6A1:0.244615560267;REST:0.23638316121;RXR{A,B,G}:0.235708823264;HLF:0.235334631388;VSX1,2:0.209138133076;SOX2:0.206855709615;NHLH1,2:0.205621760808;TAL1_TCF{3,4,12}:0.2016107689;NFE2:0.19500078166;UFEwm:0.194364313291;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.179414954515;GATA6:0.168563937556;NKX2-3_NKX2-5:0.16437637381;HIC1:0.162403226779;HBP1_HMGB_SSRP1_UBTF:0.153466624137;ALX4:0.144813418764;bHLH_family:0.138839919221;POU2F1..3:0.137369627886;ARID5B:0.124508363036;GTF2I:0.123895138223;PRDM1:0.118313190101;NANOG{mouse}:0.110750137765;MYOD1:0.105812044045;TFAP2B:0.105271439065;NANOG:0.0895661393571;CDC5L:0.081094728291;AHR_ARNT_ARNT2:0.06101716491;NFKB1_REL_RELA:0.0576804629357;HNF1A:0.0566799731667;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0514376145257;ZNF423:0.0466416693458;PBX1:0.0370315257636;PAX5:0.0342340633776;NKX2-2,8:0.0192970264889;NFIX:0.00802384982266;SPZ1:-0.00865058634691;NKX3-1:-0.013427132743;RXRA_VDR{dimer}:-0.0147055118797;EVI1:-0.0251123003301;ETS1,2:-0.0271449501028;DBP:-0.043350368236;FOX{F1,F2,J1}:-0.0518366565446;ALX1:-0.0538980625857;RUNX1..3:-0.0751439041785;PAX1,9:-0.111169229643;MAZ:-0.121843547767;ZNF143:-0.125235627039;PAX2:-0.139389881256;MZF1:-0.140540167156;TFDP1:-0.142553629567;CEBPA,B_DDIT3:-0.146613228966;PDX1:-0.149902365323;LMO2:-0.157683235367;PITX1..3:-0.165879366971;GATA4:-0.169588733955;OCT4_SOX2{dimer}:-0.173656934548;ZFP161:-0.176547531566;PATZ1:-0.180845729294;EP300:-0.216650387739;MYB:-0.217183484607;TOPORS:-0.219053158256;POU5F1:-0.220821710969;SP1:-0.225549157785;ESRRA:-0.228385395805;ELF1,2,4:-0.241700539424;FOXA2:-0.25355608363;GFI1:-0.261734114274;YY1:-0.262839867328;RFX1:-0.267527729747;NRF1:-0.281416672003;STAT2,4,6:-0.284455942585;AIRE:-0.289229163883;ATF2:-0.289853733481;MTF1:-0.308777791314;DMAP1_NCOR{1,2}_SMARC:-0.336407133998;RREB1:-0.352575252239;HNF4A_NR2F1,2:-0.362197571743;RORA:-0.362618180717;EGR1..3:-0.378346895587;PRRX1,2:-0.399028988326;SPI1:-0.424610559225;ZEB1:-0.442625568578;MYFfamily:-0.450323325323;FOX{D1,D2}:-0.455210550226;TGIF1:-0.457367301071;HOX{A6,A7,B6,B7}:-0.463208777292;T:-0.466772209922;NFIL3:-0.46992921107;SPIB:-0.472832231924;MED-1{core}:-0.528906433098;SNAI1..3:-0.533883176222;HOXA9_MEIS1:-0.535050653827;PAX6:-0.535169900937;PAX3,7:-0.563322792498;ATF4:-0.659977038627;NFY{A,B,C}:-0.66460904689;ATF5_CREB3:-0.685913686694;HOX{A4,D4}:-0.6985259115;FOXQ1:-0.71468005656;TLX2:-0.751805483155;CREB1:-0.756739881171;PAX4:-0.759852700529;IKZF2:-0.760717977752;CUX2:-0.77071152849;E2F1..5:-0.771634704568;FOXM1:-0.779281321007;NKX2-1,4:-0.791686625064;SREBF1,2:-0.793135854948;IRF1,2:-0.831113659217;NR1H4:-0.845516958707;IRF7:-0.878677656124;FOXD3:-0.928677751275;SOX5:-0.947899599516;RFX2..5_RFXANK_RFXAP:-0.95648300633;CDX1,2,4:-0.973642102348;BREu{core}:-1.02823898174;ZBTB16:-1.02940079777;STAT1,3:-1.09776376735;FOXP3:-1.10265957168;FOXN1:-1.10295778058;BPTF:-1.18439507682;FOXP1:-1.27200010821;FOXO1,3,4:-1.27728202876;NKX6-1,2:-1.41240287779;RBPJ:-2.18996424925
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11290-117A3;search_select_hide=table117:FF:11290-117A3
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:Smooth Muscle Cells - Umbilical Artery, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11091
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical artery
dev stageinfant
sexfemale
ageneonatal
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1222
catalog numberCA252-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005587
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11091 CAGE DRX008507 DRR009379
Accession ID Hg19

