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{{UBERON
{{UBERON
|id=UBERON:0008947
|alt_id=
|name=respiratory primordium
|namespace=
|def=
|xref=EHDAA2:0004069;;ncithesaurus:Respiratory_Primordium
|is_a=UBERON:0001048
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008947
|is_a=UBERON:0001048
|is_obsolete=
|located_in=
|located_in=
|name=respiratory primordium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003258
|part_of=UBERON:0003258
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0004069;;ncithesaurus:Respiratory_Primordium
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:respiratory primordium
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0004069

ncithesaurus:Respiratory_Primordium

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001048(primordium)
part_of:UBERON:0003258(endoderm of foregut)



Children

develops from:UBERON:0000065 (respiratory tract),UBERON:0000118 (lung bud),UBERON:0001737 (larynx),UBERON:0003126 (trachea)
part of:UBERON:0005597 (lung primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008947 (respiratory primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.21e-66FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_456fc65cd417a979100fc3b737104462p4@Tbx4
1.21e-66FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_456fc65cd417a979100fc3b737104462p4@Tbx4
4.71e-66FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_7184300ff6a39a760c5db6ce5544c384p@chr9:20829911..20829920, +
4.71e-66FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_7184300ff6a39a760c5db6ce5544c384p@chr9:20829911..20829920, +
1.06e-62FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_e8a53c2e7d477f0007ae5607952a3ac1p1@ENSMUST00000134305
1.06e-62FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_e8a53c2e7d477f0007ae5607952a3ac1p1@ENSMUST00000134305
1.52e-61FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_de06c2d607f00d8e0532769b20915ef6p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.52e-61FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_de06c2d607f00d8e0532769b20915ef6p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.91e-61FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_4eed34035cd52f594ec809d5df657037p6@Tbx4
1.91e-61FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_4eed34035cd52f594ec809d5df657037p6@Tbx4
5.56e-61FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr8:94878479..94878503, -
5.56e-61FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr12:57598716..57598720, -
5.56e-61FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr8:94878479..94878503, -
5.56e-61FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr4:138812977..138812992, +
5.56e-61FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_88b85e8df6f9abdac1ae77d99f9cb12ep@chr4:138812977..138812992, +
1.35e-60FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_763f384134d892a858414f5c7f2b87cbp9@Nav2
1.35e-60FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_763f384134d892a858414f5c7f2b87cbp9@Nav2
2.87e-58FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_e0b00b25d0af6ed6e5a94399f47a7ec2p@chr12:57633887..57633899, -
2.87e-58FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_e0b00b25d0af6ed6e5a94399f47a7ec2p@chr12:57633887..57633899, -
1.23e-57FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_89ba902691cfb243e29f39368d0b8ccfp8@Nkx2-1
1.23e-57FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_89ba902691cfb243e29f39368d0b8ccfp8@Nkx2-1
1.37e-57FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_f5d97e7d33563d1863be7144ee4229d9p2@E030019B13Rik
1.37e-57FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_f5d97e7d33563d1863be7144ee4229d9p2@E030019B13Rik
1.53e-57FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_e9ee51dc74b0f7ccfe51f6f367d94f00p10@Nebl
1.53e-57FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_e9ee51dc74b0f7ccfe51f6f367d94f00p10@Nebl
1.7e-57FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_6de78c72efe0c9ca5e6fd4d394e90928p9@Nkx2-1
1.7e-57FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_6de78c72efe0c9ca5e6fd4d394e90928p9@Nkx2-1
1.79e-56FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_6af4ae109d4e279971a33e7ea26991d3p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_6af4ae109d4e279971a33e7ea26991d3p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_6af4ae109d4e279971a33e7ea26991d3p3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_6af4ae109d4e279971a33e7ea26991d3p3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_6af4ae109d4e279971a33e7ea26991d3p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_6af4ae109d4e279971a33e7ea26991d3p3@Trpm6
2.01e-56FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_ce3f00141ea126555dc4c510dafe8538p@chr12:57636278..57636289, +
2.01e-56FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_ce3f00141ea126555dc4c510dafe8538p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_ce3f00141ea126555dc4c510dafe8538p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_ce3f00141ea126555dc4c510dafe8538p@chr12:57636278..57636289, +
2.24e-56FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_225d224e71eef00a813ae67287b25a2ap@chr4:138812999..138813015, +
2.24e-56FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_225d224e71eef00a813ae67287b25a2ap@chr4:138812999..138813015, +
3.93e-56FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_4edb6abf351ee54bc7729b2e692e2b55p7@Il18r1
3.93e-56FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_4edb6abf351ee54bc7729b2e692e2b55p7@Il18r1
6.2e-56FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_46c8cdfa65ba661b6bafb762524ecbeap@chr2:66524237..66524246, -
