FF:10569-108B2: Difference between revisions

Latest revision as of 14:29, 3 June 2020

Name:	leiomyoma cell line:10964C
Species:	Human (Homo sapiens)
Library ID:	CNhs11722
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	uterus
dev stage	NA
sex	female
age	NA
cell type	smooth muscle cell
cell line	NA
company	Coriell
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.4

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004740

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11722		CAGE		DRX007915		DRR008787

Accession ID Hg19

Library id		BAM		CTSS
CNhs11722		DRZ000212		DRZ001597

Accession ID Hg38

Library id		BAM		CTSS
CNhs11722		DRZ011562		DRZ012947

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0821
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.409
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.325
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.212
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.319
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.246
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.301
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.319
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.654
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.00135
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.808
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.382
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.188
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.188
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.319
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.465
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.501
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.188
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.501
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11722

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.726
MA0003.1	MA0003.1	0.199
MA0004.1	MA0004.1	1
MA0006.1	MA0006.1	0.133
MA0007.1	MA0007.1	0.455
MA0009.1	MA0009.1	0.348
MA0014.1	MA0014.1	0.912
MA0017.1	MA0017.1	0.653
MA0018.2	MA0018.2	8.81881e-6
MA0019.1	MA0019.1	0.38
MA0024.1	MA0024.1	8.13293e-8
MA0025.1	MA0025.1	0.00129
MA0027.1	MA0027.1	0.893
MA0028.1	MA0028.1	0.078
MA0029.1	MA0029.1	0.956
MA0030.1	MA0030.1	0.0401
MA0031.1	MA0031.1	0.202
MA0035.2	MA0035.2	0.691
MA0038.1	MA0038.1	0.00244
MA0039.2	MA0039.2	0.164
MA0040.1	MA0040.1	0.566
MA0041.1	MA0041.1	0.474
MA0042.1	MA0042.1	0.844
MA0043.1	MA0043.1	4.31992e-6
MA0046.1	MA0046.1	0.421
MA0047.2	MA0047.2	0.264
MA0048.1	MA0048.1	0.752
MA0050.1	MA0050.1	0.00112
MA0051.1	MA0051.1	0.255
MA0052.1	MA0052.1	0.0905
MA0055.1	MA0055.1	0.317
MA0057.1	MA0057.1	0.0348
MA0058.1	MA0058.1	0.884
MA0059.1	MA0059.1	0.569
MA0060.1	MA0060.1	6.4992e-9
MA0061.1	MA0061.1	0.836
MA0062.2	MA0062.2	2.64567e-4
MA0065.2	MA0065.2	0.108
MA0066.1	MA0066.1	0.0538
MA0067.1	MA0067.1	0.0153
MA0068.1	MA0068.1	0.507
MA0069.1	MA0069.1	0.167
MA0070.1	MA0070.1	0.124
MA0071.1	MA0071.1	0.21
MA0072.1	MA0072.1	0.921
MA0073.1	MA0073.1	0.917
MA0074.1	MA0074.1	0.123
MA0076.1	MA0076.1	0.0509
MA0077.1	MA0077.1	0.201
MA0078.1	MA0078.1	0.474
MA0079.2	MA0079.2	0.72
MA0080.2	MA0080.2	1.73941e-7
MA0081.1	MA0081.1	0.0556
MA0083.1	MA0083.1	0.0498
MA0084.1	MA0084.1	0.893
MA0087.1	MA0087.1	0.963
MA0088.1	MA0088.1	0.897
MA0090.1	MA0090.1	0.293
MA0091.1	MA0091.1	0.492
MA0092.1	MA0092.1	0.481
MA0093.1	MA0093.1	0.964
MA0099.2	MA0099.2	0.446
MA0100.1	MA0100.1	0.071
MA0101.1	MA0101.1	0.0107
MA0102.2	MA0102.2	0.00384
MA0103.1	MA0103.1	0.736
MA0104.2	MA0104.2	0.326
MA0105.1	MA0105.1	0.0599
MA0106.1	MA0106.1	0.0717
MA0107.1	MA0107.1	0.0168
MA0108.2	MA0108.2	0.0386
MA0111.1	MA0111.1	0.527
MA0112.2	MA0112.2	0.00101
MA0113.1	MA0113.1	0.818
MA0114.1	MA0114.1	0.569
MA0115.1	MA0115.1	0.966
MA0116.1	MA0116.1	0.163
MA0117.1	MA0117.1	0.669
MA0119.1	MA0119.1	0.16
MA0122.1	MA0122.1	0.969
MA0124.1	MA0124.1	0.00908
MA0125.1	MA0125.1	0.484
MA0131.1	MA0131.1	0.299
MA0135.1	MA0135.1	0.401
MA0136.1	MA0136.1	5.53424e-10
MA0137.2	MA0137.2	0.0274
MA0138.2	MA0138.2	0.316
MA0139.1	MA0139.1	0.205
MA0140.1	MA0140.1	0.34
MA0141.1	MA0141.1	0.103
MA0142.1	MA0142.1	0.135
MA0143.1	MA0143.1	0.151
MA0144.1	MA0144.1	0.28
MA0145.1	MA0145.1	0.158
MA0146.1	MA0146.1	0.202
MA0147.1	MA0147.1	0.561
MA0148.1	MA0148.1	0.841
MA0149.1	MA0149.1	0.842
MA0150.1	MA0150.1	0.984
MA0152.1	MA0152.1	0.796
MA0153.1	MA0153.1	0.434
MA0154.1	MA0154.1	0.28
MA0155.1	MA0155.1	0.0852
MA0156.1	MA0156.1	9.8794e-7
MA0157.1	MA0157.1	0.584
MA0159.1	MA0159.1	0.0614
MA0160.1	MA0160.1	0.905
MA0162.1	MA0162.1	0.0649
MA0163.1	MA0163.1	0.00477
MA0164.1	MA0164.1	0.457
MA0258.1	MA0258.1	0.102
MA0259.1	MA0259.1	0.69

