FF:10711-109H9: Difference between revisions

Latest revision as of 15:01, 3 June 2020

Name:	fibrous histiocytoma cell line:GCT TIB-223
Species:	Human (Homo sapiens)
Library ID:	CNhs11842
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	male
age	29
cell type	unclassifiable
cell line	GCT TIB-223
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005056

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11842		CAGE		DRX007887		DRR008759

Accession ID Hg19

Library id		BAM		CTSS
CNhs11842		DRZ000184		DRZ001569

Accession ID Hg38

Library id		BAM		CTSS
CNhs11842		DRZ011534		DRZ012919

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.362
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.566
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.073
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0732
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0662
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.546
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.602
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0787
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.641
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.179
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11842

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.152
MA0003.1	MA0003.1	0.122
MA0004.1	MA0004.1	0.0518
MA0006.1	MA0006.1	0.644
MA0007.1	MA0007.1	0.369
MA0009.1	MA0009.1	0.63
MA0014.1	MA0014.1	0.61
MA0017.1	MA0017.1	0.382
MA0018.2	MA0018.2	0.237
MA0019.1	MA0019.1	0.878
MA0024.1	MA0024.1	2.10951e-6
MA0025.1	MA0025.1	0.169
MA0027.1	MA0027.1	0.914
MA0028.1	MA0028.1	2.59524e-15
MA0029.1	MA0029.1	0.86
MA0030.1	MA0030.1	0.0905
MA0031.1	MA0031.1	0.119
MA0035.2	MA0035.2	0.285
MA0038.1	MA0038.1	4.39357e-5
MA0039.2	MA0039.2	0.119
MA0040.1	MA0040.1	0.0969
MA0041.1	MA0041.1	0.282
MA0042.1	MA0042.1	0.468
MA0043.1	MA0043.1	0.0971
MA0046.1	MA0046.1	0.0568
MA0047.2	MA0047.2	0.322
MA0048.1	MA0048.1	0.00102
MA0050.1	MA0050.1	0.449
MA0051.1	MA0051.1	0.188
MA0052.1	MA0052.1	0.132
MA0055.1	MA0055.1	0.00142
MA0057.1	MA0057.1	0.997
MA0058.1	MA0058.1	0.0287
MA0059.1	MA0059.1	0.0154
MA0060.1	MA0060.1	4.22856e-13
MA0061.1	MA0061.1	0.983
MA0062.2	MA0062.2	4.96817e-17
MA0065.2	MA0065.2	0.867
MA0066.1	MA0066.1	0.674
MA0067.1	MA0067.1	0.926
MA0068.1	MA0068.1	0.765
MA0069.1	MA0069.1	0.892
MA0070.1	MA0070.1	0.737
MA0071.1	MA0071.1	0.911
MA0072.1	MA0072.1	0.564
MA0073.1	MA0073.1	0.916
MA0074.1	MA0074.1	0.635
MA0076.1	MA0076.1	1.22373e-18
MA0077.1	MA0077.1	0.947
MA0078.1	MA0078.1	0.259
MA0079.2	MA0079.2	0.0193
MA0080.2	MA0080.2	0.174
MA0081.1	MA0081.1	0.302
MA0083.1	MA0083.1	0.00624
MA0084.1	MA0084.1	0.723
MA0087.1	MA0087.1	0.256
MA0088.1	MA0088.1	1.34694e-6
MA0090.1	MA0090.1	0.723
MA0091.1	MA0091.1	0.0142
MA0092.1	MA0092.1	0.453
MA0093.1	MA0093.1	0.0275
MA0099.2	MA0099.2	6.95335e-12
MA0100.1	MA0100.1	0.0649
MA0101.1	MA0101.1	0.0994
MA0102.2	MA0102.2	0.251
MA0103.1	MA0103.1	0.0268
MA0104.2	MA0104.2	0.00233
MA0105.1	MA0105.1	0.318
MA0106.1	MA0106.1	0.679
MA0107.1	MA0107.1	0.351
MA0108.2	MA0108.2	0.749
MA0111.1	MA0111.1	0.98
MA0112.2	MA0112.2	0.0766
MA0113.1	MA0113.1	0.105
MA0114.1	MA0114.1	0.904
MA0115.1	MA0115.1	0.421
MA0116.1	MA0116.1	0.793
MA0117.1	MA0117.1	0.436
MA0119.1	MA0119.1	0.6
MA0122.1	MA0122.1	0.337
MA0124.1	MA0124.1	0.799
MA0125.1	MA0125.1	0.775
MA0131.1	MA0131.1	0.277
MA0135.1	MA0135.1	0.034
MA0136.1	MA0136.1	0.00281
MA0137.2	MA0137.2	0.942
MA0138.2	MA0138.2	0.21
MA0139.1	MA0139.1	0.949
MA0140.1	MA0140.1	0.915
MA0141.1	MA0141.1	0.746
MA0142.1	MA0142.1	0.476
MA0143.1	MA0143.1	0.446
MA0144.1	MA0144.1	0.573
MA0145.1	MA0145.1	0.164
MA0146.1	MA0146.1	0.0238
MA0147.1	MA0147.1	0.00334
MA0148.1	MA0148.1	0.314
MA0149.1	MA0149.1	0.00509
MA0150.1	MA0150.1	0.275
MA0152.1	MA0152.1	0.287
MA0153.1	MA0153.1	0.00729
MA0154.1	MA0154.1	0.325
MA0155.1	MA0155.1	0.2
MA0156.1	MA0156.1	7.52554e-10
MA0157.1	MA0157.1	0.803
MA0159.1	MA0159.1	0.895
MA0160.1	MA0160.1	0.414
MA0162.1	MA0162.1	0.939
MA0163.1	MA0163.1	0.129
MA0164.1	MA0164.1	0.45
MA0258.1	MA0258.1	0.0681
MA0259.1	MA0259.1	0.0389

