Personal tools

UBERON:0008835: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0008835
|alt_id=
|name=hepatic diverticulum
|namespace=
|def="The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct." [http://www.stembook.org/node/512, Wikipedia:Hepatic_diverticulum]
|xref=AAO:0011057;;EHDAA2:0000740;;EHDAA:1530;;http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png;;ncithesaurus:Hepatic_Diverticulum;;XAO:0000101
|is_a=UBERON:0005291;;UBERON:0007499;;UBERON:0009497;;UBERON:0009854
|synonym="diverticulum hepaticum" RELATED LATIN [Wikipedia:Hepatic_diverticulum];;"liver diverticulum" EXACT [XAO:0000101]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct." [http://www.stembook.org/node/512, Wikipedia:Hepatic_diverticulum]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0003894
|develops_from=UBERON:0003894
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008835
|is_a=UBERON:0004185 ;;UBERON:0005291 ;;UBERON:0007499 ;;UBERON:0009497 ;;UBERON:0009854
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0006235
|name=hepatic diverticulum
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0004161;;UBERON:0006235
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="diverticulum hepaticum" RELATED LATIN [Wikipedia:Hepatic_diverticulum];;"liver diverticulum" EXACT [XAO:0000101]
|union_of=
|xref=AAO:0011057;;EHDAA2:0000740;;EHDAA:1530;;http://upload.wikimedia.org/wikipedia/commons/4/4f/Gray1088.png;;ncithesaurus:Hepatic_Diverticulum;;XAO:0000101
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:hepatic diverticulum
Namespace:FANTOM
Definition:"The first morphological sign of the embryonic liver is the formation of the hepatic diverticulum, an out-pocket of thickened ventral foregut epithelium adjacent to the developing heart. The anterior portion of the hepatic diverticulum gives rise to the liver and intrahepatic biliary tree, while the posterior portion forms the gall bladder and extrahepatic bile duct." Wikipedia:Hepatic_diverticulum
Xrefs:
links:

AAO:0011057
EHDAA2:0000740
EHDAA:1530
[ Gray1088.png Gray1088.png]
ncithesaurus:Hepatic_Diverticulum

XAO:0000101
Synonyms: "diverticulum hepaticum" RELATED LATIN [Wikipedia:Hepatic_diverticulum]
"liver diverticulum" EXACT [XAO:0000101]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004185(endodermal part of digestive tract),UBERON:0005291(embryonic tissue),UBERON:0007499(epithelial sac),UBERON:0009497(epithelium of foregut-midgut junction),UBERON:0009854(digestive tract diverticulum)
develops_from:UBERON:0003894(liver primordium)
part_of:UBERON:0000922(embryo),UBERON:0004161(septum transversum),UBERON:0006235(foregut-midgut junction)



Children

develops from:UBERON:0001280 (liver parenchyma),UBERON:0002394 (bile duct),UBERON:0008836 (liver bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008835 (hepatic diverticulum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.22e-72FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_55f1700e6649826fe0f76fbe05a1e430p@chr5:90897694..90897705, +
1.22e-72FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_55f1700e6649826fe0f76fbe05a1e430p@chr5:90897694..90897705, +
2.2e-72FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_70f0021185b2982385769166c33dc5edp@chr19:25169885..25169900, +
2.2e-72FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_70f0021185b2982385769166c33dc5edp@chr19:25169885..25169900, +
