UBERON:0006777: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453) | |comment=The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453) | ||
|created_by= | |created_by= | ||
| | |def="embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )]" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0006777 | |||
|is_a=UBERON:0005423 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=tectal plate | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="lamina quadrigemina" EXACT [FMA:77488, FMA:TA];;"quadrigeminal plate" EXACT [FMA:77488] | ||
|union_of= | |||
|xref=FMA:77488 | |||
}} | }} | ||
Latest revision as of 17:58, 12 September 2014
| Name: | tectal plate | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "embryologic structure that is formed by two longitudinal eminences, one on each alar plate of the midbrain. These eminences become the superior colliculus and inferior colliculus ( Carpenter-1983 )]" [http://braininfo.rprc.washington.edu/centraldirectory.aspx?type | ||
| Xrefs: |
| ||
| Synonyms: |
"lamina quadrigemina" EXACT [FMA:77488, FMA:TA] "quadrigeminal plate" EXACT [FMA:77488] | ||
| Comments: | The term "tectal plate" (or "quadrigeminal plate") is used to describe the junction of the gray and white matter in the embryo. (NeuroNames ancil-453) |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| part_of: | UBERON:0000922(embryo) |
Children
| develops from: | UBERON:0002259 (corpora quadrigemina) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006777 (tectal plate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.47e-44 | FFCP PHASE2:Mm9::chr1:158200818..158200829,-#_ca9aad28a34e08f291e76955b2cd1d52 | p@chr1:158200818..158200829, - |
| 7.47e-44 | FFCP PHASE1:Mm9::chr1:158200818..158200829,-#_ca9aad28a34e08f291e76955b2cd1d52 | p@chr1:158200818..158200829, - |
| 2.87e-30 | FFCP PHASE2:Mm9::chr15:22719411..22719436,+#_0dfb0e3aef064545469e9ae5509209a3 | p@chr15:22719411..22719436, + |
| 2.87e-30 | FFCP PHASE2:Mm9::chr1:155500060..155500061,+#_0dfb0e3aef064545469e9ae5509209a3 | p19@Rgs8 |
| 2.87e-30 | FFCP PHASE1:Mm9::chr15:22719411..22719436,+#_0dfb0e3aef064545469e9ae5509209a3 | p@chr15:22719411..22719436, + |
| 2.87e-30 | FFCP PHASE1:Mm9::chr1:155500060..155500061,+#_0dfb0e3aef064545469e9ae5509209a3 | p19@Rgs8 |
| 3.06e-23 | FFCP PHASE1:Mm9::chr2:127098489..127098493,-#_244574d69532146f2190d783281d09a5 | p@chr2:127098489..127098493, - |
| 3.06e-23 | FFCP PHASE2:Mm9::chr2:127098489..127098493,-#_244574d69532146f2190d783281d09a5 | p@chr2:127098489..127098493, - |
| 5.07e-23 | FFCP PHASE1:Mm9::chr2:158208771..158208772,+#_1c913c2ea755a888f9b40f2b22fcbb2c | p@chr2:158208771..158208772, + |