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11722

Novel motif	Logo	P-value
1	1	0.393
10	10	0.542
100	100	0.859
101	101	0.794
102	102	0.53
103	103	0.0713
104	104	0.615
105	105	0.233
106	106	0.114
107	107	0.268
108	108	0.213
109	109	0.14
11	11	0.122
110	110	0.292
111	111	0.796
112	112	0.0721
113	113	0.0294
114	114	0.0326
115	115	0.0115
116	116	0.062
117	117	0.465
118	118	0.506
119	119	0.727
12	12	0.531
120	120	0.107
121	121	0.228
122	122	0.463
123	123	0.0173
124	124	0.902
125	125	0.933
126	126	0.864
127	127	0.744
128	128	0.182
129	129	0.554
13	13	0.95
130	130	0.814
131	131	0.412
132	132	0.567
133	133	0.0564
134	134	0.351
135	135	0.976
136	136	0.29
137	137	0.298
138	138	0.934
139	139	0.104
14	14	0.72
140	140	0.877
141	141	0.436
142	142	0.947
143	143	0.0994
144	144	0.213
145	145	0.546
146	146	0.736
147	147	0.0509
148	148	0.108
149	149	0.00252
15	15	0.759
150	150	0.518
151	151	0.417
152	152	0.0346
153	153	0.873
154	154	0.654
155	155	0.313
156	156	0.887
157	157	0.882
158	158	0.0157
159	159	0.189
16	16	0.0134
160	160	0.208
161	161	0.618
162	162	0.428
163	163	0.752
164	164	0.125
165	165	0.917
166	166	0.108
167	167	0.752
168	168	0.639
169	169	0.0351
17	17	0.264
18	18	0.288
19	19	0.04
2	2	0.31
20	20	0.53
21	21	0.222
22	22	0.0573
23	23	0.349
24	24	0.429
25	25	0.495
26	26	0.356
27	27	0.0888
28	28	0.275
29	29	0.109
3	3	0.272
30	30	0.41
31	31	0.315
32	32	6.09292e-6
33	33	0.832
34	34	0.816
35	35	0.206
36	36	0.0853
37	37	0.0173
38	38	0.928
39	39	0.207
4	4	0.509
40	40	0.93
41	41	0.889
42	42	0.763
43	43	0.325
44	44	0.00459
45	45	0.55
46	46	0.09
47	47	0.534
48	48	0.511
49	49	0.827
5	5	0.815
50	50	0.794
51	51	0.362
52	52	0.455
53	53	0.154
54	54	0.386
55	55	0.318
56	56	0.523
57	57	0.876
58	58	0.813
59	59	0.0301
6	6	0.951
60	60	0.419
61	61	0.913
62	62	0.736
63	63	0.318
64	64	0.686
65	65	0.211
66	66	0.601
67	67	0.567
68	68	0.381
69	69	0.192
7	7	0.285
70	70	0.00759
71	71	0.173
72	72	0.872
73	73	0.0211
74	74	0.627
75	75	0.345
76	76	0.854
77	77	0.00662
78	78	0.591
79	79	0.00727
8	8	0.03
80	80	0.214
81	81	0.236
82	82	0.0404
83	83	0.353
84	84	0.449
85	85	0.101
86	86	0.461
87	87	0.0456
88	88	0.491
89	89	0.0154
9	9	0.435
90	90	0.991
91	91	0.93
92	92	0.0536
93	93	0.404
94	94	0.805
95	95	0.257
96	96	0.934
97	97	0.947
98	98	0.616
99	99	0.0329

