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{{UBERON
{{UBERON
|id=UBERON:0010286
|alt_id=
|name=midbrain neural tube
|namespace=
|def="Portion of  neural tube that gives rise to the midbrain." [ZFA:0007039]
|xref=TAO:0007039;;ZFA:0007039
|is_a=UBERON:0004121;;UBERON:0005291
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of  neural tube that gives rise to the midbrain." [ZFA:0007039]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010286
|is_a=UBERON:0004121 ;;UBERON:0005291
|is_obsolete=
|located_in=
|located_in=
|name=midbrain neural tube
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003080
|part_of=UBERON:0003080
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=TAO:0007039;;ZFA:0007039
}}
}}

Latest revision as of 18:08, 12 September 2014

Name:midbrain neural tube
Namespace:FANTOM
Definition:"Portion of neural tube that gives rise to the midbrain." [ZFA:0007039]
Xrefs:
links:

TAO:0007039

ZFA:0007039

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0005291(embryonic tissue)
part_of:UBERON:0003080(anterior neural tube)



Children

develops from:UBERON:0009616 (presumptive midbrain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010286 (midbrain neural tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_9768417f73cb6e108417440f99f2affap5@C1orf130
9.37e-99FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_9768417f73cb6e108417440f99f2affap5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_9768417f73cb6e108417440f99f2affap59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_9768417f73cb6e108417440f99f2affap59@ANK3
9.37e-99FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_9768417f73cb6e108417440f99f2affap@chr9:139916913..139916917, +
9.37e-99FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_9768417f73cb6e108417440f99f2affap@chr9:139916913..139916917, +
9.37e-99FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_9768417f73cb6e108417440f99f2affap@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_9768417f73cb6e108417440f99f2affap@chr4:56229918..56229919, -
9.37e-99FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_9768417f73cb6e108417440f99f2affap@chr10:68718064..68718067, -
9.37e-99FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_9768417f73cb6e108417440f99f2affap@chr10:68718064..68718067, -
2.55e-98FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr1:65776926..65776928, +
2.55e-98FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr1:65776926..65776928, +
2.55e-98FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr5:57935348..57935354, -
2.55e-98FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_bb97fd695d6f02bfc83a6104ba1aedb3p@chr5:57935348..57935354, -
1.23e-66FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_ec059ca11a7b2f70a427db088604b41ap6@PKD1L2
1.23e-66FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_ec059ca11a7b2f70a427db088604b41ap@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_ec059ca11a7b2f70a427db088604b41ap@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_ec059ca11a7b2f70a427db088604b41ap@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_ec059ca11a7b2f70a427db088604b41ap6@PKD1L2
1.23e-66FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_ec059ca11a7b2f70a427db088604b41ap@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_ec059ca11a7b2f70a427db088604b41ap@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_ec059ca11a7b2f70a427db088604b41ap@chr16:57309513..57309516, -
2.39e-66FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_cc260b842af583953ae41ea104adb9cdp@chr14:95727527..95727529, -
2.39e-66FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_cc260b842af583953ae41ea104adb9cdp@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_cc260b842af583953ae41ea104adb9cdp@chr11:7340444..7340448, +
2.39e-66FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_cc260b842af583953ae41ea104adb9cdp@chr1:44956567..44956571, +
2.39e-66FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_cc260b842af583953ae41ea104adb9cdp@chr11:7340444..7340448, +
2.39e-66FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_cc260b842af583953ae41ea104adb9cdp@chr14:95727527..95727529, -
4.66e-66FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_9043eea9c0bda32b236908f6af487883p@chr13:34922094..34922105, +
4.66e-66FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_9043eea9c0bda32b236908f6af487883p8@OMG
4.66e-66FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_9043eea9c0bda32b236908f6af487883p@chr13:34922094..34922105, +
4.66e-66FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_9043eea9c0bda32b236908f6af487883p@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_9043eea9c0bda32b236908f6af487883p@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_9043eea9c0bda32b236908f6af487883p@chr9:79516011..79516022, -
4.66e-66FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_9043eea9c0bda32b236908f6af487883p8@OMG
4.66e-66FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_9043eea9c0bda32b236908f6af487883p@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_9043eea9c0bda32b236908f6af487883p@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_9043eea9c0bda32b236908f6af487883p@chr9:79516011..79516022, -
1.46e-50FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_446aab7d8e6f245cb80d710f4aaafc03p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_446aab7d8e6f245cb80d710f4aaafc03p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_446aab7d8e6f245cb80d710f4aaafc03p@chrX:28627633..28627642, +
1.46e-50FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_446aab7d8e6f245cb80d710f4aaafc03p@chrX:28627633..28627642, +