1.13e-71FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_7600100b64236938997f338db4c1cc9ap5@NR1H4
1.13e-71FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_7600100b64236938997f338db4c1cc9ap5@NR1H4
2.32e-71FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_7e42bdd911aa4638ae6306b6b66e8174p7@TOP1MT
2.32e-71FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_7e42bdd911aa4638ae6306b6b66e8174p58@APOB
2.32e-71FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_7e42bdd911aa4638ae6306b6b66e8174p7@TOP1MT
2.32e-71FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_7e42bdd911aa4638ae6306b6b66e8174p58@APOB
5.51e-71FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_938282341103970fc292b22577173ebbp6@Insc
5.51e-71FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_938282341103970fc292b22577173ebbp6@Insc
1.7e-70FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_a23709445edfb7f108de4931f99e1260p2@uc009nzu.1
1.7e-70FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_a23709445edfb7f108de4931f99e1260p2@uc009nzu.1
1.28e-68FFCP PHASE1:Mm9::chr13:94407586..94407604,-#_3d3bece6962c9317a4fe8a442ebd8734p5@Bhmt
1.28e-68FFCP PHASE2:Mm9::chr13:94407586..94407604,-#_3d3bece6962c9317a4fe8a442ebd8734p5@Bhmt
2.27e-68FFCP PHASE1:Hg19::chr2:201171064..201171071,+#_3eae9db1e9e607624ab40f1af8214e60p19@SPATS2L
2.27e-68FFCP PHASE2:Hg19::chr2:201171064..201171071,+#_3eae9db1e9e607624ab40f1af8214e60p19@SPATS2L
2.72e-68FFCP PHASE2:Mm9::chr1:162917234..162917248,+#_105046be9a2b2ba935140344bb237e5ep@chr1:162917234..162917248, +
2.72e-68FFCP PHASE1:Mm9::chr1:162917234..162917248,+#_105046be9a2b2ba935140344bb237e5ep@chr1:162917234..162917248, +
3.5e-68FFCP PHASE1:Mm9::chr9:110892216..110892232,-#_fb28a1f20b9a3614acca8fe5327c2927p1@Rtp3
3.5e-68FFCP PHASE2:Mm9::chr9:110892216..110892232,-#_fb28a1f20b9a3614acca8fe5327c2927p1@Rtp3
2.47e-67FFCP PHASE1:Mm9::chr9:110892239..110892252,-#_880f218aa9f3a1d490ac0f6006f30357p2@Rtp3
2.47e-67FFCP PHASE2:Mm9::chr9:110892239..110892252,-#_880f218aa9f3a1d490ac0f6006f30357p2@Rtp3
2.47e-67FFCP PHASE2:Mm9::chr7:112744083..112744109,-#_880f218aa9f3a1d490ac0f6006f30357p@chr7:112744083..112744109, -
2.47e-67FFCP PHASE1:Mm9::chr7:112744083..112744109,-#_880f218aa9f3a1d490ac0f6006f30357p@chr7:112744083..112744109, -
6.55e-67FFCP PHASE2:Mm9::chr13:23928766..23928779,+#_bd03a583371f9fa7b49ea47689af4421p@chr13:23928766..23928779, +
6.55e-67FFCP PHASE1:Mm9::chr13:23928766..23928779,+#_bd03a583371f9fa7b49ea47689af4421p@chr13:23928766..23928779, +
7.85e-67FFCP PHASE1:Mm9::chr7:28237436..28237488,+#_b95bf806000db3bd707da014c18c91c9p3@Blvrb
7.85e-67FFCP PHASE2:Mm9::chr7:28237436..28237488,+#_b95bf806000db3bd707da014c18c91c9p3@Blvrb
1.58e-66FFCP PHASE2:Mm9::chr16:22894900..22894910,+#_464abd129c2c92b27a27a92331b2c588p@chr16:22894900..22894910, +
1.58e-66FFCP PHASE1:Mm9::chr2:10041210..10041222,-#_464abd129c2c92b27a27a92331b2c588p@chr2:10041210..10041222, -
1.58e-66FFCP PHASE1:Mm9::chr12:105004018..105004046,-#_464abd129c2c92b27a27a92331b2c588p@chr12:105004018..105004046, -
1.58e-66FFCP PHASE1:Mm9::chr16:22898981..22898988,-#_464abd129c2c92b27a27a92331b2c588p@chr16:22898981..22898988, -
1.58e-66FFCP PHASE2:Mm9::chr6:128436166..128436185,-#_464abd129c2c92b27a27a92331b2c588p@chr6:128436166..128436185, -
1.58e-66FFCP PHASE1:Mm9::chr16:22894900..22894910,+#_464abd129c2c92b27a27a92331b2c588p@chr16:22894900..22894910, +
1.58e-66FFCP PHASE1:Mm9::chr6:128436166..128436185,-#_464abd129c2c92b27a27a92331b2c588p@chr6:128436166..128436185, -
