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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005975
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005975
|accession_numbers=CAGE;DRX008346;DRR009218;DRZ000643;DRZ002028;DRZ011993;DRZ013378
|accession_numbers_RNASeq=sRNA-Seq;DRX037251;DRR041617;DRZ007259
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0002570
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000096
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.35!225.32!HIF3A;;chr2:119605214..119605230,-!p1@EN1!2.26!182.40!EN1;;chr11:46299199..46299233,+!p1@CREB3L1!2.04!525.75!CREB3L1;;chr11:47279504..47279563,+!p1@NR1H3!1.98!207.44!NR1H3;;chr3:126076242..126076257,-!p1@KLF15!1.92!100.14!KLF15;;chr2:239756671..239756732,+!p1@TWIST2!1.89!236.05!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!1.89!203.86!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.86!71.53!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.83!75.11!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.82!171.68!OSR1;;chr17:1959369..1959388,+!p2@HIC1!1.74!135.91!HIC1;;chr2:239756739..239756755,+!p2@TWIST2!1.74!89.41!TWIST2;;chr20:62680984..62680999,-!p1@SOX18!1.68!60.80!SOX18;;chr8:99956662..99956684,+!p1@OSR2!1.66!67.95!OSR2;;chr8:48650715..48650735,-!p1@CEBPD!1.65!5221.78!CEBPD;;chr11:65687362..65687436,+!p3@DRAP1!1.65!189.56!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.62!67.95!CREB3L1;;chr11:47279248..47279264,+!p3@NR1H3!1.62!46.50!NR1H3;;chr2:85980951..85981004,+!p1@ATOH8!1.59!60.80!ATOH8;;chr19:58987786..58987805,+!p3@ZNF446!1.59!53.65!ZNF446;;chr12:54402745..54402788,+!p1@HOXC8!1.57!35.77!HOXC8;;chr2:176994408..176994492,+!p1@HOXD8!1.57!35.77!HOXD8;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.54!35.77!GLIS1;;chr12:53614115..53614154,-!p1@RARG!1.53!168.10!RARG;;chr17:1958388..1958404,+!p1@HIC1!1.52!196.71!HIC1;;chr7:19157043..19157088,-!p2@TWIST1!1.52!78.68!TWIST1;;chr7:150946015..150946070,-!p3@SMARCD3!1.52!67.95!SMARCD3;;chr19:47523058..47523114,+!p1@NPAS1!1.52!32.19!NPAS1;;chr7:150974206..150974255,-!p1@SMARCD3!1.50!182.40!SMARCD3;;chr11:113930425..113930471,+!p1@ZBTB16!1.49!42.92!ZBTB16;;chr17:17726907..17726958,-!p2@SREBF1!1.47!168.10!SREBF1;;chr17:61919985..61920012,-!p3@SMARCD2!1.47!67.95!SMARCD2;;chr11:113930401..113930422,+!p3@ZBTB16!1.47!28.61!ZBTB16;;chr12:54410948..54410992,+!p3@HOXC5!1.47!28.61!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.46!35.77!PRRX2;;chr3:126076264..126076305,-!p2@KLF15!1.43!35.77!KLF15;;chr19:50432453..50432468,+!p1@ATF5!1.42!1344.79!ATF5;;chr19:7580944..7581031,+!p1@ZNF358!1.42!733.20!ZNF358;;chr8:49833948..49833973,-!p2@SNAI2!1.42!153.79!SNAI2;;chr17:46682321..46682362,-!p1@HOXB6!1.42!25.04!HOXB6;;chr2:119604456..119604501,-!p2@EN1!1.42!25.04!EN1;;chr12:54393880..54393962,+!p1@HOXC9!1.42!25.04!HOXC9;;chr19:7584815..7584829,+!p2@ZNF358!1.40!32.19!ZNF358;;chr17:59477275..59477286,+!p3@TBX2!1.40!32.19!TBX2;;chr17:59477233..59477263,+!p1@TBX2!1.39!71.53!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.37!96.57!NR2F1;;chr19:45260775..45260838,+!p5@BCL3!1.36!28.61!BCL3;;chr6:34204672..34204692,+!p1@HMGA1!1.35!2317.61!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!1.35!92.99!TOX2;;chr9:132427883..132427951,+!p2@PRRX2!1.35!21.46!PRRX2;;chr19:13134457..13134462,+!p5@NFIX!1.33!35.77!NFIX;;chr8:49833978..49833996,-!p1@SNAI2!1.32!393.42!SNAI2;;chr19:47922750..47922795,-!p1@MEIS3!1.32!32.19!MEIS3;;chr19:56154958..56155027,+!p1@ZNF581!1.31!615.17!ZNF581;;chr19:44037546..44037594,+!p1@ZNF575!1.31!39.34!ZNF575;;chr8:37553292..37553317,+!p1@ZNF703!1.30!432.76!ZNF703;;chr19:36134528..36134563,+!p1@ETV2!1.30!53.65!ETV2;;chr19:46272106..46272115,-!p3@SIX5!1.30!50.07!SIX5;;chr9:77112244..77112262,+!p1@RORB!1.30!21.46!RORB;;chr17:3571887..3571918,-!p2@TAX1BP3!1.28!196.71!TAX1BP3;;chr14:95236440..95236465,-!p1@GSC!1.28!17.88!GSC;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.28!17.88!