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11842

Novel motif	Logo	P-value
1	1	0.211
10	10	0.117
100	100	0.261
101	101	0.429
102	102	0.423
103	103	0.684
104	104	0.995
105	105	0.354
106	106	0.389
107	107	0.785
108	108	0.965
109	109	0.831
11	11	0.675
110	110	0.287
111	111	0.13
112	112	0.215
113	113	0.209
114	114	0.676
115	115	0.397
116	116	0.78
117	117	0.178
118	118	0.786
119	119	0.416
12	12	0.838
120	120	0.399
121	121	0.89
122	122	0.771
123	123	0.931
124	124	0.271
125	125	0.304
126	126	0.738
127	127	0.316
128	128	0.17
129	129	0.991
13	13	0.106
130	130	0.0676
131	131	0.112
132	132	0.15
133	133	0.109
134	134	0.098
135	135	0.086
136	136	0.0745
137	137	0.673
138	138	0.497
139	139	0.036
14	14	0.322
140	140	0.181
141	141	0.974
142	142	0.52
143	143	0.63
144	144	0.788
145	145	0.585
146	146	0.418
147	147	0.684
148	148	0.867
149	149	0.0788
15	15	0.72
150	150	0.219
151	151	0.0938
152	152	0.226
153	153	0.178
154	154	0.718
155	155	0.289
156	156	0.917
157	157	0.269
158	158	0.433
159	159	0.143
16	16	0.357
160	160	0.681
161	161	0.408
162	162	0.589
163	163	0.992
164	164	0.84
165	165	0.614
166	166	0.28
167	167	0.722
168	168	0.723
169	169	0.0716
17	17	0.632
18	18	0.929
19	19	0.198
2	2	0.192
20	20	0.275
21	21	0.235
22	22	0.131
23	23	0.011
24	24	0.404
25	25	0.669
26	26	0.13
27	27	0.191
28	28	0.948
29	29	0.212
3	3	0.56
30	30	0.125
31	31	0.258
32	32	0.00511
33	33	0.508
34	34	0.182
35	35	0.649
36	36	0.205
37	37	0.716
38	38	0.812
39	39	0.32
4	4	0.302
40	40	0.617
41	41	0.264
42	42	0.283
43	43	0.662
44	44	0.918
45	45	0.281
46	46	0.578
47	47	0.372
48	48	0.268
49	49	0.652
5	5	0.129
50	50	0.824
51	51	0.329
52	52	0.0145
53	53	0.609
54	54	0.31
55	55	0.988
56	56	0.917
57	57	0.388
58	58	0.283
59	59	0.104
6	6	0.233
60	60	0.0717
61	61	0.533
62	62	0.289
63	63	0.924
64	64	0.755
65	65	0.205
66	66	9.64945e-6
67	67	0.223
68	68	0.605
69	69	0.138
7	7	0.892
70	70	0.343
71	71	0.675
72	72	0.313
73	73	0.981
74	74	0.31
75	75	0.107
76	76	0.268
77	77	0.507
78	78	0.827
79	79	0.218
8	8	0.419
80	80	0.129
81	81	0.791
82	82	0.0401
83	83	0.0402
84	84	0.813
85	85	0.0385
86	86	0.732
87	87	0.122
88	88	0.711
89	89	0.272
9	9	0.371
90	90	0.466
91	91	0.0225
92	92	0.162
93	93	0.816
94	94	0.726
95	95	0.423
96	96	0.602
97	97	0.616
98	98	0.673
99	99	0.621