| 5.07e-23 | FFCP PHASE1:Mm9::chr16:96721083..96721092,+#_1c913c2ea755a888f9b40f2b22fcbb2c | p@chr16:96721083..96721092, + |
| 5.07e-23 | FFCP PHASE2:Mm9::chr2:158208771..158208772,+#_1c913c2ea755a888f9b40f2b22fcbb2c | p@chr2:158208771..158208772, + |
| 5.07e-23 | FFCP PHASE2:Mm9::chr16:96721083..96721092,+#_1c913c2ea755a888f9b40f2b22fcbb2c | p@chr16:96721083..96721092, + |
| 8.39e-23 | FFCP PHASE2:Mm9::chr6:20963159..20963195,-#_b7f9ca7deabb3b41dfdfb07ce007ccbd | p1@ENSMUST00000157206 |
| 8.39e-23 | FFCP PHASE1:Mm9::chr6:20963159..20963195,-#_b7f9ca7deabb3b41dfdfb07ce007ccbd | p1@ENSMUST00000157206 |
| 1.39e-22 | FFCP PHASE2:Mm9::chr6:119367617..119367641,-#_e51e6ee1421300b132c3963c1a5ae2d8 | p7@Adipor2 |
| 1.39e-22 | FFCP PHASE1:Mm9::chr6:119367617..119367641,-#_e51e6ee1421300b132c3963c1a5ae2d8 | p7@Adipor2 |
| 5.15e-19 | FFCP PHASE1:Mm9::chr14:52528327..52528336,-#_dfea5ad82bc27d17e512c87e8d8fe59b | p@chr14:52528327..52528336, - |
| 5.15e-19 | FFCP PHASE2:Mm9::chr14:52528327..52528336,-#_dfea5ad82bc27d17e512c87e8d8fe59b | p@chr14:52528327..52528336, - |
| 7.74e-19 | FFCP PHASE1:Mm9::chr19:32177340..32177351,-#_b32cc492cff236f77b854e9c78c219c2 | p@chr19:32177340..32177351, - |
| 7.74e-19 | FFCP PHASE2:Mm9::chr19:32177340..32177351,-#_b32cc492cff236f77b854e9c78c219c2 | p@chr19:32177340..32177351, - |
| 1.16e-18 | FFCP PHASE2:Mm9::chr4:98216369..98216408,+#_be5b93dc543d6fb71dfff9a3fd18654c | p@chr4:98216369..98216408, + |
| 1.16e-18 | FFCP PHASE2:Mm9::chr4:83035887..83035924,-#_be5b93dc543d6fb71dfff9a3fd18654c | p@chr4:83035887..83035924, - |
| 1.16e-18 | FFCP PHASE1:Mm9::chr4:83035887..83035924,-#_be5b93dc543d6fb71dfff9a3fd18654c | p@chr4:83035887..83035924, - |
| 1.16e-18 | FFCP PHASE1:Mm9::chr4:98216369..98216408,+#_be5b93dc543d6fb71dfff9a3fd18654c | p@chr4:98216369..98216408, + |
| 1.74e-18 | FFCP PHASE2:Mm9::chr8:123151369..123151375,+#_1813389e253d3607efa34bc6b151068d | p@chr8:123151369..123151375, + |
| 1.74e-18 | FFCP PHASE1:Mm9::chr8:123151369..123151375,+#_1813389e253d3607efa34bc6b151068d | p@chr8:123151369..123151375, + |
| 2.59e-18 | FFCP PHASE2:Mm9::chr8:108734860..108734874,+#_2d7f5f7b8b4e4dbc68f16ebea522ec55 | p3@Prmt7 |
| 2.59e-18 | FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_2d7f5f7b8b4e4dbc68f16ebea522ec55 | p@chr8:108091532..108091548, - |
| 2.59e-18 | FFCP PHASE2:Mm9::chr5:128949415..128949424,+#_2d7f5f7b8b4e4dbc68f16ebea522ec55 | p@chr5:128949415..128949424, + |
| 2.59e-18 | FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_2d7f5f7b8b4e4dbc68f16ebea522ec55 | p@chr8:108091532..108091548, - |
| 2.59e-18 | FFCP PHASE1:Mm9::chr5:128949415..128949424,+#_2d7f5f7b8b4e4dbc68f16ebea522ec55 | p@chr5:128949415..128949424, + |