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!1.28!17.88!HOXC6;;chr2:85981008..85981025,+!p7@ATOH8!1.28!17.88!ATOH8;;chr14:75894714..75894733,+!p1@JDP2!1.27!486.41!JDP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.27!457.80!TSC22D3;;chr2:85981222..85981259,+!p2@ATOH8!1.27!28.61!ATOH8;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!1.26!958.52!PCBP4;;chr17:61920023..61920110,-!p1@SMARCD2!1.26!236.05!SMARCD2;;chr4:2263809..2263854,-!p1@MXD4!1.25!622.32!MXD4;;chr17:46622070..46622109,-!p1@HOXB2!1.23!35.77!HOXB2;;chr7:100076723..100076737,-!p3@TSC22D4!1.23!25.04!TSC22D4;;chr7:44143925..44143970,+!p1@AEBP1!1.22!343.35!AEBP1;;chr1:23885981..23886002,-!p1@ID3!1.21!2621.62!ID3;;chr14:24837368..24837401,+!p1@NFATC4!1.21!35.77!NFATC4;;chr12:54772960..54773015,-!p3@ZNF385A!1.20!71.53!ZNF385A;;chr2:174830540..174830563,-!p8@SP3!1.20!21.46!SP3;;chr20:48807351..48807384,+!p1@CEBPB!1.19!1462.81!CEBPB;;chr7:149470641..149470694,-!p1@ZNF467!1.19!64.38!ZNF467;;chr17:46621937..46621966,-!p2@HOXB2!1.19!39.34!HOXB2;;chr1:221053049..221053075,+!p3@HLX!1.19!25.04!HLX;;chr6:34204642..34204664,+!p2@HMGA1!1.18!1859.81!HMGA1;;chr17:40440481..40440550,+!p1@STAT5A!1.18!100.14!STAT5A;;chr16:3185125..3185173,+!p1@ZNF213!1.18!35.77!ZNF213;;chr16:8962202..8962222,-!p3@CARHSP1!1.18!25.04!CARHSP1;;chr7:27192185..27192209,-!p1@HOXA3!1.18!14.31!HOXA3;;chr8:72756194..72756208,-!p9@MSC!1.18!14.31!MSC;;chr12:54378923..54378966,+!p1@HOXC10!1.18!14.31!HOXC10;;chr20:30433396..30433414,-!p1@FOXS1!1.18!14.31!FOXS1;;chr2:177001366..177001379,+!p4@HOXD3!1.18!14.31!HOXD3;;chr2:85981107..85981120,+!p3@ATOH8!1.18!14.31!ATOH8;;chr3:147111231..147111281,+!p3@ZIC1!1.18!14.31!ZIC1;;chr1:149858461..149858479,+!p1@BOLA1!1.17!5232.51!BOLA1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!1.17!135.91!GLIS2;;chr8:72756667..72756736,-!p2@MSC!1.17!21.46!MSC;;chr6:31515337..31515420,+!p1@NFKBIL1!1.16!239.63!NFKBIL1;;chr14:21566731..21566836,-!p1@ZNF219!1.16!143.06!ZNF219;;chr8:48650697..48650708,-!p2@CEBPD!1.16!100.14!CEBPD;;chr7:149470540..149470596,-!p2@ZNF467!1.16!17.88!ZNF467;;chr21:47063625..47063658,+!p1@PCBP3!1.15!57.23!PCBP3;;chr19:56111680..56111716,+!p1@ZNF524!1.15!50.07!ZNF524;;chr19:3359257..3359362,+!p3@NFIC!1.15!39.34!NFIC;;chr10:77161133..77161176,-!p3@ZNF503!1.15!28.61!ZNF503;;chr6:1389789..1389821,+!p1@FOXF2!1.15!17.88!FOXF2;;chr20:48807875..48807982,+!p2@CEBPB!1.14!275.40!CEBPB;;chr1:8483878..8483907,-!p4@RERE!1.14!50.07!RERE;;chr19:18392236..18392248,-!p2@JUND!1.13!82.26!JUND;;chr3:12330560..12330579,+!p1@PPARG!1.13!14.31!PPARG;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.31!PRRX1;;chr20:30193083..30193098,+!p1@ID1!1.12!969.25!ID1;;chr10:77161504..77161530,-!p1@ZNF503!1.12!160.95!ZNF503;;chr12:53625966..53626012,-!p2@RARG!1.12!32.19!RARG;;chr19:13134772..13134822,+!p2@NFIX!1.12!17.88!NFIX;;chr19:13106214..13106382,+!p1@NFIX!1.11!275.40!NFIX;;chr16:30583017..30583064,-!p1@ZNF688!1.11!60.80!ZNF688;;chr15:42749722..42749739,-!p2@ZFP106!1.11!21.46!ZFP106;;chr6:85474299..85474324,-!p1@TBX18!1.11!21.46!TBX18;;chr17:3571863..3571881,-!p1@TAX1BP3!1.10!829.76!TAX1BP3;;chr19:56152361..56152434,+!p1@ZNF580!1.10!304.01!ZNF580;;chr19:36545291..36545314,-!p2@THAP8!1.10!28.61!THAP8;;chr13:41240737..41240787,-!p1@FOXO1!1.09!135.91!FOXO1;;chr3:187463179..187463201,-!p2@BCL6!1.09!46.50!BCL6;;chr14:61116183..61116208,-!p1@SIX1!1.09!42.92!SIX1;;chr19:18392250..18392260,-!p4@JUND!1.09!35.77!JUND;;chr17:38465413..38465438,+!p5@RARA!1.09!17.88!RARA;;chr19:46272462..46272562,-!p1@SIX5!1.08!46.50!SIX5;;chr8:145159376..145159407,+!p1@MAF1!1.07!447.07!MAF1;;chr15:96874012..96874042,+!p2@NR2F2!1.07!96.57!NR2F2;;chr1:204042233..204042249,+!p1@SOX13!1.07!67.95!SOX13;;chr9:130954041..130954121,-!p2@CIZ1!1.07!46.50!CIZ1;;chr19:45261550..45261641,+!p6@BCL3!1.07!17.88!BCL3;;chr17:17723746..17723766,-!p5@SREBF1!1.07!17.88!SREBF1;;chr19:17356189..17356221,-!p2@NR2F6!1.07!17.88!NR2F6;;chr16:54320127..54320148,-!p6@IRX3!1.07!10.73!IRX3;;chr16:67198633..67198671,+!p1@HSF4!1.07!10.73!HSF4;;chr17:59477403..59477414,+!p4@TBX2!1.07!10.73!TBX2;;chr1:170632137..170632172,+!p10@PRRX1!1.07!10.73!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!1.07!10.73!PRRX1;;chr11:47279491..47279502,+!p6@NR1H3!1.07!10.73!NR1H3;;chr12:54394309..54394336,+!p2@HOXC9!1.07!10.73!HOXC9;;chr7:73038839..73038862,-!p1@MLXIPL!1.07!10.73!MLXIPL;;chr8:25902876..25902936,-!p1@EBF2!1.07!10.73!EBF2;;chr9:1050331..1050363,+!p1@DMRT2!1.07!10.73!DMRT2;;chr21:47063590..47063597,+!p2@PCBP3!1.07!10.73!PCBP3;;chr2:176987441..176987454,+!p1@HOXD9!1.07!10.73!HOXD9;;chr2:85981271..85981289,+!p9@ATOH8!1.07!10.73!ATOH8;;chr3:42695180..42695201,+!p2@ZBTB47!1.07!10.73!ZBTB47;;chr17:38498594..38498661,+!p2@RARA!1.06!35.77!RARA;;chr9:117150254..117150271,-!p1@AKNA!1.06!28.61!AKNA;;chr1:170633348..170633399,+!p2@PRRX1!1.06!14.31!PRRX1;;chr8:145159415..145159438,+!p2@MAF1!1.05!200.29!MAF1;;chr16:29816957..29817031,+!p7@MAZ!1.05!46.50!MAZ;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.31!HOXB7;;chr8:128748308..128748324,+!p2@MYC!1.04!278.97!MYC;;chr16:54320158..54320200,-!p5@IRX