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11842

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103766 giant cell tumor cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000054 (bone matrix secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0002092 (bone marrow cell)
0000137 (osteocyte)
0000092 (osteoclast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
0060072 (benign neoplasm)
0060085 (organ system benign neoplasm)
7 (disease of anatomical entity)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
3165 (skin benign neoplasm)
0060121 (integumentary system benign neoplasm)
200 (giant cell tumor)
2438 (dermis tumor)
4305 (bone giant cell tumor)
4418 (cutaneous fibrous histiocytoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0002097 (skin of body)
0002199 (integument)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100583 (bone marrow cancer cell sample)
0100372 (bone cancer cell)
0100969 (osteoclastoma cell sample)
0103765 (dermatofibroma cell line)
0103766 (giant cell tumor cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005056
+|accession_numbers=CAGE;DRX007887;DRR008759;DRZ000184;DRZ001569;DRZ011534;DRZ012919
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0002097,UBERON:0002199,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002320,CL:0002371,CL:0000766,CL:0000219,CL:0000054,CL:0000738,CL:0000255,CL:0002092,CL:0000137,CL:0000092
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:66218255..66218304,+!p3@HMGA2!2.04!281.18!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.79!265.28!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.76!80.08!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.64!80.68!HMGA2;;chr2:223163706..223163730,-!p1@PAX3!1.56!35.57!PAX3;;chr12:66218378..66218401,+!p6@HMGA2!1.54!51.67!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.48!29.41!FOXG1;;chr12:66218836..66218888,+!p1@HMGA2!1.45!241.24!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.43!32.59!HMGA2;;chr8:23564065..23564087,-!p1@NKX2-6!1.31!19.47!NKX2-6;;chr12:66218469..66218477,+!p16@HMGA2!1.28!18.08!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!1.26!17.29!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.24!24.24!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!1.21!18.28!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.20!57.03!FOSL1;;chr19:9811125..9811144,-!p2@ZNF812!1.17!13.71!ZNF812;;chr2:200322654..200322707,-!p2@SATB2!1.15!18.88!SATB2;;chr15:83953397..83953425,-!p1@BNC1!1.14!14.70!BNC1;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!16.10!TFAP2C;;chr12:66218152..66218174,+!p10@HMGA2!1.12!13.12!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!1.10!11.72!