| 2.59e-18 | FFCP PHASE1:Mm9::chr8:108734860..108734874,+#_2d7f5f7b8b4e4dbc68f16ebea522ec55 | p3@Prmt7 |
| 6.79e-16 | FFCP PHASE1:Mm9::chr1:101686777..101686780,+#_7d5b7d86e7d4819d50369394efbe1884 | p@chr1:101686777..101686780, + |
| 6.79e-16 | FFCP PHASE2:Mm9::chr1:101686777..101686780,+#_7d5b7d86e7d4819d50369394efbe1884 | p@chr1:101686777..101686780, + |
| 9.51e-16 | FFCP PHASE1:Mm9::chr10:115580937..115580958,+#_3ecc32afe0ef231dfff408dff9b1dc78 | p6@Ptprr |
| 9.51e-16 | FFCP PHASE2:Mm9::chr10:115580937..115580958,+#_3ecc32afe0ef231dfff408dff9b1dc78 | p6@Ptprr |
| 9.51e-16 | FFCP PHASE1:Mm9::chr9:113701949..113701960,+#_3ecc32afe0ef231dfff408dff9b1dc78 | p9@Clasp2 |
| 9.51e-16 | FFCP PHASE1:Mm9::chr17:69476739..69476749,+#_3ecc32afe0ef231dfff408dff9b1dc78 | p@chr17:69476739..69476749, + |
| 9.51e-16 | FFCP PHASE2:Mm9::chr6:120043366..120043377,+#_3ecc32afe0ef231dfff408dff9b1dc78 | p3@Ninj2 |
| 9.51e-16 | FFCP PHASE2:Mm9::chr9:113701949..113701960,+#_3ecc32afe0ef231dfff408dff9b1dc78 | p9@Clasp2 |
| 9.51e-16 | FFCP PHASE2:Mm9::chr17:69476739..69476749,+#_3ecc32afe0ef231dfff408dff9b1dc78 | p@chr17:69476739..69476749, + |
| 9.51e-16 | FFCP PHASE1:Mm9::chr6:120043366..120043377,+#_3ecc32afe0ef231dfff408dff9b1dc78 | p3@Ninj2 |
| 1.33e-15 | FFCP PHASE1:Mm9::chr11:67466144..67466155,+#_f257f709a25398fe6ec2ba3d824cf05f | p19@Gas7 |
| 1.33e-15 | FFCP PHASE2:Mm9::chr11:67466144..67466155,+#_f257f709a25398fe6ec2ba3d824cf05f | p19@Gas7 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr5:125342666..125342671,-#_752939a8cab4925ab424b55b0bc6cc7a | p15@Ccdc92 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr11:55886412..55886420,+#_752939a8cab4925ab424b55b0bc6cc7a | p@chr11:55886412..55886420, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr17:8492594..8492603,-#_752939a8cab4925ab424b55b0bc6cc7a | p@chr17:8492594..8492603, - |
| 1.86e-15 | FFCP PHASE1:Mm9::chr14:33139881..33139891,+#_752939a8cab4925ab424b55b0bc6cc7a | p@chr14:33139881..33139891, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr17:8492594..8492603,-#_752939a8cab4925ab424b55b0bc6cc7a | p@chr17:8492594..8492603, - |
| 1.86e-15 | FFCP PHASE2:Mm9::chr19:47099743..47099759,+#_752939a8cab4925ab424b55b0bc6cc7a | p@chr19:47099743..47099759, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr5:125342666..125342671,-#_752939a8cab4925ab424b55b0bc6cc7a | p15@Ccdc92 |
| 1.86e-15 | FFCP PHASE1:Mm9::chr11:55886412..55886420,+#_752939a8cab4925ab424b55b0bc6cc7a | p@chr11:55886412..55886420, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr14:33139881..33139891,+#_752939a8cab4925ab424b55b0bc6cc7a | p@chr14:33139881..33139891, + |