3!1.04!14.31!IRX3;;chr3:157823517..157823562,-!p1@SHOX2!1.04!10.73!SHOX2;;chr7:44143978..44143989,+!p2@AEBP1!1.03!17.88!AEBP1;;chr8:72756267..72756296,-!p4@MSC!1.03!14.31!MSC;;chr11:64073022..64073056,+!p1@ESRRA!1.02!114.45!ESRRA;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!1.02!46.50!GLIS2;;chr16:29819446..29819471,+!p9@MAZ!1.02!28.61!MAZ;;chr2:145282041..145282092,-!p8@ZEB2!1.02!14.31!ZEB2;;chr11:46299186..46299195,+!p3@CREB3L1!1.02!10.73!CREB3L1;;chr19:3366570..3366619,+!p1@NFIC!1.01!300.43!NFIC;;chr19:3359591..3359667,+!p2@NFIC!1.01!107.30!NFIC;;chr7:148892629..148892651,+!p2@ZNF282!1.01!57.23!ZNF282;;chr11:65687158..65687216,+!p4@DRAP1!1.01!53.65!DRAP1;;chrX:106960180..106960197,-!p2@TSC22D3!1.01!35.77!TSC22D3;;chr9:73029219..73029289,-!p2@KLF9!1.01!28.61!KLF9;;chr19:56152332..56152347,+!p4@ZNF580!1.01!21.46!ZNF580;;chr15:96874145..96874166,+!p7@NR2F2!1.01!17.88!NR2F2;;chr17:46675420..46675465,-!p3@HOXB6!1.01!10.73!HOXB6;;chr15:96873984..96873999,+!p3@NR2F2!1.00!67.95!NR2F2;;chr11:62521614..62521646,-!p1@ZBTB3!1.00!46.50!ZBTB3;;chr17:61920116..61920131,-!p5@SMARCD2!1.00!17.88!SMARCD2;;chr19:58987711..58987729,+!p2@ZNF446!1.00!14.31!ZNF446;;chr19:56092195..56092248,-!p1@ZNF579!0.99!96.57!ZNF579;;chr4:2263861..2263883,-!p2@MXD4!0.99!53.65!MXD4;;chr20:42543506..42543549,+!p2@TOX2!0.99!21.46!TOX2;;chr19:49140572..49140594,-!p2@DBP!0.99!14.31!DBP;;chr7:100076765..100076861,-!p1@TSC22D4!0.98!304.01!TSC22D4;;chr5:92918894..92918912,+!p2@NR2F1!0.98!28.61!NR2F1;;chr2:747304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|expression_enrichment_score=chr19:46801639..46801699,+!p1@HIF3A!2.35!225.32!HIF3A;;chr2:119605214..119605230,-!p1@EN1!2.26!182.40!EN1;;chr11:46299199..46299233,+!p1@CREB3L1!2.04!525.75!CREB3L1;;chr11:47279504..47279563,+!p1@NR1H3!1.98!207.44!NR1H3;;chr3:126076242..126076257,-!p1@KLF15!1.92!100.14!KLF15;;chr2:239756671..239756732,+!p1@TWIST2!1.89!236.05!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!1.89!203.86!TWIST1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.86!71.53!HOXC5;;chr1:170632285..170632309,+!p1@PRRX1!1.83!75.11!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.82!171.68!OSR1;;chr17:1959369..1959388,+!p2@HIC1!1.74!135.91!HIC1;;chr2:239756739..239756755,+!p2@TWIST2!1.74!89.41!TWIST2;;chr20:62680984..62680999,-!p1@SOX18!1.68!60.80!SOX18;;chr8:99956662..99956684,+!p1@OSR2!1.66!67.95!OSR2;;chr8:48650715..48650735,-!p1@CEBPD!1.65!5221.78!CEBPD;;chr11:65687362..65687436,+!p3@DRAP1!1.65!189.56!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.62!67.95!CREB3L1;;chr11:47279248..47279264,+!p3@NR1H3!1.62!46.50!NR1H3;;chr2:85980951..85981004,+!p1@ATOH8!1.59!60.80!ATOH8;;chr19:58987786..58987805,+!p3@ZNF446!1.59!53.65!ZNF446;;chr12:54402745..54402788,+!p1@HOXC8!1.57!35.77!HOXC8;;chr2:176994408..176994492,+!p1@HOXD8!1.57!35.77!HOXD8;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.54!35.77!GLIS1;;chr12:53614115..53614154,-!p1@RARG!1.53!168.10!RARG;;chr17:1958388..1958404,+!p1@HIC1!1.52!196.71!HIC1;;chr7:19157043..19157088,-!p2@TWIST1!1.52!78.68!TWIST1;;chr7:150946015..150946070,-!p3@SMARCD3!1.52!67.95!SMARCD3;;chr19:47523058..47523114,+!p1@NPAS1!1.52!32.19!NPAS1;;chr7:150974206..150974255,-!p1@SMARCD3!1.50!182.40!SMARCD3;;chr11:113930425..113930471,+!p1@ZBTB16!1.49!42.92!ZBTB16;;chr17:17726907..17726958,-!p2@SREBF1!1.47!168.10!SREBF1;;chr17:61919985..61920012,-!p3@SMARCD2!1.47!67.95!SMARCD2;;chr11:113930401..113930422,+!p3@ZBTB16!1.47!28.61!ZBTB16;;chr12:54410948..54410992,+!p3@HOXC5!1.47!28.61!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.46!35.77!PRRX2;;chr3:126076264..126076305,-!p2@KLF15!1.43!35.77!KLF15;;chr19:50432453..50432468,+!p1@ATF5!1.42!1344.79!ATF5;;chr19:7580944..7581031,+!p1@ZNF358!1.42!733.20!ZNF358;;chr8:49833948..49833973,-!p2@SNAI2!1.42!153.79!SNAI2;;chr17:46682321..46682362,-!p1@HOXB6!1.42!25.04!HOXB6;;chr2:119604456..119604501,-!p2@EN1!1.42!25.04!EN1;;chr12:54393880..54393962,+!p1@HOXC9!1.42!25.04!HOXC9;;chr19:7584815..7584829,+!p2@ZNF358!1.40!32.19!ZNF358;;chr17:59477275..59477286,+!p3@TBX2!1.40!32.19!TBX2;;chr17:59477233..59477263,+!p1@TBX2!1.39!71.53!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.37!96.57!NR2F1;;chr19:45260775..45260838,+!p5@BCL3!1.36!28.61!BCL3;;chr6:34204672..34204692,+!p1@HMGA1!1.35!2317.61!