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!1.08!18.68!TFAP2A;;chr14:29236269..29236285,+!p3@FOXG1!1.08!11.13!FOXG1;;chr16:86544113..86544145,+!p1@FOXF1!1.03!12.12!FOXF1;;chr19:42636586..42636607,-!p1@POU2F2!1.02!26.83!POU2F2;;chr12:66218904..66218913,+!p11@HMGA2!1.02!9.54!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.01!9.34!HMGA2;;chr6:29648890..29648944,-!p1@ZFP57!1.00!8.94!ZFP57;;chr11:65667846..65667868,-!p1@FOSL1!0.99!234.28!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.50!DRAP1;;chr19:9609272..9609297,-!p1@ZNF560!0.97!8.35!ZNF560;;chr17:35294075..35294102,+!p1@ENST00000559335!0.96!8.15!LHX1;;chr3:169381420..169381535,-!p1@MECOM!0.95!9.34!MECOM;;chrX:132352373..132352384,-!p1@TFDP3!0.94!7.75!TFDP3;;chr6:34204921..34204939,+!p3@HMGA1!0.90!219.98!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.89!60.21!TBX3;;chr14:29236169..29236216,+!p6@FOXG1!0.89!6.76!FOXG1;;chr21:38071430..38071456,+!p1@SIM2!0.89!6.76!SIM2;;chr11:65686732..65686756,+!p2@DRAP1!0.87!28.61!DRAP1;;chr19:22235279..22235301,+!p1@ZNF257!0.87!12.52!ZNF257;;chr1:158985493..158985535,+!p4@IFI16!0.87!10.13!IFI16;;chr1:170633348..170633399,+!p2@PRRX1!0.87!8.94!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.87!6.36!SIM2;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.36!HMGA2;;chr17:8027418..8027432,-!p1@HES7!0.87!6.36!HES7;;chr6:10415276..10415341,-!p2@TFAP2A!0.85!7.55!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!0.85!6.16!HOXB6;;chr12:85673977..85674015,+!p1@ALX1!0.85!6.16!ALX1;;chr19:20188776..20188826,+!p1@ZNF90!0.84!16.69!ZNF90;;chr5:134369905..134369972,-!p1@PITX1!0.83!9.14!PITX1;;chr19:9811101..9811112,-!p3@ZNF812!0.83!5.76!ZNF812;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.83!5.76!HOXC5;;chr5:138609782..138609826,+!p5@MATR3!0.82!39.35!MATR3;;chr16:29818199..29818216,+!p11@MAZ!0.82!9.54!MAZ;;chr20:50179368..50179392,-!p2@NFATC2!0.82!7.35!NFATC2;;chr2:172949484..172949522,+!p1@DLX1!0.82!5.56!DLX1;;chr19:22034809..22034878,-!p2@ZNF43!0.81!20.27!ZNF43;;chr11:61520075..61520136,+!p1@C11orf9!0.81!12.12!C11orf9;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.54!FOXD1;;chr15:67418119..67418162,+!p5@SMAD3!0.81!6.16!SMAD3;;chr17:41623692..41623715,-!p1@ETV4!0.80!24.64!ETV4;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.15!ETV4;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.55!HOXB7;;chr12:2986206..2986258,-!p2@FOXM1!0.79!34.18!FOXM1;;chr20:42543441..42543497,+!p1@TOX2!0.79!25.04!TOX2;;chr8:106330656..106330684,+!p1@ZFPM2!0.79!14.51!ZFPM2;;chr6:10412392..10412409,-!p4@TFAP2A!0.79!5.96!TFAP2A;;chr12:2986275..2986363,-!p1@FOXM1!0.78!55.64!FOXM1;;chr11:65687222..65687240,+!p7@DRAP1!0.78!6.56!DRAP1;;chr5:176738887..176738934,-!p1@MXD3!0.77!35.77!MXD3;;chr5:321810..