| 1.86e-15 | FFCP PHASE2:Mm9::chr10:111706834..111706844,+#_752939a8cab4925ab424b55b0bc6cc7a | p@chr10:111706834..111706844, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr10:111706834..111706844,+#_752939a8cab4925ab424b55b0bc6cc7a | p@chr10:111706834..111706844, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr19:47099743..47099759,+#_752939a8cab4925ab424b55b0bc6cc7a | p@chr19:47099743..47099759, + |
| 1.86e-15 | FFCP PHASE1:Mm9::chr12:104552967..104552983,-#_752939a8cab4925ab424b55b0bc6cc7a | p1@uc007ovb.1 |
| 1.86e-15 | FFCP PHASE2:Mm9::chr12:104552967..104552983,-#_752939a8cab4925ab424b55b0bc6cc7a | p1@uc007ovb.1 |
| 3.62e-14 | FFCP PHASE2:Mm9::chr19:55972431..55972440,+#_a6a3e999627689a5c605b46ea74e4d8b | p63@Tcf7l2 |
| 3.62e-14 | FFCP PHASE2:Mm9::chr16:96720848..96720858,+#_a6a3e999627689a5c605b46ea74e4d8b | p@chr16:96720848..96720858, + |
| 3.62e-14 | FFCP PHASE1:Mm9::chr16:96720848..96720858,+#_a6a3e999627689a5c605b46ea74e4d8b | p@chr16:96720848..96720858, + |
| 3.62e-14 | FFCP PHASE1:Mm9::chr19:55972431..55972440,+#_a6a3e999627689a5c605b46ea74e4d8b | p63@Tcf7l2 |
| 4.85e-14 | FFCP PHASE2:Mm9::chr14:93478934..93478944,-#_9534ae9d4003c1e174946c56c466e489 | p@chr14:93478934..93478944, - |
| 4.85e-14 | FFCP PHASE1:Mm9::chr14:93478934..93478944,-#_9534ae9d4003c1e174946c56c466e489 | p@chr14:93478934..93478944, - |
| 6.5e-14 | FFCP PHASE2:Mm9::chr2:157163160..157163163,-#_2f33e4aeb2e044b33f34ff133a8821af | p2@Ghrh |
| 6.5e-14 | FFCP PHASE1:Mm9::chr2:157163160..157163163,-#_2f33e4aeb2e044b33f34ff133a8821af | p2@Ghrh |
| 8.69e-14 | FFCP PHASE1:Mm9::chr1:6477452..6477459,+#_3a0a8fb0edce9912fc2e6af7f0569b05 | p8@St18 |
| 8.69e-14 | FFCP PHASE2:Mm9::chr10:19891807..19891818,+#_3a0a8fb0edce9912fc2e6af7f0569b05 | p@chr10:19891807..19891818, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr2:31133553..31133564,+#_3a0a8fb0edce9912fc2e6af7f0569b05 | p@chr2:31133553..31133564, + |
| 8.69e-14 | FFCP PHASE2:Mm9::chr1:6477452..6477459,+#_3a0a8fb0edce9912fc2e6af7f0569b05 | p8@St18 |
| 8.69e-14 | FFCP PHASE1:Mm9::chr10:19891807..19891818,+#_3a0a8fb0edce9912fc2e6af7f0569b05 | p@chr10:19891807..19891818, + |
| 8.69e-14 | FFCP PHASE2:Mm9::chr13:97841389..97841402,+#_3a0a8fb0edce9912fc2e6af7f0569b05 | p7@Fam169a |
| 8.69e-14 | FFCP PHASE2:Mm9::chr2:31133553..31133564,+#_3a0a8fb0edce9912fc2e6af7f0569b05 | p@chr2:31133553..31133564, + |
| 8.69e-14 | FFCP PHASE1:Mm9::chr13:97841389..97841402,+#_3a0a8fb0edce9912fc2e6af7f0569b05 | p7@Fam169a |
| 1.16e-13 | FFCP PHASE2:Mm9::chr10:3557489..3557496,-#_531de71af880e2e506c49f9ae35717e0 | p9@Oprm1 |
| 1.16e-13 | FFCP PHASE1:Mm9::chr9:103085667..103085678,+#_531de71af880e2e506c49f9ae35717e0 | p@chr9:103085667..103085678, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr9:103085667..103085678,+#_531de71af880e2e506c49f9ae35717e0 | p@chr9:103085667..103085678, + |