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!1.35!92.99!TOX2;;chr9:132427883..132427951,+!p2@PRRX2!1.35!21.46!PRRX2;;chr19:13134457..13134462,+!p5@NFIX!1.33!35.77!NFIX;;chr8:49833978..49833996,-!p1@SNAI2!1.32!393.42!SNAI2;;chr19:47922750..47922795,-!p1@MEIS3!1.32!32.19!MEIS3;;chr19:56154958..56155027,+!p1@ZNF581!1.31!615.17!ZNF581;;chr19:44037546..44037594,+!p1@ZNF575!1.31!39.34!ZNF575;;chr8:37553292..37553317,+!p1@ZNF703!1.30!432.76!ZNF703;;chr19:36134528..36134563,+!p1@ETV2!1.30!53.65!ETV2;;chr19:46272106..46272115,-!p3@SIX5!1.30!50.07!SIX5;;chr9:77112244..77112262,+!p1@RORB!1.30!21.46!RORB;;chr17:3571887..3571918,-!p2@TAX1BP3!1.28!196.71!TAX1BP3;;chr14:95236440..95236465,-!p1@GSC!1.28!17.88!GSC;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.28!17.88!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!1.28!17.88!HOXC6;;chr2:85981008..85981025,+!p7@ATOH8!1.28!17.88!ATOH8;;chr14:75894714..75894733,+!p1@JDP2!1.27!486.41!JDP2;;chrX:106960285..106960299,-!p1@TSC22D3!1.27!457.80!TSC22D3;;chr2:85981222..85981259,+!p2@ATOH8!1.27!28.61!ATOH8;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!1.26!958.52!PCBP4;;chr17:61920023..61920110,-!p1@SMARCD2!1.26!236.05!SMARCD2;;chr4:2263809..2263854,-!p1@MXD4!1.25!622.32!MXD4;;chr17:46622070..46622109,-!p1@HOXB2!1.23!35.77!HOXB2;;chr7:100076723..100076737,-!p3@TSC22D4!1.23!25.04!TSC22D4;;chr7:44143925..44143970,+!p1@AEBP1!1.22!343.35!AEBP1;;chr1:23885981..23886002,-!p1@ID3!1.21!2621.62!ID3;;chr14:24837368..24837401,+!p1@NFATC4!1.21!35.77!NFATC4;;chr12:54772960..54773015,-!p3@ZNF385A!1.20!71.53!ZNF385A;;chr2:174830540..174830563,-!p8@SP3!1.20!21.46!SP3;;chr20:48807351..48807384,+!p1@CEBPB!1.19!1462.81!CEBPB;;chr7:149470641..149470694,-!p1@ZNF467!1.19!64.38!ZNF467;;chr17:46621937..46621966,-!p2@HOXB2!1.19!39.34!HOXB2;;chr1:221053049..221053075,+!p3@HLX!1.19!25.04!HLX;;chr6:34204642..34204664,+!p2@HMGA1!1.18!1859.81!HMGA1;;chr17:40440481..40440550,+!p1@STAT5A!1.18!100.14!STAT5A;;chr16:3185125..3185173,+!p1@ZNF213!1.18!35.77!ZNF213;;chr16:8962202..8962222,-!p3@CARHSP1!1.18!25.04!CARHSP1;;chr7:27192185..27192209,-!p1@HOXA3!1.18!14.31!HOXA3;;chr8:72756194..72756208,-!p9@MSC!1.18!14.31!MSC;;chr12:54378923..54378966,+!p1@HOXC10!1.18!14.31!HOXC10;;chr20:30433396..30433414,-!p1@FOXS1!1.18!14.31!FOXS1;;chr2:177001366..177001379,+!p4@HOXD3!1.18!14.31!HOXD3;;chr2:85981107..85981120,+!p3@ATOH8!1.18!14.31!ATOH8;;chr3:147111231..147111281,+!p3@ZIC1!1.18!14.31!ZIC1;;chr1:149858461..149858479,+!p1@BOLA1!1.17!5232.51!BOLA1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!1.17!135.91!GLIS2;;chr8:72756667..72756736,-!p2@MSC!1.17!21.46!MSC;;chr6:31515337..31515420,+!p1@NFKBIL1!1.16!239.63!NFKBIL1;;chr14:21566731..21566836,-!p1@ZNF219!1.16!143.06!ZNF219;;chr8:48650697..48650708,-!p2@CEBPD!1.16!100.14!CEBPD;;chr7:149470540..149470596,-!p2@ZNF467!1.16!17.88!ZNF467;;chr21:47063625..47063658,+!p1@PCBP3!1.15!57.23!PCBP3;;chr19:56111680..56111716,+!p1@ZNF524!1.15!50.07!ZNF524;;chr19:3359257..3359362,+!p3@NFIC!1.15!39.34!NFIC;;chr10:77161133..77161176,-!p3@ZNF503!1.15!28.61!ZNF503;;chr6:1389789..1389821,+!p1@FOXF2!1.15!17.88!FOXF2;;chr20:48807875..48807982,+!p2@CEBPB!1.14!275.40!CEBPB;;chr1:8483878..8483907,-!p4@RERE!1.14!50.07!RERE;;chr19:18392236..18392248,-!p2@JUND!1.13!82.26!JUND;;chr3:12330560..12330579,+!p1@PPARG!1.13!14.31!PPARG;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.31!PRRX1;;chr20:30193083..30193098,+!p1@ID1!1.12!969.25!ID1;;chr10:77161504..77161530,-!p1@ZNF503!1.12!160.95!ZNF503;;chr12:53625966..53626012,-!p2@RARG!1.12!32.19!RARG;;chr19:13134772..13134822,+!p2@NFIX!1.12!17.88!NFIX;;chr19:13106214..13106382,+!p1@NFIX!1.11!275.40!NFIX;;chr16:30583017..30583064,-!p1@ZNF688!1.11!60.80!ZNF688;;chr15:42749722..42749739,-!p2@ZFP106!1.11!21.46!ZFP106;;chr6:85474299..85474324,-!p1@TBX18!1.11!21.46!TBX18;;chr17:3571863..3571881,-!p1@TAX1BP3!1.10!829.76!TAX1BP3;;chr19:56152361..56152434,+!p1@ZNF580!1.10!304.01!ZNF580;;chr19:36545291..36545314,-!p2@THAP8!1.10!28.61!THAP8;;chr13:41240737..41240787,-!p1@FOXO1!1.09!135.91!FOXO1;;chr3:187463179..187463201,-!p2@BCL6!1.09!46.50!BCL6;;chr14:61116183..61116208,-!p1@SIX1!1.09!42.92!SIX1;;chr19:18392250..18392260,-!p4@JUND!1.09!35.77!JUND;;chr17:38465413..38465438,+!p5@RARA!1.09!17.88!RARA;;chr19:46272462..46272562,-!p1@SIX5!1.08!46.50!SIX5;;chr8:145159376..145159407,+!p1@MAF1!1.07!447.07!MAF1;;chr15:96874012..96874042,+!p2@NR2F2!1.07!96.57!NR2F2;;chr1:204042233..204042249,+!p1@SOX13!1.07!67.95!SOX13;;chr9:130954041..130954121,-!p2@CIZ1!1.07!46.50!CIZ1;;chr19:45261550..45261641,+!p6@BCL3!1.07!17.88!BCL3;;chr17:17723746..17723766,-!p5@SREBF1!1.07!17.88!SREBF1;;chr19:17356189..17356221,-!p2@NR2F6!1.07!17.88!NR2F6;;chr16:54320127..54320148,-!p6@IRX3!1.07!10.73!IRX3;;chr16:67198633..67198671,+!p1@HSF4!1.07!10.73!HSF4;;chr17:59477403..59477414,+!p4@TBX2!1.07!10.73!TBX2;;chr1:170632137..170632172,+!p10@PRRX1!1.07!10.73!