321877,+!p1@AHRR!0.76!16.29!AHRR;;chr12:66218413..66218418,+!p17@HMGA2!0.76!4.77!HMGA2;;chr11:65687158..65687216,+!p4@DRAP1!0.75!29.21!DRAP1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.75!23.05!TAL1;;chr2:185463247..185463263,+!p1@ZNF804A!0.75!8.74!ZNF804A;;chr17:46622229..46622257,-!p6@HOXB2!0.75!5.56!HOXB2;;chr19:22193731..22193751,-!p1@ZNF208!0.75!4.57!ZNF208;;chr4:109089095..109089144,-!p6@LEF1!0.75!4.57!LEF1;;chr12:77459306..77459365,-!p1@E2F7!0.74!62.40!E2F7;;chr15:67418047..67418093,+!p4@SMAD3!0.73!5.76!SMAD3;;chr1:158985469..158985489,+!p7@IFI16!0.73!5.37!IFI16;;chr7:26191809..26191890,+!p1@NFE2L3!0.72!23.65!NFE2L3;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.46!FOXD1;;chr17:41277372..41277418,-!p1@BRCA1!0.72!16.89!BRCA1;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.52!TWIST1;;chr14:35872962..35873025,-!p3@NFKBIA!0.71!11.53!NFKBIA;;chr2:200323414..200323455,-!p1@SATB2!0.71!9.54!SATB2;;chr19:24097706..24097731,+!p2@ZNF726!0.71!8.54!ZNF726;;chr12:27485762..27485776,+!p3@ARNTL2!0.70!11.92!ARNTL2;;chr20:42543506..42543549,+!p2@TOX2!0.70!10.53!TOX2;;chr4:81118647..81118666,+!p1@PRDM8!0.70!5.56!PRDM8;;chr11:120107344..120107351,+!p1@POU2F3!0.70!4.97!POU2F3;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.57!PRRX1;;chr11:65687362..65687436,+!p3@DRAP1!0.69!19.87!DRAP1;;chr15:96875657..96875760,+!p14@NR2F2!0.69!6.76!NR2F2;;chr14:75988771..75988826,+!p1@BATF!0.69!5.37!BATF;;chr6:31126291..31126399,+!p1@TCF19!0.68!40.94!TCF19;;chr11:65687243..65687276,+!p8@DRAP1!0.68!5.37!DRAP1;;chr11:34642612..34642646,+!p1@EHF!0.68!3.78!EHF;;chr7:27196267..27196311,-!p1@HOXA7!0.68!3.78!HOXA7;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.67!40.74!ZNF595;;chr12:27485785..27485816,+!p1@ARNTL2!0.67!29.01!ARNTL2;;chr2:60780753..60780800,-!p1@BCL11A!0.67!20.47!BCL11A;;chr6:20402102..20402152,+!p1@E2F3!0.67!17.29!E2F3;;chr8:23540441..23540466,-!p1@NKX3-1!0.67!7.95!NKX3-1;;chr17:46688334..46688385,-!p1@HOXB7!0.67!5.56!HOXB7;;chr10:35484804..35484902,+!p2@CREM!0.66!15.50!CREM;;chr7:19157043..19157088,-!p2@TWIST1!0.66!9.94!TWIST1;;chr1:45805872..45805900,+!p2@TOE1!0.66!9.54!TOE1;;chr12:54447599..54447630,+!p3@HOXC4!0.66!4.57!HOXC4;;chr12:115122318..115122331,-!p2@TBX3!0.66!3.58!TBX3;;chr16:29818160..29818188,+!p6@MAZ!0.65!18.68!MAZ;;chr2:239756739..239756755,+!p2@TWIST2!0.65!6.36!TWIST2;;chr11:6947720..6947812,+!p1@ZNF215!0.65!4.77!ZNF215;;chr17:41622765..41622821,-!p2@ETV4!0.64!5.56!ETV4;;chr1:120190786..120190915,-!p1@ZNF697!0.63!27.62!ZNF697;;chr19:22817119..22817145,+!p1@ZNF492!0.63!5.96!ZNF492;;chr10:44070016..44070069,-!p1@ZNF239!0.62!10.93!ZNF239;;chr1:59249645..59249656,-!p4@JUN!0.62!8.94!JUN;;chr11:32457103..32457123,-!p3@WT1!0.62!3.18!WT1;;chr12:54394309..