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11722

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102694 leiomyoma cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)

DOID: Disease
4 (disease)
14566 (disease of cellular proliferation)
0060072 (benign neoplasm)
0060084 (cell type benign neoplasm)
127 (leiomyoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102694 (leiomyoma cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004740
+|accession_numbers=CAGE;DRX007915;DRR008787;DRZ000212;DRZ001597;DRZ011562;DRZ012947
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.91!80.36!HAND2;;chr2:19558373..19558392,-!p1@OSR1!1.69!126.52!OSR1;;chr3:141150883..141150961,+!p6@ZBTB38!1.67!45.61!ZBTB38;;chr7:27224842..27224872,-!p1@HOXA11!1.58!36.92!HOXA11;;chr11:65686802..65686818,+!p6@DRAP1!1.56!60.82!DRAP1;;chr7:27224795..27224840,-!p2@HOXA11!1.55!34.21!HOXA11;;chr11:46299539..46299620,+!p2@CREB3L1!1.54!55.39!CREB3L1;;chr19:13134772..13134822,+!p2@NFIX!1.54!49.41!NFIX;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!144.98!CREB3L1;;chr4:174450089..174450153,-!p2@HAND2!1.38!22.81!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!22.81!ZBED1;;chr2:176969228..176969260,+!p1@HOXD11!1.37!22.26!HOXD11;;chr3:25470156..25470227,+!p2@RARB!1.34!20.63!RARB;;chr11:65687362..65687436,+!p3@DRAP1!1.30!84.16!DRAP1;;chr3:141151009..141151033,+!p10@ZBTB38!1.29!18.46!ZBTB38;;chr15:96876966..96877017,+!p12@NR2F2!1.25!23.89!NR2F2;;chr19:13135582..13135600,+!p3@NFIX!1.22!15.75!NFIX;;chr6:34204921..34204939,+!p3@HMGA1!1.16!402.36!HMGA1;;chr4:174451350..174451363,-!p3@HAND2!1.16!13.57!HAND2;;chr10:119303078..119303169,+!p2@EMX2!1.07!10.86!EMX2;;chr6:19837592..19837621,+!p1@ID4!1.04!61.90!ID4;;chr15:42749722..42749739,-!p2@ZFP106!1.04!17.92!ZFP106;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.81!DRAP1;;chr11:46299443..46299459,+!p4@CREB3L1!1.03!9.77!CREB3L1;;chr11:46333934..46333963,+!p5@CREB3L1!1.03!9.77!CREB3L1;;chr7:27239703..27239715,-!p1@HOXA13!1.03!9.77!HOXA13;;chr2:239756671..239756732,+!p1@TWIST2!1.01!29.86!TWIST2;;chr2:176973498..176973524,+!p1@HOXD10!1.01!9.23!HOXD10;;chr15:96869114..96869160,+!p11@NR2F2!1.00!12.49!NR2F2;;chr17:59477233..59477263,+!p1@TBX2!0.99!27.69!TBX2;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.20!TWIST2;;chr19:13135386..13135435,+!p4@NFIX!0.99!8.69!NFIX;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.69!GATA4;;chr19:13136130..13136165,+!p6@NFIX!0.96!10.86!NFIX;;chr9:77112244..77112262,+!p1@RORB!0.96!9.23!RORB;;chr6:34205372..34205412,+!p5@HMGA1!0.95!41.27!HMGA1;;chr11:65687243..65687276,+!p8@DRAP1!0.95!10.86!DRAP1;;chr4:81118647..81118666,+!p1@PRDM8!0.94!10.32!PRDM8;;chr15:37390850..37390909,-!p3@MEIS2!0.93!15.20!MEIS2;;chr10:119302232..119302265,+!p1@EMX2!0.93!7.60!EMX2;;chr2:176969179..176969226,+!p2@HOXD11!0.93!7.60!