1.58e-66FFCP PHASE2:Mm9::chr2:10041210..10041222,-#_464abd129c2c92b27a27a92331b2c588p@chr2:10041210..10041222, -
1.58e-66FFCP PHASE2:Mm9::chr12:105004018..105004046,-#_464abd129c2c92b27a27a92331b2c588p@chr12:105004018..105004046, -
1.58e-66FFCP PHASE2:Mm9::chr16:22898981..22898988,-#_464abd129c2c92b27a27a92331b2c588p@chr16:22898981..22898988, -
1.39e-65FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_6ffd2d1f74662dabaa35f307c8665663p18@IKBKG
1.39e-65FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_6ffd2d1f74662dabaa35f307c8665663p18@IKBKG
2.18e-65FFCP PHASE2:Hg19::chr10:7745167..7745178,+#_0a33ce2cec8fb285083db7cc3a493322p3@ITIH2
2.18e-65FFCP PHASE1:Hg19::chr10:7745167..7745178,+#_0a33ce2cec8fb285083db7cc3a493322p3@ITIH2
3.98e-65FFCP PHASE1:Hg19::chr2:97216132..97216143,+#_7e607263272bc2a53c0602a477d638c9p@chr2:97216132..97216143, +
3.98e-65FFCP PHASE2:Hg19::chr2:97216132..97216143,+#_7e607263272bc2a53c0602a477d638c9p@chr2:97216132..97216143, +
1.17e-64FFCP PHASE1:Mm9::chr1:173155793..173155841,+#_0a1173de58adca46c2feb2ebabbe3440p@chr1:173155793..173155841, +
1.17e-64FFCP PHASE2:Mm9::chr1:173155793..173155841,+#_0a1173de58adca46c2feb2ebabbe3440p@chr1:173155793..173155841, +
1.34e-64FFCP PHASE1:Mm9::chr17:12588483..12588503,+#_2a950e3b180c5c382a332f6d93f51622p@chr17:12588483..12588503, +
1.34e-64FFCP PHASE2:Mm9::chr17:12588483..12588503,+#_2a950e3b180c5c382a332f6d93f51622p@chr17:12588483..12588503, +
1.38e-64FFCP PHASE2:Mm9::chr17:12584645..12584657,+#_474d7c6210303241764e14f3287e5c31p@chr17:12584645..12584657, +
1.38e-64FFCP PHASE1:Mm9::chr17:12584645..12584657,+#_474d7c6210303241764e14f3287e5c31p@chr17:12584645..12584657, +
1.62e-64FFCP PHASE2:Mm9::chr1:166179426..166179437,+#_7138c1286f72a22e860d3f48168ce9ddp@chr1:166179426..166179437, +
1.62e-64FFCP PHASE1:Mm9::chr1:166179426..166179437,+#_7138c1286f72a22e860d3f48168ce9ddp@chr1:166179426..166179437, +
1.68e-64FFCP PHASE1:Mm9::chr8:34917332..34917357,-#_f57dc92d52f5c6e4285587f2661d9da0p@chr8:34917332..34917357, -
1.68e-64FFCP PHASE2:Mm9::chr8:34917332..34917357,-#_f57dc92d52f5c6e4285587f2661d9da0p@chr8:34917332..34917357, -
4.38e-64FFCP PHASE2:Mm9::chr19:38191263..38191291,-#_4e023b46f5b55f82934aa0777c2a7a7dp@chr19:38191263..38191291, -
4.38e-64FFCP PHASE1:Mm9::chr19:38191263..38191291,-#_4e023b46f5b55f82934aa0777c2a7a7dp@chr19:38191263..38191291, -
9.3e-64FFCP PHASE2:Mm9::chr7:121912266..121912277,+#_7736371792dfaeef80e5543aa983ab13p8@Insc
9.3e-64FFCP PHASE1:Mm9::chr7:121912266..121912277,+#_7736371792dfaeef80e5543aa983ab13p8@Insc
1.1e-63FFCP PHASE1:Mm9::chr5:90893974..90893978,+#_1e32f2d856de07f1591d8a5939632665p@chr5:90893974..90893978, +
1.1e-63FFCP PHASE2:Mm9::chr5:90893974..90893978,+#_1e32f2d856de07f1591d8a5939632665p@chr5:90893974..90893978, +
1.7e-63FFCP PHASE2:Mm9::chr8:131012475..131012492,-#_a49ca7c5711c78af6e31973e852452c5p1@uc009nzu.1
1.7e-63FFCP PHASE1:Mm9::chr8:131012475..131012492,-#_a49ca7c5711c78af6e31973e852452c5p1@uc009nzu.1
1.72e-63FFCP PHASE2:Hg19::chr2:21239379..21239390,-#_1632bcf6c6f3f86466ea82a93c027725p@chr2:21239379..21239390, -
1.72e-63FFCP PHASE2:Hg19::chr20:22566089..22566097,-#_1632bcf6c6f3f86466ea82a93c027725p6@FOXA2
1.72e-63FFCP PHASE1:Hg19::chr2:21228233..21228242,-#_1632bcf6c6f3f86466ea82a93c027725p56@APOB
1.72e-63FFCP PHASE2:Hg19::chr10:82049381..82049384,-#_1632bcf6c6f3f86466ea82a93c027725p9@MAT1A
1.72e-63FFCP PHASE1:Hg19::chr2:21239379..21239390,-#_1632bcf6c6f3f86466ea82a93c027725p@chr2:21239379..21239390, -