54394336,+!p2@HOXC9!0.62!3.18!HOXC9;;chr15:67418177..67418204,+!p9@SMAD3!0.62!3.18!SMAD3;;chr3:157823517..157823562,-!p1@SHOX2!0.61!3.38!SHOX2;;chr12:7079780..7079791,-!p2@PHB2!0.60!18.48!PHB2;;chr19:23433144..23433204,-!p1@ZNF724P!0.60!15.90!ZNF724P;;chr19:12203100..12203132,+!p1@ZNF788!0.60!6.76!ZNF788;;chr6:28973090..28973094,-!p1@ZNF311!0.60!3.97!ZNF311;;chr2:172967353..172967365,-!p5@DLX2!0.60!2.98!DLX2;;chr9:4300050..4300118,-!p1@GLIS3!0.59!22.65!GLIS3;;chr2:60780607..60780624,-!p2@BCL11A!0.59!10.33!BCL11A;;chr1:170633262..170633285,+!p3@PRRX1!0.59!3.38!PRRX1;;chr2:172967621..172967637,-!p1@DLX2!0.58!8.74!DLX2;;chr12:3068466..3068495,+!p3@TEAD4!0.58!6.96!TEAD4;;chr17:46622205..46622218,-!p3@HOXB2!0.58!3.38!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!0.58!3.18!HOXB2;;chr2:172967276..172967296,-!p3@DLX2!0.58!2.78!DLX2;;chr6:10415484..10415508,-!p3@TFAP2A!0.58!2.78!TFAP2A;;chr11:57103327..57103372,-!p1@SSRP1!0.57!159.57!SSRP1;;chr6:34204973..34204990,+!p4@HMGA1!0.57!45.31!HMGA1;;chr5:133450365..133450444,+!p1@TCF7!0.57!14.90!TCF7;;chr2:101436564..101436647,+!p1@NPAS2!0.56!66.77!NPAS2;;chr11:65686952..65686975,+!p5@DRAP1!0.56!17.88!DRAP1;;chr8:106330696..106330719,+!p2@ZFPM2!0.56!3.58!ZFPM2;;chr20:32274179..32274213,-!p1@E2F1!0.55!20.87!E2F1;;chr12:3068501..3068515,+!p4@TEAD4!0.55!4.97!TEAD4;;chr12:54447637..54447659,+!p4@HOXC4!0.55!2.58!HOXC4;;chr7:27153454..27153469,-!p2@HOXA3!0.55!2.58!HOXA3;;chr19:22605136..22605154,-!p1@ZNF98!0.55!2.58!ZNF98;;chr4:188916918..188916942,+!p1@ZFP42!0.55!2.58!ZFP42;;chr6:34204672..34204692,+!p1@HMGA1!0.54!353.91!HMGA1;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.18!ETV4;;chr3:71114066..71114114,-!p1@FOXP1!0.53!63.19!FOXP1;;chr20:48809000..48809053,+!p12@CEBPB!0.53!3.38!CEBPB;;chr17:46806067..46806097,-!p1@HOXB13!0.53!2.38!HOXB13;;chr13:100634031..100634045,+!p1@ZIC2!0.53!2.38!ZIC2;;chr3:147111198..147111225,+!p4@ZIC1!0.53!2.38!ZIC1;;chr6:34210478..34210481,+!p8@HMGA1!0.53!2.38!HMGA1;;chr7:27169801..27169844,-!p2@HOXA4!0.53!2.38!HOXA4;;chr7:96634850..96634874,+!p3@DLX6!0.53!2.38!DLX6;;chr20:30193083..30193098,+!p1@ID1!0.52!246.41!ID1;;chr12:26277956..26277980,-!p1@BHLHE41!0.52!10.33!BHLHE41;;chr8:145669791..145669834,-!p1@TONSL!0.52!8.15!TONSL;;chr5:150284532..150284549,-!p1@ZNF300!0.52!5.56!ZNF300;;chr19:23299814..23299844,+!p1@ZNF730!0.52!2.98!ZNF730;;chr12:19592405..19592492,+!p2@AEBP2!0.51!24.64!AEBP2;;chr5:72743793..72743855,-!p4@FOXD1!0.51!2.78!FOXD1;;chr12:48298785..48298828,-!p1@VDR!0.50!14.90!VDR;;chr2:239756671..239756732,+!p1@TWIST2!0.50!8.74!TWIST2;;chr20:32274150..32274166,-!p2@E2F1!0.50!4.77!E2F1;;chr1:247171347..247171366,-!p2@ZNF695!0.50!4.57!ZNF695;;chr15:57511609..57511651,+!p2@TCF12!0.50!4.17!TCF12;;chr17