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!0.93!7.60!FOXL2;;chr18:19749541..19749557,+!p1@GATA6!0.91!23.35!GATA6;;chr3:138665969..138665993,-!p2@FOXL2!0.91!7.06!FOXL2;;chr6:28321971..28321995,-!p1@ZNF323!0.91!7.06!ZNF323;;chr7:27213893..27213954,-!p1@HOXA10!0.91!7.06!HOXA10;;chr9:35732647..35732678,+!p2@CREB3!0.90!40.18!CREB3;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.24!FOSL1;;chr19:13136241..13136258,+!p7@NFIX!0.89!9.23!NFIX;;chr15:37391588..37391604,-!p11@MEIS2!0.88!8.69!MEIS2;;chr11:65687158..65687216,+!p4@DRAP1!0.87!38.55!DRAP1;;chr5:92918919..92918942,+!p1@NR2F1!0.87!29.86!NR2F1;;chr15:96874145..96874166,+!p7@NR2F2!0.86!12.49!NR2F2;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.97!SALL1;;chr10:119302645..119302712,+!p3@EMX2!0.84!5.97!EMX2;;chr2:176981499..176981522,+!p2@HOXD10!0.84!5.97!HOXD10;;chr3:25469815..25469866,+!p3@RARB!0.84!5.97!RARB;;chr17:3571863..3571881,-!p1@TAX1BP3!0.83!437.11!TAX1BP3;;chr11:65687222..65687240,+!p7@DRAP1!0.83!7.60!DRAP1;;chr3:12330560..12330579,+!p1@PPARG!0.82!6.52!PPARG;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.66!TWIST1;;chr15:96869255..96869291,+!p6@NR2F2!0.81!10.32!NR2F2;;chr3:69811858..69811881,+!p5@MITF!0.81!5.43!MITF;;chr9:128510454..128510469,+!p3@PBX3!0.80!7.06!PBX3;;chr11:65667846..65667868,-!p1@FOSL1!0.79!149.87!FOSL1;;chr17:59477275..59477286,+!p3@TBX2!0.79!7.06!TBX2;;chr6:152128810..152128827,+!p2@ESR1!0.77!4.89!ESR1;;chr2:176972000..176972025,+!p4@HOXD11!0.77!4.89!HOXD11;;chr3:141151044..141151053,+!p51@ZBTB38!0.77!4.89!ZBTB38;;chr1:170632285..170632309,+!p1@PRRX1!0.76!5.43!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.74!13.57!TWIST1;;chr15:96869222..96869251,+!p18@NR2F2!0.74!5.43!NR2F2;;chr17:46126136..46126152,+!p1@NFE2L1!0.73!254.67!NFE2L1;;chr15:37392724..37392757,-!p1@MEIS2!0.73!22.26!MEIS2;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.40!NR2F2;;chrX:48900782..48900793,-!p3@TFE3!0.73!8.69!TFE3;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!7.06!ZBTB38;;chr18:19749386..19749404,+!p2@GATA6!0.73!6.52!GATA6;;chr2:177001290..177001315,+!p1@HOXD3!0.73!4.34!HOXD3;;chr3:69811882..69811898,+!p6@MITF!0.73!4.34!MITF;;chr3:69811899..69811913,+!p11@MITF!0.73!4.34!MITF;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.73!4.34!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.73!4.34!HMGA2;;chr9:35732592..35732640,+!p1@CREB3!0.72!62.44!CREB3;;chr12:53614115..53614154,-!p1@RARG!0.72!25.52!RARG;;chr15:96874927..96874938,+!p8@NR2F2!0.72!9.77!NR2F2;;chr19:13134457..13134462,+!p5@NFIX!0.72!8.14!NFIX;;chr17:7492684..7492778,-!p2@SOX15!0.70!9.23!SOX15;;chr17:46127997..46128015,+!p5@NFE2L1!0.68!5.43!NFE2L1;;chr19:50431999..50432026,+!p4@ATF5!0.68!5.43!ATF5;;chr6:28321909..28321965,-!p3@ZNF323!0.68!3.80!ZNF323;;chr2:19553530..19553547,-!p3@OSR1!0.68!3.80!OSR1;;chr4:111558135..111558198,-!p2@PITX2!0.68!3.80!PITX2;;chr4:26323764..26323821,+!p15@RBPJ!0.68!3.80!RBPJ;;chr15:96877047..96877056,+!p39@NR2F2!0.68!3.80!NR2F2;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.80!ZNF668;;chr17:46128217..46128243,+!p11@NFE2L1!0.68!3.80!NFE2L1;;chr5:72744445..72744466,-!p2@FOXD1!0.67!6.52!FOXD1;;chr11:8102846..8102892,+!p1@TUB!0.67!5.43!TUB;;chr17:38256799..38256815,-!p3@NR1D1!0.66!7.06!NR1D1;;chr11:65686952..65686975,+!p5@DRAP1!0.65!22.26!DRAP1;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.92!