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!1.07!10.73!PRRX1;;chr11:47279491..47279502,+!p6@NR1H3!1.07!10.73!NR1H3;;chr12:54394309..54394336,+!p2@HOXC9!1.07!10.73!HOXC9;;chr7:73038839..73038862,-!p1@MLXIPL!1.07!10.73!MLXIPL;;chr8:25902876..25902936,-!p1@EBF2!1.07!10.73!EBF2;;chr9:1050331..1050363,+!p1@DMRT2!1.07!10.73!DMRT2;;chr21:47063590..47063597,+!p2@PCBP3!1.07!10.73!PCBP3;;chr2:176987441..176987454,+!p1@HOXD9!1.07!10.73!HOXD9;;chr2:85981271..85981289,+!p9@ATOH8!1.07!10.73!ATOH8;;chr3:42695180..42695201,+!p2@ZBTB47!1.07!10.73!ZBTB47;;chr17:38498594..38498661,+!p2@RARA!1.06!35.77!RARA;;chr9:117150254..117150271,-!p1@AKNA!1.06!28.61!AKNA;;chr1:170633348..170633399,+!p2@PRRX1!1.06!14.31!PRRX1;;chr8:145159415..145159438,+!p2@MAF1!1.05!200.29!MAF1;;chr16:29816957..29817031,+!p7@MAZ!1.05!46.50!MAZ;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.31!HOXB7;;chr8:128748308..128748324,+!p2@MYC!1.04!278.97!MYC;;chr16:54320158..54320200,-!p5@IRX3!1.04!14.31!IRX3;;chr3:157823517..157823562,-!p1@SHOX2!1.04!10.73!SHOX2;;chr7:44143978..44143989,+!p2@AEBP1!1.03!17.88!AEBP1;;chr8:72756267..72756296,-!p4@MSC!1.03!14.31!MSC;;chr11:64073022..64073056,+!p1@ESRRA!1.02!114.45!ESRRA;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!1.02!46.50!GLIS2;;chr16:29819446..29819471,+!p9@MAZ!1.02!28.61!MAZ;;chr2:145282041..145282092,-!p8@ZEB2!1.02!14.31!ZEB2;;chr11:46299186..46299195,+!p3@CREB3L1!1.02!10.73!CREB3L1;;chr19:3366570..3366619,+!p1@NFIC!1.01!300.43!NFIC;;chr19:3359591..3359667,+!p2@NFIC!1.01!107.30!NFIC;;chr7:148892629..148892651,+!p2@ZNF282!1.01!57.23!ZNF282;;chr11:65687158..65687216,+!p4@DRAP1!1.01!53.65!DRAP1;;chrX:106960180..106960197,-!p2@TSC22D3!1.01!35.77!TSC22D3;;chr9:73029219..73029289,-!p2@KLF9!1.01!28.61!KLF9;;chr19:56152332..56152347,+!p4@ZNF580!1.01!21.46!ZNF580;;chr15:96874145..96874166,+!p7@NR2F2!1.01!17.88!NR2F2;;chr17:46675420..46675465,-!p3@HOXB6!1.01!10.73!HOXB6;;chr15:96873984..96873999,+!p3@NR2F2!1.00!67.95!NR2F2;;chr11:62521614..62521646,-!p1@ZBTB3!1.00!46.50!ZBTB3;;chr17:61920116..61920131,-!p5@SMARCD2!1.00!17.88!SMARCD2;;chr19:58987711..58987729,+!p2@ZNF446!1.00!14.31!ZNF446;;chr19:56092195..56092248,-!p1@ZNF579!0.99!96.57!ZNF579;;chr4:2263861..2263883,-!p2@MXD4!0.99!53.65!MXD4;;chr20:42543506..42543549,+!p2@TOX2!0.99!21.46!TOX2;;chr19:49140572..49140594,-!p2@DBP!0.99!14.31!DBP;;chr7:100076765..100076861,-!p1@TSC22D4!0.98!304.01!TSC22D4;;chr5:92918894..92918912,+!p2@NR2F1!0.98!28.61!NR2F1;;chr2:747304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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002570
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520adipose%252c%2520donor1.CNhs11345.11537-120A7.hg38.nobarcode.ctss.bed.gz
|id=FF:11537-120A7
|id=FF:11537-120A7
|is_a=EFO:0002091;;FF:0000096
|is_a=EFO:0002091;;FF:0000096
|is_obsolete=
|is_obsolete=
|library_id=CNhs11345
|library_id_phase_based=2:CNhs11345
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11537
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GCCAAT.11537
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11537
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GCCAAT.11537
|name=Mesenchymal Stem Cells - adipose, donor1
|name=Mesenchymal Stem Cells - adipose, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11345,LSID769,release014,COMPLETED
|profile_hcage=CNhs11345,LSID769,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10015,,,
|profile_srnaseq=SRhi10015,,,
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|rna_catalog_number=SC7515
Line 57: Line 82:
|rna_tube_id=120A7
|rna_tube_id=120A7
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10015.GCCAAT
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 79: Line 106:
|top_motifs=ZNF423:4.01497805892;ZNF238:3.18617306372;ESR1:3.00721149696;TFAP4:2.54161297151;RXR{A,B,G}:2.5006993867;GTF2A1,2:2.42664413043;EBF1:2.35625594225;GLI1..3:2.23794083683;TFAP2{A,C}:2.12676859163;ESRRA:1.91222732934;TFCP2:1.76032962868;SP1:1.74076250656;bHLH_family:1.683690583;ZNF148:1.65644050396;AR:1.60295789667;RXRA_VDR{dimer}:1.4507281933;IKZF1:1.44773881356;HES1:1.41314624311;SRF:1.39318933378;MTF1:1.32212249166;GTF2I:1.30863973228;TAL1_TCF{3,4,12}:1.30706301886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.28946426356;PATZ1:1.1989464318;NR3C1:1.1816432087;NR6A1:1.16013199638;TLX1..3_NFIC{dimer}:1.14785165655;GZF1:1.11347600134;RREB1:1.109560829;HIC1:1.03620847308;POU2F1..3:1.01319477578;XCPE1{core}:0.986797585464;GFI1B:0.980443379861;NR5A1,2:0.93261765802;TFAP2B:0.894534131805;TP53:0.831933240011;HOX{A5,B5}:0.820294235922;HAND1,2:0.810818966707;XBP1:0.8107899971;ATF6:0.787006674074;ZIC1..3:0.769856774944;STAT5{A,B}:0.746544551479;TBP:0.736533038968;TEAD1:0.727826689793;KLF4:0.661828296446;EP300:0.620695686474;LHX3,4:0.619031898669;MAZ:0.580013595478;ZBTB6:0.578688074151;STAT2,4,6:0.527930515256;SPZ1:0.520346661551;HMX1:0.48072746453;PPARG:0.476204132836;HNF4A_NR2F1,2:0.462541797259;REST:0.428799530006;NANOG:0.425256173276;HOX{A6,A7,B6,B7}:0.415956873715;PRRX1,2:0.344297766736;GCM1,2:0.290212876283;NFE2L1:0.258529571316;MZF1:0.255384051463;PBX1:0.176459348707;HNF1A:0.143349553043;NFE2L2:0.127022435601;SREBF1,2:0.115508220709;NFE2:0.0985064560901;TOPORS:0.0927963598971;NKX2-2,8:0.0581769387625;ALX4:0.0567433742529;T:0.0541019810272;RUNX1..3:0.0538737692816;UFEwm:0.0512492638273;NKX2-3_NKX2-5:0.0483001182843;BACH2:0.0425685533827;EGR1..3:0.0385105404822;NHLH1,2:0.0240846888002;CEBPA,B_DDIT3:-0.00738758731388;HLF:-0.0169663286567;YY1:-0.0461228116885;SOX{8,9,10}:-0.0496995469587;PAX5:-0.0516370978334;NFIX:-0.051651484189;PAX1,9:-0.0782359798795;FOXL1:-0.0819168743441;LEF1_TCF7_TCF7L1,2:-0.0855173654509;MYFfamily:-0.085965419688;MED-1{core}:-0.086391009925;EN1,2:-0.0864751299715;LMO2:-0.128795814842;NANOG{mouse}:-0.129256394519;FOS_FOS{B,L1}_JUN{B,D}:-0.135646140875;ZNF143:-0.153538975639;NKX3-2:-0.159347893854;SOX5:-0.16704363596;PDX1:-0.177136409409;NKX3-1:-0.178939130241;MAFB:-0.186113670257;POU6F1:-0.188620608897;NFKB1_REL_RELA:-0.206995430802;RORA:-0.249302491316;TGIF1:-0.255276256165;POU3F1..4:-0.263767931804;ETS1,2:-0.265894024874;FOSL2:-0.29540711819;RBPJ:-0.317802531706;FOX{D1,D2}:-0.330396304841;RFX1:-0.331553290978;MEF2{A,B,C,D}:-0.333744513793;SMAD1..7,9:-0.348297147345;NR1H4:-0.366462739893;NKX2-1,4:-0.366661596898;HIF1A:-0.394380428557;ONECUT1,2:-0.45663555498;GATA6:-0.473943236028;SPIB:-0.484038679429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.487519510391;NFATC1..3:-0.499354897031;ATF4:-0.513499334515;CUX2:-0.529688785892;MTE{core}:-0.536558264383;TLX2:-0.560925504419;FOX{F1,F2,J1}:-0.563040879183;SPI1:-0.578394212931;NFY{A,B,C}:-0.584672667057;SOX17:-0.590350972488;JUN:-0.61213371363;NFIL3:-0.613749712241;FOXQ1:-0.646550773309;ZFP161:-0.660928097513;DBP:-0.67608403473;STAT1,3:-0.685717217539;DMAP1_NCOR{1,2}_SMARC:-0.694104503511;FOXO1,3,4:-0.733139937598;IRF1,2:-0.754699030201;HOX{A4,D4}:-0.762438680662;FOXP3:-0.790339413761;ATF2:-0.814897641567;CREB1:-0.840273735979;MYOD1:-0.872282617468;SNAI1..3:-0.917736447138;VSX1,2:-0.945141465143;TFDP1:-1.04128368089;CDC5L:-1.04625556222;HSF1,2:-1.0954520931;GFI1:-1.10049460199;FOXA2:-1.11035574075;EVI1:-1.11248653094;SOX2:-1.14078136017;CRX:-1.1585726739;OCT4_SOX2{dimer}:-1.19234724115;E2F1..5:-1.19905175079;ZEB1:-1.20232835179;MYBL2:-1.20679338472;GATA4:-1.23779180624;POU5F1:-1.2480534702;PAX3,7:-1.25181558431;IRF7:-1.26061874226;ADNP_IRX_SIX_ZHX:-1.33073310178;BPTF:-1.33677967653;ATF5_CREB3:-1.34058180759;PAX2:-1.34467609204;PRDM1:-1.40512758208;TBX4,5:-1.43184876545;NRF1:-1.4443316565;ELF1,2,4:-1.49603495291;FOXM1:-1.50015644975;BREu{core}:-1.52619763628;TEF:-1.52724943626;RFX2..5_RFXANK_RFXAP:-1.54128102626;HBP1_HMGB_SSRP1_UBTF:-1.55585677734;PITX1..3:-1.57474388405;HOXA9_MEIS1:-1.57751743386;ELK1,4_GABP{A,B1}:-1.68395482003;ARID5B:-1.73004755708;PAX8:-1.83003221202;ZBTB16:-1.83040236019;AIRE:-1.83584714212;FOXD3:-1.90933759379;AHR_ARNT_ARNT2:-1.97212423072;ALX1:-1.98611905177;MYB:-2.00454772097;IKZF2:-2.04894448878;ZNF384:-2.09185517005;PAX6:-2.1476399221;FOXP1:-2.16801347101;POU1F1:-2.19683280904;CDX1,2,4:-2.23603147044;HMGA1,2:-2.3424764962;NKX6-1,2:-2.56838687983;PAX4:-2.57611862589;FOXN1:-2.75607690499;FOX{I1,J2}:-3.4399312689