| 1.16e-13 | FFCP PHASE2:Mm9::chr2:163149068..163149077,+#_531de71af880e2e506c49f9ae35717e0 | p@chr2:163149068..163149077, + |
| 1.16e-13 | FFCP PHASE1:Mm9::chr2:163149068..163149077,+#_531de71af880e2e506c49f9ae35717e0 | p@chr2:163149068..163149077, + |
| 1.16e-13 | FFCP PHASE1:Mm9::chr10:3557489..3557496,-#_531de71af880e2e506c49f9ae35717e0 | p9@Oprm1 |
| 1.55e-13 | FFCP PHASE1:Mm9::chr11:52045677..52045682,+#_820456d4096a93aee84b2d0ac5794717 | p6@Skp1a |
| 1.55e-13 | FFCP PHASE1:Mm9::chr5:123300144..123300151,+#_820456d4096a93aee84b2d0ac5794717 | p5@Rnf34 |
| 1.55e-13 | FFCP PHASE2:Mm9::chr5:123300144..123300151,+#_820456d4096a93aee84b2d0ac5794717 | p5@Rnf34 |
| 1.55e-13 | FFCP PHASE2:Mm9::chr11:52045677..52045682,+#_820456d4096a93aee84b2d0ac5794717 | p6@Skp1a |
| 2.06e-13 | FFCP PHASE2:Mm9::chr7:52184898..52184907,-#_457cbbe6e3c26e72813f3fbef4f86be5 | p6@Ap2a1 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr4:43519210..43519232,+#_457cbbe6e3c26e72813f3fbef4f86be5 | p@chr4:43519210..43519232, + |
| 2.06e-13 | FFCP PHASE2:Mm9::chr6:45010099..45010108,+#_457cbbe6e3c26e72813f3fbef4f86be5 | p13@Cntnap2 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr6:45010099..45010108,+#_457cbbe6e3c26e72813f3fbef4f86be5 | p13@Cntnap2 |
| 2.06e-13 | FFCP PHASE1:Mm9::chr7:52184898..52184907,-#_457cbbe6e3c26e72813f3fbef4f86be5 | p6@Ap2a1 |
| 2.06e-13 | FFCP PHASE2:Mm9::chr10:31110259..31110265,-#_457cbbe6e3c26e72813f3fbef4f86be5 | p@chr10:31110259..31110265, - |
| 2.06e-13 | FFCP PHASE2:Mm9::chr6:126588640..126588687,-#_457cbbe6e3c26e72813f3fbef4f86be5 | p@chr6:126588640..126588687, - |
| 2.06e-13 | FFCP PHASE1:Mm9::chr10:31110259..31110265,-#_457cbbe6e3c26e72813f3fbef4f86be5 | p@chr10:31110259..31110265, - |
| 2.06e-13 | FFCP PHASE1:Mm9::chr6:126588640..126588687,-#_457cbbe6e3c26e72813f3fbef4f86be5 | p@chr6:126588640..126588687, - |
| 2.06e-13 | FFCP PHASE2:Mm9::chr4:43519210..43519232,+#_457cbbe6e3c26e72813f3fbef4f86be5 | p@chr4:43519210..43519232, + |
| 1.2e-12 | FFCP PHASE2:Mm9::chr10:4424212..4424215,+#_17bce0a3b8aa11520e3fa9750387d102 | p3@Rgs17 |
| 1.2e-12 | FFCP PHASE1:Mm9::chr10:4424212..4424215,+#_17bce0a3b8aa11520e3fa9750387d102 | p3@Rgs17 |
| 2.01e-12 | FFCP PHASE1:Mm9::chr10:85495564..85495574,+#_aaa713101838f99b23ca932b7bf65614 | p14@Fbxo7 |
| 2.01e-12 | FFCP PHASE2:Mm9::chr10:85495564..85495574,+#_aaa713101838f99b23ca932b7bf65614 | p14@Fbxo7 |
| 2.01e-12 | FFCP PHASE1:Mm9::chr2:155645140..155645170,-#_aaa713101838f99b23ca932b7bf65614 | p1@ENSMUST00000124586 |
| 2.01e-12 | FFCP PHASE2:Mm9::chr2:155645140..155645170,-#_aaa713101838f99b23ca932b7bf65614 | p1@ENSMUST00000124586 |