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.64!16.83!ZBTB20;;chr16:86600426..86600441,+!p1@FOXC2!0.64!9.23!FOXC2;;chr19:47922750..47922795,-!p1@MEIS3!0.64!5.97!MEIS3;;chr15:37390374..37390422,-!p9@MEIS2!0.64!4.34!MEIS2;;chr15:37392094..37392116,-!p6@MEIS2!0.64!4.34!MEIS2;;chr1:170632959..170632987,+!p4@PRRX1!0.64!3.80!PRRX1;;chr15:96874216..96874236,+!p13@NR2F2!0.63!5.43!NR2F2;;chr15:37392703..37392717,-!p8@MEIS2!0.63!4.89!MEIS2;;chr11:707063..707088,-!p4@DEAF1!0.63!4.34!DEAF1;;chr11:46332679..46332695,+!p12@CREB3L1!0.63!3.26!CREB3L1;;chr12:66218923..66218934,+!p14@HMGA2!0.63!3.26!HMGA2;;chr16:51185318..51185348,-!p2@SALL1!0.63!3.26!SALL1;;chr17:59477403..59477414,+!p4@TBX2!0.63!3.26!TBX2;;chr2:176994408..176994492,+!p1@HOXD8!0.63!3.26!HOXD8;;chr5:139492456..139492489,+!p7@PURA!0.63!3.26!PURA;;chr7:27239740..27239759,-!p2@HOXA13!0.63!3.26!HOXA13;;chr17:38256822..38256851,-!p1@NR1D1!0.62!29.86!NR1D1;;chr3:12329397..12329433,+!p2@PPARG!0.62!8.14!PPARG;;chr2:200322654..200322707,-!p2@SATB2!0.62!4.89!SATB2;;chr3:25469724..25469773,+!p1@RARB!0.62!4.89!RARB;;chr5:72743793..72743855,-!p4@FOXD1!0.62!3.80!FOXD1;;chr9:35732561..35732587,+!p3@CREB3!0.61!15.20!CREB3;;chr14:24837368..24837401,+!p1@NFATC4!0.61!8.14!NFATC4;;chr9:128509663..128509715,+!p1@PBX3!0.60!11.95!PBX3;;chr15:37390482..37390572,-!p7@MEIS2!0.60!4.34!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!0.60!3.80!MEIS2;;chr5:92919100..92919135,+!p3@NR2F1!0.60!3.80!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!0.59!31.49!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.59!5.97!NR2F2;;chr20:39946400..39946423,-!p3@ZHX3!0.59!5.97!ZHX3;;chr11:706938..707008,-!p3@DEAF1!0.59!3.80!DEAF1;;chr15:37392534..37392562,-!p10@MEIS2!0.59!3.26!MEIS2;;chr5:92918956..92918969,+!p4@NR2F1!0.59!3.26!NR2F1;;chr1:164528410..164528428,+!p1@PBX1!0.58!25.52!PBX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.58!11.95!BHLHE41;;chr10:35484053..35484076,+!p1@CREM!0.58!8.14!CREM;;chr17:59477197..59477212,+!p2@TBX2!0.58!5.43!TBX2;;chr11:46299186..46299195,+!p3@CREB3L1!0.58!3.26!CREB3L1;;chr1:151032860..151032918,+!p1@MLLT11!0.57!39.64!MLLT11;;chr15:96873984..96873999,+!p3@NR2F2!0.57!24.43!NR2F2;;chr22:41735880..41735903,+!p5@ZC3H7B!0.57!3.26!ZC3H7B;;chr1:164528687..164528711,+!p6@PBX1!0.57!3.26!PBX1;;chr1:170633262..170633285,+!p3@PRRX1!0.57!3.26!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.57!2.71!PRRX1;;chr15:96869165..96869183,+!p20@NR2F2!0.57!2.71!NR2F2;;chr16:67198633..67198671,+!p1@HSF4!0.57!2.71!HSF4;;chr19:13135566..13135577,+!p9@NFIX!0.57!2.71!NFIX;;chr19:13135731..13135787,+!p10@NFIX!0.57!2.71!NFIX;;chr19:13136057..13136085,+!p11@NFIX!0.57!2.71!NFIX;;chr6:152126830..152126847,+!p4@ESR1!0.57!2.71!ESR1;;chr7:100076673..100076682,-!p7@TSC22D4!0.57!2.71!TSC22D4;;chr7:27196267..27196311,-!p1@HOXA7!0.57!2.71!HOXA7;;chr10:119307702..119307723,+!p10@EMX2!0.57!2.71!EMX2;;chr11:46333883..46333900,+!p8@CREB3L1!0.57!2.71!