Personal tools

UBERON:0006904: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0006904
|alt_id=
|name=head mesenchyme from mesoderm
|namespace=
|def=
|xref=AAO:0011051;;EFO:0003337;;EFO:0003603;;EHDAA2:0001118;;EHDAA:655;;EMAPA:16099;;EMAPA:16270;;TAO:0000998;;VHOG:0000185;;XAO:0000053;;ZFA:0000998
|is_a=UBERON:0004120;;UBERON:0005253
|synonym="cranial mesoderm" RELATED [UBERON:0005280];;"head mesenchyme derived from mesoderm" EXACT [];;"head mesenchyme from head mesoderm" EXACT [EHDAA2:0001118];;"head mesenchyme from mesoderm" EXACT [];;"head mesoderm" RELATED [AAO:0011051, UBERON:0005280];;"mesenchyme derived from head mesoderm" EXACT [EHDAA:1057];;"mesenchyme from head mesoderm" EXACT []
|comment=Editor note: merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements UBERONREF:0000002 NC meeting scheme
|comment=Editor note: merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements UBERONREF:0000002 NC meeting scheme
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=vertebrate_core
|derives_from=
|derives_from=
|develops_from=UBERON:0000926;;UBERON:0003063
|develops_from=UBERON:0000926;;UBERON:0003063
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006904
|is_a=UBERON:0004120 ;;UBERON:0005253
|is_obsolete=
|located_in=
|located_in=
|name=head mesenchyme from mesoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="cranial mesoderm" RELATED [UBERON:0005280];;"head mesenchyme derived from mesoderm" EXACT [];;"head mesenchyme from head mesoderm" EXACT [EHDAA2:0001118];;"head mesenchyme from mesoderm" EXACT [];;"head mesoderm" RELATED [AAO:0011051, UBERON:0005280];;"mesenchyme derived from head mesoderm" EXACT [EHDAA:1057];;"mesenchyme from head mesoderm" EXACT []
|union_of=
|xref=AAO:0011051;;EFO:0003337;;EFO:0003603;;EHDAA2:0001118;;EHDAA:655;;EMAPA:16099;;EMAPA:16270;;TAO:0000998;;VHOG:0000185;;XAO:0000053;;ZFA:0000998
}}
}}

Latest revision as of 17:59, 12 September 2014

Name:head mesenchyme from mesoderm
Namespace:FANTOM
Xrefs:
links:

AAO:0011051
EFO:0003337
EFO:0003603
EHDAA2:0001118
EHDAA:655
EMAPA:16099
EMAPA:16270
TAO:0000998
VHOG:0000185
XAO:0000053

ZFA:0000998
Synonyms: "cranial mesoderm" RELATED [UBERON:0005280]
"head mesenchyme derived from mesoderm" EXACT []
"head mesenchyme from head mesoderm" EXACT [EHDAA2:0001118]
"head mesenchyme from mesoderm" EXACT []
"head mesoderm" RELATED [AAO:0011051, UBERON:0005280]
"mesenchyme derived from head mesoderm" EXACT [EHDAA:1057]
"mesenchyme from head mesoderm" EXACT []
Comments:Editor note: merged in 'head mesoderm' from XAO/AAO and EFO here. Partially implements UBERONREF:0000002 NC meeting scheme
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005253(head mesenchyme)
develops_from:UBERON:0000926(mesoderm),UBERON:0003063(prechordal plate)



Children

is a:UBERON:0005705 (primary palate mesenchyme),UBERON:0006230 (extrinsic ocular pre-muscle mass),UBERON:0009617 (head paraxial mesoderm)
develops from:UBERON:0002376 (cranial muscle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006904 (head mesenchyme from mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results