Library idBAMCTSS
CNhs11091 DRZ000804 DRZ002189
Accession ID Hg38

Library idBAMCTSS
CNhs11091 DRZ012154 DRZ013539
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005587
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.GTCCGC sRNA-Seq DRX037063 DRR041429
Accession ID Hg19

Library idBAMCTSS
SRhi10005.GTCCGC DRZ007071


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.178
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.217
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.419
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-9.645669e-4
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.36
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.386
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.148
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.232
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.151
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0802
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0167
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0802
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.107
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.00575
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.148
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.148
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.472
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.95
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.304
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.384
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11091

Jaspar motifP-value
MA0002.20.212
MA0003.10.277
MA0004.10.484
MA0006.10.201
MA0007.10.14
MA0009.10.154
MA0014.10.915
MA0017.10.508
MA0018.20.00426
MA0019.10.303
MA0024.16.40844e-8
MA0025.10.336
MA0027.10.729
MA0028.10.915
MA0029.10.124
MA0030.10.709
MA0031.10.162
MA0035.20.2
MA0038.10.237
MA0039.20.927
MA0040.10.535
MA0041.10.343
MA0042.10.659
MA0043.10.057
MA0046.10.919
MA0047.20.681
MA0048.10.172
MA0050.11.31471e-9
MA0051.10.00519
MA0052.10.376
MA0055.10.36
MA0057.10.332
MA0058.10.241
MA0059.10.343
MA0060.10.00794
MA0061.10.395
MA0062.20.172
MA0065.20.301
MA0066.10.152
MA0067.10.0366
MA0068.10.99
MA0069.10.883
MA0070.10.72
MA0071.10.773
MA0072.10.229
MA0073.10.36
MA0074.10.236
MA0076.10.608
MA0077.10.0671
MA0078.10.142
MA0079.20.872
MA0080.20.00343
MA0081.10.182
MA0083.12.68064e-10
MA0084.10.68
MA0087.10.789
MA0088.10.424
MA0090.10.00124
MA0091.10.337
MA0092.10.0358
MA0093.10.449
MA0099.23.02487e-15
MA0100.10.161
MA0101.10.341
MA0102.20.0424
MA0103.10.278
MA0104.20.208
MA0105.10.352
MA0106.10.00805
MA0107.10.151
MA0108.25.51589e-5
MA0111.10.0595
MA0112.20.0126
MA0113.10.229
MA0114.10.646
MA0115.10.407
MA0116.10.586
MA0117.10.639
MA0119.10.115
MA0122.10.807
MA0124.10.343
MA0125.10.986
MA0131.10.416
MA0135.10.446
MA0136.10.189
MA0137.20.0596
MA0138.20.686
MA0139.10.65
MA0140.10.188
MA0141.10.771
MA0142.10.722
MA0143.10.93
MA0144.10.851
MA0145.10.113
MA0146.10.315
MA0147.10.527
MA0148.10.327
MA0149.10.479
MA0150.10.0339
MA0152.10.851
MA0153.10.973
MA0154.10.246
MA0155.10.0708
MA0156.10.776
MA0157.10.604
MA0159.10.544
MA0160.10.708
MA0162.10.0228
MA0163.10.0158
MA0164.10.756
MA0258.10.162
MA0259.10.904



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11091

Novel motifP-value
10.602
100.449
1000.918
1010.392
1020.816
1030.266
1040.397
1050.64
1060.0158
1070.0302
1080.438
1090.102
110.12
1100.518
1110.744
1120.511
1130.109
1140.132
1150.903
1160.168
1170.728
1180.804
1190.0683
120.698
1200.11
1210.503
1220.469
1230.0103
1240.379
1250.829
1260.815
1270.561
1280.145
1290.989
130.991
1300.548
1310.0788
1320.906
1330.885
1340.177
1350.0216
1360.853
1370.631
1380.236
1390.0832
140.621
1400.483
1410.152
1420.869
1430.00956
1440.598
1450.189
1460.302
1470.206
1480.818
1490.121
150.421
1500.0797
1510.484
1520.0233
1530.605
1540.896
1550.0529
1560.789
1570.441
1580.0537
1590.362
160.205
1600.0915
1610.945
1620.435
1630.712
1640.472
1650.586
1660.915
1670.628
1680.48
1690.0701
170.0911
180.0983
190.129
20.34
200.534
210.797
220.203
230.0487
240.0927
250.496
260.676
270.724
280.416
290.308
30.439
300.594
310.372
322.73488e-4
330.487
340.482
350.493
360.477
370.054
380.914
390.42
40.333
400.185
410.302
420.587
430.31
440.713
450.342
460.218
470.335
480.224
490.498
50.487
500.479
510.889
520.416
530.48
540.777
550.569
560.385
570.276
580.589
590.116
60.981
600.375
610.906
620.83
630.14
640.52
650.353
660.687
670.342
680.205
690.624
70.994
700.0861
710.41
720.662
730.0109
740.954
750.357
760.458
770.0253
780.487
790.317
80.0853
800.376
810.652
820.274
830.979
840.786
850.0857
860.76
870.0187
880.0874
890.0661
90.268
900.993
910.743
920.338
930.291
940.74
950.295
960.908
970.402
980.457
990.00219



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11091


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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