3.99e-50FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_31e1e88b42476749ba702b19f7795ca6p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_31e1e88b42476749ba702b19f7795ca6p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_31e1e88b42476749ba702b19f7795ca6p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_31e1e88b42476749ba702b19f7795ca6p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_31e1e88b42476749ba702b19f7795ca6p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_31e1e88b42476749ba702b19f7795ca6p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_31e1e88b42476749ba702b19f7795ca6p@chr3:50717966..50717971, +
3.99e-50FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_31e1e88b42476749ba702b19f7795ca6p@chr3:50717966..50717971, +
6.58e-50FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_d1e83dbf13cc95002434f61a4d74508dp2@LOC285796
6.58e-50FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_d1e83dbf13cc95002434f61a4d74508dp10@KCNJ10
6.58e-50FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_d1e83dbf13cc95002434f61a4d74508dp10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_d1e83dbf13cc95002434f61a4d74508dp2@LOC285796
6.58e-50FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_d1e83dbf13cc95002434f61a4d74508dp@chr9:137240632..137240635, +
6.58e-50FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_d1e83dbf13cc95002434f61a4d74508dp@chr9:137240632..137240635, +
6.58e-50FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_d1e83dbf13cc95002434f61a4d74508dp@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_d1e83dbf13cc95002434f61a4d74508dp21@PLEKHG1
6.58e-50FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_d1e83dbf13cc95002434f61a4d74508dp@chr17:70910145..70910148, -
6.58e-50FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_d1e83dbf13cc95002434f61a4d74508dp@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_d1e83dbf13cc95002434f61a4d74508dp21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_d1e83dbf13cc95002434f61a4d74508dp@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_d1e83dbf13cc95002434f61a4d74508dp@chr9:19515907..19515918, -
6.58e-50FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_d1e83dbf13cc95002434f61a4d74508dp@chr17:70910145..70910148, -
6.58e-50FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_d1e83dbf13cc95002434f61a4d74508dp@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_d1e83dbf13cc95002434f61a4d74508dp@chr1:161275096..161275109, -
6.58e-50FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_d1e83dbf13cc95002434f61a4d74508dp@chr9:19515907..19515918, -
6.58e-50FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_d1e83dbf13cc95002434f61a4d74508dp@chr1:161275096..161275109, -
6.58e-50FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_d1e83dbf13cc95002434f61a4d74508dp@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_d1e83dbf13cc95002434f61a4d74508dp@chr22:48980473..48980481, +
2.38e-43FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_3dbde2c95fb95f55071bca818f67d4d6p@chr19:40804786..40804795, -
2.38e-43FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_3dbde2c95fb95f55071bca818f67d4d6p@chr19:40804786..40804795, -
6.62e-41FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_48b8ef6d8d7612bfdc6c276d07c97646p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_48b8ef6d8d7612bfdc6c276d07c97646p@chr4:139891920..139891924, -
6.62e-41FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_48b8ef6d8d7612bfdc6c276d07c97646p4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_48b8ef6d8d7612bfdc6c276d07c97646p4@C5orf64
9.91e-41FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_5a749aceabd9c6a743fe191416575ff2p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_5a749aceabd9c6a743fe191416575ff2p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_5a749aceabd9c6a743fe191416575ff2p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_5a749aceabd9c6a743fe191416575ff2p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_5a749aceabd9c6a743fe191416575ff2p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_5a749aceabd9c6a743fe191416575ff2p@chr5:152017019..152017026, +
1.48e-40FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr9:139911084..139911102, -
1.48e-40FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr9:139911084..139911102, -
1.48e-40FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr17:71046459..71046462, -
1.48e-40FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr1:161275238..161275250, -
1.48e-40FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr1:161275238..161275250, -
1.48e-40FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_e47df2a26c2c7465d1faffddf2782dfdp@chr2:135170207..135170218, +
1.48e-40FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_e47df2a26c2c7465d1faffddf2782dfdp@chr2:135170207..135170218, +
1.48e-40FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_e47df2a26c2c7465d1faffddf2782dfdp10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_e47df2a26c2c7465d1faffddf2782dfdp10@CELSR2
1.48e-40FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_e47df2a26c2c7465d1faffddf2782dfdp@chr17:71046459..71046462, -
2.21e-40FFCP PHASE1:Hg19::chr9:19513297..19513309,-#_e34ae49bd04ebad0c85caa0474bad41dp4@SLC24A2
2.21e-40FFCP PHASE2:Hg19::chr9:19513297..19513309,-#_e34ae49bd04ebad0c85caa0474bad41dp4@SLC24A2
2.21e-40FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_e34ae49bd04ebad0c85caa0474bad41dp19@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_e34ae49bd04ebad0c85caa0474bad41dp19@ADARB2
2.21e-40FFCP PHASE1:Hg19::chr10:1246245..1246252,-#_e34ae49bd04ebad0c85caa0474bad41dp20@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_e34ae49bd04ebad0c85caa0474bad41dp20@ADARB2

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