:41623009..41623053,-!p4@ETV4!0.50!3.97!ETV4;;chr17:46687935..46687950,-!p3@HOXB7!0.50!2.19!HOXB7;;chr5:134369879..134369898,-!p2@PITX1!0.50!2.19!PITX1;;chr5:50679228..50679288,+!p1@ISL1!0.50!2.19!ISL1;;chr2:113999263..113999274,-!p13@PAX8!0.50!2.19!PAX8;;chr3:25470062..25470084,+!p4@RARB!0.50!2.19!RARB;;chr11:31832658..31832681,-!p1@PAX6!0.50!2.19!PAX6;;chr12:54393880..54393962,+!p1@HOXC9!0.50!2.19!HOXC9;;chr13:100634004..100634025,+!p2@ZIC2!0.50!2.19!ZIC2;;chr14:29236301..29236317,+!p5@FOXG1!0.50!2.19!FOXG1;;chr12:3068544..3068597,+!p1@TEAD4!0.49!16.49!TEAD4;;chr6:34205372..34205412,+!p5@HMGA1!0.49!13.71!HMGA1;;chr8:77593474..77593612,+!p1@ZFHX4!0.49!11.33!ZFHX4;;chr7:42276787..42276815,-!p1@GLI3!0.49!6.96!GLI3;;chr5:138647473..138647476,+!p6@MATR3!0.49!6.56!MATR3;;chr12:4829876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+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0000335,UBERON:0002532,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=FF:0100583,FF:0103765
 |fonse_cell_line_closure=FF:0100583,FF:0103765
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrous%2520histiocytoma%2520cell%2520line%253aGCT%2520TIB-223.CNhs11842.10711-109H9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrous%2520histiocytoma%2520cell%2520line%253aGCT%2520TIB-223.CNhs11842.10711-109H9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrous%2520histiocytoma%2520cell%2520line%253aGCT%2520TIB-223.CNhs11842.10711-109H9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/fibrous%2520histiocytoma%2520cell%2520line%253aGCT%2520TIB-223.CNhs11842.10711-109H9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/fibrous%2520histiocytoma%2520cell%2520line%253aGCT%2520TIB-223.CNhs11842.10711-109H9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10711-109H9
 |is_a=EFO:0002091;;FF:0000210;;FF:0103766
 |is_obsolete=
+|library_id=CNhs11842
+|library_id_phase_based=2:CNhs11842
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10711
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10711
 |name=fibrous histiocytoma cell line:GCT TIB-223
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11842,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=109
 |rna_catalog_number=
@@ Line 60: / Line 78: @@
 |rna_weight_ug=60.22016
 |sample_age=29
+|sample_category=cell lines
 |sample_cell_catalog=TIB-223
 |sample_cell_line=GCT TIB-223
@@ Line 81: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10711-109H9;search_select_hide=table117:FF:10711-109H9
 }}

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FF:10711-109H9: Difference between revisions

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Latest revision as of 15:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0