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!0.57!2.71!HOXC9;;chr12:54394309..54394336,+!p2@HOXC9!0.57!2.71!HOXC9;;chr12:8186270..8186292,+!p3@FOXJ2!0.57!2.71!FOXJ2;;chr22:41763452..41763466,+!p2@TEF!0.57!2.71!TEF;;chr2:85981073..85981091,+!p5@ATOH8!0.57!2.71!ATOH8;;chr3:141150971..141150978,+!p60@ZBTB38!0.57!2.71!ZBTB38;;chr4:26324474..26324501,+!p16@RBPJ!0.57!2.71!RBPJ;;chr12:124873357..124873401,-!p1@NCOR2!0.56!38.01!NCOR2;;chr14:21566731..21566836,-!p1@ZNF219!0.56!34.75!ZNF219;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.52!ZNF503;;chr5:92919068..92919082,+!p5@NR2F1!0.56!3.26!NR2F1;;chr15:37392593..37392607,-!p13@MEIS2!0.56!3.26!MEIS2;;chr9:2158443..2158481,+!p2@SMARCA2!0.55!8.69!SMARCA2;;chr12:66218255..66218304,+!p3@HMGA2!0.55!8.14!HMGA2;;chr13:45151403..45151433,-!p5@TSC22D1!0.55!6.52!TSC22D1;;chr13:45151259..45151326,-!p2@TSC22D1!0.54!18.46!TSC22D1;;chr12:57504975..57505019,-!p2@STAT6!0.54!12.49!STAT6;;chr1:164528384..164528409,+!p3@PBX1!0.54!9.23!PBX1;;chr12:26277929..26277955,-!p3@BHLHE41!0.54!3.80!BHLHE41;;chr9:35732514..35732530,+!p5@CREB3!0.54!3.80!CREB3;;chr7:106809470..106809481,+!p2@HBP1!0.54!3.80!HBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.54!2.71!SHOX2;;chr19:13106214..13106382,+!p1@NFIX!0.53!71.13!NFIX;;chr17:3571887..3571918,-!p2@TAX1BP3!0.53!34.21!TAX1BP3;;chr3:178789522..178789564,-!p2@ZMAT3!0.53!22.26!ZMAT3;;chrX:66763856..66763896,+!p1@AR!0.53!3.80!AR;;chr12:66218836..66218888,+!p1@HMGA2!0.52!27.69!HMGA2;;chr2:66662281..66662308,+!p1@MEIS1!0.52!9.77!MEIS1;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.34!ATOH8;;chr3:128206762..128206781,-!p2@GATA2!0.51!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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0005795,UBERON:0010316
 |fonse_cell_line=FF:0102694
 |fonse_cell_line_closure=FF:0102694
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a10964C.CNhs11722.10569-108B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10569-108B2
 |is_a=EFO:0002091;;FF:0000210;;FF:0102694
 |is_obsolete=
+|library_id=CNhs11722
+|library_id_phase_based=2:CNhs11722
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10569
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10569
 |name=leiomyoma cell line:10964C
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11722,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=108
 |rna_catalog_number=
@@ Line 60: / Line 78: @@
 |rna_weight_ug=37.0624
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 81: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10569-108B2;search_select_hide=table117:FF:10569-108B2
 }}

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FF:10569-108B2: Difference between revisions

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Latest revision as of 14:29, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0