6.2e-56FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_46c8cdfa65ba661b6bafb762524ecbeap@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_46c8cdfa65ba661b6bafb762524ecbeap@chr2:164374820..164374835, -
6.2e-56FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_46c8cdfa65ba661b6bafb762524ecbeap@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_46c8cdfa65ba661b6bafb762524ecbeap3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_46c8cdfa65ba661b6bafb762524ecbeap@chr14:70921265..70921285, -
6.2e-56FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_46c8cdfa65ba661b6bafb762524ecbeap@chr2:164374820..164374835, -
6.2e-56FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_46c8cdfa65ba661b6bafb762524ecbeap3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_46c8cdfa65ba661b6bafb762524ecbeap4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_46c8cdfa65ba661b6bafb762524ecbeap@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_46c8cdfa65ba661b6bafb762524ecbeap@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_46c8cdfa65ba661b6bafb762524ecbeap4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_46c8cdfa65ba661b6bafb762524ecbeap@chr14:70921265..70921285, -
6.2e-56FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_46c8cdfa65ba661b6bafb762524ecbeap@chr1:184610062..184610074, +
9.42e-56FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_4ce6f9458bc740eca8bd57c626ebe2bbp@chr5:120282691..120282701, +
9.42e-56FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_4ce6f9458bc740eca8bd57c626ebe2bbp@chr5:120282691..120282701, +
1.34e-54FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_23bd5df99a8aed1772e46bf19aaa8982p@chr12:57636911..57636924, -
1.34e-54FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_23bd5df99a8aed1772e46bf19aaa8982p@chr12:57636911..57636924, -
3.97e-54FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_99e05a892d127ddd77d19dfbdf1e8586p4@E030019B13Rik
3.97e-54FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_99e05a892d127ddd77d19dfbdf1e8586p4@E030019B13Rik
1.46e-52FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_40d0b7b3dca18a3fde25590314adc11fp@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_40d0b7b3dca18a3fde25590314adc11fp@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_40d0b7b3dca18a3fde25590314adc11fp@chr12:57623172..57623185, -
1.46e-52FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_40d0b7b3dca18a3fde25590314adc11fp@chr12:57623172..57623185, -
1.62e-52FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_8f9a62f520bc0c8c1f78c90fbc44dafcp@chr5:28785436..28785450, -
1.62e-52FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_8f9a62f520bc0c8c1f78c90fbc44dafcp@chr5:28785436..28785450, -
1.8e-52FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_1a13d54053d8281e38b194b1e135357cp@chr14:70922459..70922482, -
1.8e-52FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_1a13d54053d8281e38b194b1e135357cp@chr14:70922459..70922482, -
5.65e-52FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_97ead127c07e800286dffa2a369adc14p4@Etv5
5.65e-52FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_97ead127c07e800286dffa2a369adc14p4@Etv5
1.97e-51FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_556154d2a2b49a827e33f35b83aa1e49p@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_556154d2a2b49a827e33f35b83aa1e49p@chr6:72264890..72264911, +
1.97e-51FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_556154d2a2b49a827e33f35b83aa1e49p@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_556154d2a2b49a827e33f35b83aa1e49p@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_556154d2a2b49a827e33f35b83aa1e49p@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_556154d2a2b49a827e33f35b83aa1e49p@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_556154d2a2b49a827e33f35b83aa1e49p@chr6:72264418..72264441, +
1.97e-51FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_556154d2a2b49a827e33f35b83aa1e49p4@Lamp3
1.97e-51FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_556154d2a2b49a827e33f35b83aa1e49p@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_556154d2a2b49a827e33f35b83aa1e49p@chr6:72263977..72263993, +
1.97e-51FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_556154d2a2b49a827e33f35b83aa1e49p@chr14:70922486..70922510, -
1.97e-51FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_556154d2a2b49a827e33f35b83aa1e49p@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_556154d2a2b49a827e33f35b83aa1e49p@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_556154d2a2b49a827e33f35b83aa1e49p4@Lamp3
1.97e-51FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_556154d2a2b49a827e33f35b83aa1e49p@chr14:70923240..70923251, -
1.97e-51FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_556154d2a2b49a827e33f35b83aa1e49p@chr6:72263977..72263993, +
2.21e-51FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_09246a3f85b885ea72a50e5125ad4747p@chr6:72264609..72264653, -
2.21e-51FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_09246a3f85b885ea72a50e5125ad4747p@chr6:72264609..72264653, -
2.47e-51FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_679ba68eb6d87d304ea3e8b852b05f4dp@chr6:129378567..129378573, -
2.47e-51FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_679ba68eb6d87d304ea3e8b852b05f4dp@chr6:129378567..129378573, -
3.74e-51FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_2dae207f6ae6439cd6924ca7fb4dd507p16@Pde5a
3.74e-51FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_2dae207f6ae6439cd6924ca7fb4dd507p16@Pde5a
5.44e-51FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_fbdcdb337645032d6b1e679f335cd8cdp7@Nkx2-1
5.44e-51FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_fbdcdb337645032d6b1e679f335cd8cdp7@Nkx2-1

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