1.72e-63FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_1632bcf6c6f3f86466ea82a93c027725p1@ENST00000421143
1.72e-63FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_1632bcf6c6f3f86466ea82a93c027725p1@ENST00000421143
1.72e-63FFCP PHASE1:Hg19::chr2:21258509..21258518,-#_1632bcf6c6f3f86466ea82a93c027725p@chr2:21258509..21258518, -
1.72e-63FFCP PHASE1:Hg19::chr10:82049381..82049384,-#_1632bcf6c6f3f86466ea82a93c027725p9@MAT1A
1.72e-63FFCP PHASE2:Hg19::chr2:21228233..21228242,-#_1632bcf6c6f3f86466ea82a93c027725p56@APOB
1.72e-63FFCP PHASE2:Hg19::chr2:21258509..21258518,-#_1632bcf6c6f3f86466ea82a93c027725p@chr2:21258509..21258518, -
1.72e-63FFCP PHASE1:Hg19::chr20:22566089..22566097,-#_1632bcf6c6f3f86466ea82a93c027725p6@FOXA2
1.85e-63FFCP PHASE2:Mm9::chr8:46380208..46380217,-#_ae983216cd5b544dfd77a328a42d3e8fp3@Klkb1
1.85e-63FFCP PHASE1:Mm9::chr8:46380208..46380217,-#_ae983216cd5b544dfd77a328a42d3e8fp3@Klkb1
2.02e-63FFCP PHASE1:Hg19::chr1:230846000..230846009,-#_8a12ec60a4e581b1b9dabe8f2cc959ecp@chr1:230846000..230846009, -
2.02e-63FFCP PHASE1:Mm9::chr3:57191661..57191672,-#_8a12ec60a4e581b1b9dabe8f2cc959ecp@chr3:57191661..57191672, -
2.02e-63FFCP PHASE2:Hg19::chr14:94844853..94844862,-#_8a12ec60a4e581b1b9dabe8f2cc959ecp35@SERPINA1
2.02e-63FFCP PHASE1:Hg19::chr14:94844853..94844862,-#_8a12ec60a4e581b1b9dabe8f2cc959ecp35@SERPINA1
2.02e-63FFCP PHASE2:Hg19::chr1:230846000..230846009,-#_8a12ec60a4e581b1b9dabe8f2cc959ecp@chr1:230846000..230846009, -
2.02e-63FFCP PHASE2:Mm9::chr3:57191661..57191672,-#_8a12ec60a4e581b1b9dabe8f2cc959ecp@chr3:57191661..57191672, -
2.18e-63FFCP PHASE2:Mm9::chr17:12583153..12583171,+#_ff31cba85642f846bd398beeceaec55bp@chr17:12583153..12583171, +
2.18e-63FFCP PHASE1:Mm9::chr17:12583153..12583171,+#_ff31cba85642f846bd398beeceaec55bp@chr17:12583153..12583171, +
2.2e-63FFCP PHASE2:Mm9::chr3:82814412..82814431,+#_30b875f2535fde70343c1fde8160b7a0p@chr3:82814412..82814431, +
2.2e-63FFCP PHASE1:Mm9::chr3:82814412..82814431,+#_30b875f2535fde70343c1fde8160b7a0p@chr3:82814412..82814431, +
3.67e-63FFCP PHASE1:Mm9::chr5:93000570..93000589,+#_832ec8f5cb45dde42343c51d15b669dap3@Fam47e
3.67e-63FFCP PHASE2:Mm9::chr5:93000570..93000589,+#_832ec8f5cb45dde42343c51d15b669dap3@Fam47e
3.85e-63FFCP PHASE2:Hg19::chr1:177939154..177939204,-#_5d052c61f09775c000216af3e0bbda4fp4@SEC16B
3.85e-63FFCP PHASE1:Hg19::chr1:177939154..177939204,-#_5d052c61f09775c000216af3e0bbda4fp4@SEC16B
5.17e-63FFCP PHASE1:Mm9::chr16:23449901..23449906,-#_3caf9a13f33af5b0d7e68348c10558b2p@chr16:23449901..23449906, -
5.17e-63FFCP PHASE1:Mm9::chr3:82835513..82835525,+#_3caf9a13f33af5b0d7e68348c10558b2p@chr3:82835513..82835525, +
5.17e-63FFCP PHASE2:Mm9::chr8:92849825..92849837,-#_3caf9a13f33af5b0d7e68348c10558b2p@chr8:92849825..92849837, -
5.17e-63FFCP PHASE2:Mm9::chr3:82835513..82835525,+#_3caf9a13f33af5b0d7e68348c10558b2p@chr3:82835513..82835525, +
5.17e-63FFCP PHASE1:Mm9::chr8:92849825..92849837,-#_3caf9a13f33af5b0d7e68348c10558b2p@chr8:92849825..92849837, -
5.17e-63FFCP PHASE1:Mm9::chr16:22895330..22895339,-#_3caf9a13f33af5b0d7e68348c10558b2p@chr16:22895330..22895339, -
5.17e-63FFCP PHASE1:Mm9::chr15:77605636..77605639,+#_3caf9a13f33af5b0d7e68348c10558b2p@chr15:77605636..77605639, +
5.17e-63FFCP PHASE2:Mm9::chr15:77605636..77605639,+#_3caf9a13f33af5b0d7e68348c10558b2p@chr15:77605636..77605639, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0008835&oldid=3277939"