|top_motifs=ZNF423:4.01497805892;ZNF238:3.18617306372;ESR1:3.00721149696;TFAP4:2.54161297151;RXR{A,B,G}:2.5006993867;GTF2A1,2:2.42664413043;EBF1:2.35625594225;GLI1..3:2.23794083683;TFAP2{A,C}:2.12676859163;ESRRA:1.91222732934;TFCP2:1.76032962868;SP1:1.74076250656;bHLH_family:1.683690583;ZNF148:1.65644050396;AR:1.60295789667;RXRA_VDR{dimer}:1.4507281933;IKZF1:1.44773881356;HES1:1.41314624311;SRF:1.39318933378;MTF1:1.32212249166;GTF2I:1.30863973228;TAL1_TCF{3,4,12}:1.30706301886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.28946426356;PATZ1:1.1989464318;NR3C1:1.1816432087;NR6A1:1.16013199638;TLX1..3_NFIC{dimer}:1.14785165655;GZF1:1.11347600134;RREB1:1.109560829;HIC1:1.03620847308;POU2F1..3:1.01319477578;XCPE1{core}:0.986797585464;GFI1B:0.980443379861;NR5A1,2:0.93261765802;TFAP2B:0.894534131805;TP53:0.831933240011;HOX{A5,B5}:0.820294235922;HAND1,2:0.810818966707;XBP1:0.8107899971;ATF6:0.787006674074;ZIC1..3:0.769856774944;STAT5{A,B}:0.746544551479;TBP:0.736533038968;TEAD1:0.727826689793;KLF4:0.661828296446;EP300:0.620695686474;LHX3,4:0.619031898669;MAZ:0.580013595478;ZBTB6:0.578688074151;STAT2,4,6:0.527930515256;SPZ1:0.520346661551;HMX1:0.48072746453;PPARG:0.476204132836;HNF4A_NR2F1,2:0.462541797259;REST:0.428799530006;NANOG:0.425256173276;HOX{A6,A7,B6,B7}:0.415956873715;PRRX1,2:0.344297766736;GCM1,2:0.290212876283;NFE2L1:0.258529571316;MZF1:0.255384051463;PBX1:0.176459348707;HNF1A:0.143349553043;NFE2L2:0.127022435601;SREBF1,2:0.115508220709;NFE2:0.0985064560901;TOPORS:0.0927963598971;NKX2-2,8:0.0581769387625;ALX4:0.0567433742529;T:0.0541019810272;RUNX1..3:0.0538737692816;UFEwm:0.0512492638273;NKX2-3_NKX2-5:0.0483001182843;BACH2:0.0425685533827;EGR1..3:0.0385105404822;NHLH1,2:0.0240846888002;CEBPA,B_DDIT3:-0.00738758731388;HLF:-0.0169663286567;YY1:-0.0461228116885;SOX{8,9,10}:-0.0496995469587;PAX5:-0.0516370978334;NFIX:-0.051651484189;PAX1,9:-0.0782359798795;FOXL1:-0.0819168743441;LEF1_TCF7_TCF7L1,2:-0.0855173654509;MYFfamily:-0.085965419688;MED-1{core}:-0.086391009925;EN1,2:-0.0864751299715;LMO2:-0.128795814842;NANOG{mouse}:-0.129256394519;FOS_FOS{B,L1}_JUN{B,D}:-0.135646140875;ZNF143:-0.153538975639;NKX3-2:-0.159347893854;SOX5:-0.16704363596;PDX1:-0.177136409409;NKX3-1:-0.178939130241;MAFB:-0.186113670257;POU6F1:-0.188620608897;NFKB1_REL_RELA:-0.206995430802;RORA:-0.249302491316;TGIF1:-0.255276256165;POU3F1..4:-0.263767931804;ETS1,2:-0.265894024874;FOSL2:-0.29540711819;RBPJ:-0.317802531706;FOX{D1,D2}:-0.330396304841;RFX1:-0.331553290978;MEF2{A,B,C,D}:-0.333744513793;SMAD1..7,9:-0.348297147345;NR1H4:-0.366462739893;NKX2-1,4:-0.366661596898;HIF1A:-0.394380428557;ONECUT1,2:-0.45663555498;GATA6:-0.473943236028;SPIB:-0.484038679429;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.487519510391;NFATC1..3:-0.499354897031;ATF4:-0.513499334515;CUX2:-0.529688785892;MTE{core}:-0.536558264383;TLX2:-0.560925504419;FOX{F1,F2,J1}:-0.563040879183;SPI1:-0.578394212931;NFY{A,B,C}:-0.584672667057;SOX17:-0.590350972488;JUN:-0.61213371363;NFIL3:-0.613749712241;FOXQ1:-0.646550773309;ZFP161:-0.660928097513;DBP:-0.67608403473;STAT1,3:-0.685717217539;DMAP1_NCOR{1,2}_SMARC:-0.694104503511;FOXO1,3,4:-0.733139937598;IRF1,2:-0.754699030201;HOX{A4,D4}:-0.762438680662;FOXP3:-0.790339413761;ATF2:-0.814897641567;CREB1:-0.840273735979;MYOD1:-0.872282617468;SNAI1..3:-0.917736447138;VSX1,2:-0.945141465143;TFDP1:-1.04128368089;CDC5L:-1.04625556222;HSF1,2:-1.0954520931;GFI1:-1.10049460199;FOXA2:-1.11035574075;EVI1:-1.11248653094;SOX2:-1.14078136017;CRX:-1.1585726739;OCT4_SOX2{dimer}:-1.19234724115;E2F1..5:-1.19905175079;ZEB1:-1.20232835179;MYBL2:-1.20679338472;GATA4:-1.23779180624;POU5F1:-1.2480534702;PAX3,7:-1.25181558431;IRF7:-1.26061874226;ADNP_IRX_SIX_ZHX:-1.33073310178;BPTF:-1.33677967653;ATF5_CREB3:-1.34058180759;PAX2:-1.34467609204;PRDM1:-1.40512758208;TBX4,5:-1.43184876545;NRF1:-1.4443316565;ELF1,2,4:-1.49603495291;FOXM1:-1.50015644975;BREu{core}:-1.52619763628;TEF:-1.52724943626;RFX2..5_RFXANK_RFXAP:-1.54128102626;HBP1_HMGB_SSRP1_UBTF:-1.55585677734;PITX1..3:-1.57474388405;HOXA9_MEIS1:-1.57751743386;ELK1,4_GABP{A,B1}:-1.68395482003;ARID5B:-1.73004755708;PAX8:-1.83003221202;ZBTB16:-1.83040236019;AIRE:-1.83584714212;FOXD3:-1.90933759379;AHR_ARNT_ARNT2:-1.97212423072;ALX1:-1.98611905177;MYB:-2.00454772097;IKZF2:-2.04894448878;ZNF384:-2.09185517005;PAX6:-2.1476399221;FOXP1:-2.16801347101;POU1F1:-2.19683280904;CDX1,2,4:-2.23603147044;HMGA1,2:-2.3424764962;NKX6-1,2:-2.56838687983;PAX4:-2.57611862589;FOXN1:-2.75607690499;FOX{I1,J2}:-3.4399312689
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11537-120A7;search_select_hide=table117:FF:11537-120A7
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Mesenchymal Stem Cells - adipose, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11345
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueadipose tissue
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7515
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005975
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11345 CAGE DRX008346 DRR009218
Accession ID Hg19

Library idBAMCTSS
CNhs11345 DRZ000643 DRZ002028
Accession ID Hg38

Library idBAMCTSS
CNhs11345 DRZ011993 DRZ013378
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005975
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10015.GCCAAT sRNA-Seq DRX037251 DRR041617
Accession ID Hg19

Library idBAMCTSS
SRhi10015.GCCAAT DRZ007259


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0887
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.493
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.306
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.063
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD141.36
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes1.069
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.892
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.955
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.526
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.19
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.661
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.661
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.661
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.911
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11345

Jaspar motifP-value
MA0002.20.176
MA0003.10.174
MA0004.10.347
MA0006.10.2
MA0007.10.00939
MA0009.10.751
MA0014.10.95
MA0017.10.27
MA0018.20.216
MA0019.10.0971
MA0024.15.62491e-5
MA0025.10.533
MA0027.10.279
MA0028.10.0169
MA0029.10.237
MA0030.10.718
MA0031.10.837
MA0035.20.379
MA0038.10.782
MA0039.20.229
MA0040.10.47
MA0041.10.169
MA0042.10.453
MA0043.10.256
MA0046.10.241
MA0047.20.937
MA0048.10.817
MA0050.10.171
MA0051.10.637
MA0052.10.206
MA0055.10.336
MA0057.10.37
MA0058.10.192
MA0059.10.594
MA0060.10.686
MA0061.10.943
MA0062.22.06641e-4
MA0065.20.052
MA0066.10.398
MA0067.10.106
MA0068.10.769
MA0069.10.301
MA0070.10.0404
MA0071.10.162
MA0072.10.609
MA0073.10.966
MA0074.10.154
MA0076.10.0019
MA0077.10.225
MA0078.10.731
MA0079.20.279
MA0080.20.00615
MA0081.10.256
MA0083.12.68721e-5
MA0084.10.422
MA0087.10.755
MA0088.10.287
MA0090.10.0244
MA0091.10.0125
MA0092.10.655
MA0093.10.359
MA0099.20.305
MA0100.10.0765
MA0101.10.536
MA0102.20.464
MA0103.10.362
MA0104.20.512
MA0105.10.973
MA0106.10.99
MA0107.10.817
MA0108.28.16602e-7
MA0111.10.175
MA0112.20.00403
MA0113.10.00848
MA0114.10.213
MA0115.10.833
MA0116.10.277
MA0117.10.339
MA0119.10.775
MA0122.10.829
MA0124.10.53
MA0125.10.83
MA0131.10.356
MA0135.10.21
MA0136.11.15145e-4
MA0137.20.855
MA0138.20.114
MA0139.10.995
MA0140.10.938
MA0141.10.033
MA0142.10.718
MA0143.10.468
MA0144.10.782
MA0145.10.232
MA0146.10.0128
MA0147.10.441
MA0148.10.837
MA0149.10.952
MA0150.10.807
MA0152.10.469
MA0153.10.138
MA0154.10.146
MA0155.10.0595
MA0156.11.2346e-4
MA0157.10.794
MA0159.10.606
MA0160.10.0565
MA0162.10.168
MA0163.10.237
MA0164.10.978
MA0258.10.0229
MA0259.10.347



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11345

Novel motifP-value
10.693
100.467
1000.869
1010.308
1020.788
1030.497
1040.407
1050.135
1060.0642
1070.0653
1080.785
1090.29
110.198
1100.495
1110.801
1120.954
1130.232
1140.792
1150.496
1160.196
1170.777
1180.679
1190.51
120.443
1200.639
1210.314
1220.853
1230.0033
1240.62
1250.226
1260.477
1270.722
1280.0319
1290.266
130.949
1300.0363
1310.653
1320.231
1330.806
1340.52
1350.714
1360.866
1370.0153
1380.198
1390.94
140.628
1400.0858
1410.224
1420.477
1430.587
1440.292
1450.364
1460.218
1470.139
1480.455
1490.0141
150.498
1500.277
1510.575
1520.0712
1530.86
1540.133
1550.666
1560.786
1570.0179
1580.209
1590.773
160.117
1600.0842
1610.354
1620.0718
1630.846
1640.553
1650.0484
1660.642
1670.0178
1680.714
1690.0534
170.268
180.478
190.122
20.107
200.366
210.425
220.0553
230.355
240.814
250.3
260.18
270.28
280.0654
290.775
30.984
300.0775
310.224
321.33862e-6
330.861
340.0956
350.587
360.304
370.258
380.503
390.464
40.773
400.304
410.27
420.593
430.322
440.854
450.244
460.246
470.62
480.283
490.519
50.571
500.209
510.424
520.251
530.768
540.513
550.283
560.462
570.635
580.655
590.0455
60.351
600.375
610.608
620.629
630.425
640.382
650.0483
660.803
670.57
680.0153
690.197
70.768
700.212
710.279
720.488
730.0433
740.448
750.913
760.371
770.0241
780.562
790.593
80.211
800.73
810.442
820.695
830.483
840.447
850.132
860.86
870.0505
880.467
890.275
90.0757
900.0476
910.605
920.695
930.953
940.37
950.295
960.396
970.457
980.344
990.0447



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11345


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000096 (human mesenchymal stem cell of adipose sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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