UBERON:0004875: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=part_of or develops_from urogenital ridge? | |comment=part_of or develops_from urogenital ridge? | ||
|created_by= | |created_by= | ||
| | |def="a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0004876 | |develops_from=UBERON:0004876 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004875 | |||
|is_a=UBERON:0005423 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=nephrogenic cord | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord] | ||
|union_of= | |||
|xref=FMA:72168;;ncithesaurus:Nephrogenic_Cord;;SCTID:361405003 | |||
}} | }} | ||
Latest revision as of 17:49, 12 September 2014
| Name: | nephrogenic cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] | ||
| Xrefs: |
| ||
| Synonyms: | "chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord] | ||
| Comments: | part_of or develops_from urogenital ridge? |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0004876(urogenital ridge) |
| part_of: | UBERON:0000922(embryo) |
Children
| part of: | UBERON:0005754 (rostral part of nephrogenic cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004875 (nephrogenic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Defb42 |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76 | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76 | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7 | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7 | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585048..63585062, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr14:63627556..63627564, - |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3ca | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3ca | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p10@PAX2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:116901540..116901549,-#_2c808356ccd804cd36d69a04f78b05be | p4@uc007mmw.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:77645280..77645295,-#_2c808356ccd804cd36d69a04f78b05be | p@chr5:77645280..77645295, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:164479340..164479350,+#_2c808356ccd804cd36d69a04f78b05be | p@chr2:164479340..164479350, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:155738967..155738974,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:155738967..155738974, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:28323634..28323657,-#_2c808356ccd804cd36d69a04f78b05be | p@chr16:28323634..28323657, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26731771..26731780,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:26731771..26731780, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr19:17585885..17585901,-#_2c808356ccd804cd36d69a04f78b05be | p@chr19:17585885..17585901, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:75798132..75798152,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:75798132..75798152, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:114385720..114385732,-#_2c808356ccd804cd36d69a04f78b05be | p@chr12:114385720..114385732, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152302813..152302821,+#_2c808356ccd804cd36d69a04f78b05be | p3@Defb20 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:23308115..23308126,+#_2c808356ccd804cd36d69a04f78b05be | p@chr16:23308115..23308126, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19141447..19141469,+#_2c808356ccd804cd36d69a04f78b05be | p@chr8:19141447..19141469, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:24865194..24865204,+#_2c808356ccd804cd36d69a04f78b05be | p@chr17:24865194..24865204, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr18:44264128..44264135,+#_2c808356ccd804cd36d69a04f78b05be | p5@Spink12 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:120078716..120078763,-#_2c808356ccd804cd36d69a04f78b05be | p@chr5:120078716..120078763, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379454..31379466,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:31379454..31379466, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21385325..21385329,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21385325..21385329, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:34107562..34107572,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:34107562..34107572, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164479340..164479350,+#_2c808356ccd804cd36d69a04f78b05be | p@chr2:164479340..164479350, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:103746280..103746298,+#_2c808356ccd804cd36d69a04f78b05be | p@chr14:103746280..103746298, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:52712765..52712772,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:52712765..52712772, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:75798132..75798152,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:75798132..75798152, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379098..21379104,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21379098..21379104, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958844..101958851,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:101958844..101958851, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:25349488..25349492,-#_2c808356ccd804cd36d69a04f78b05be | p6@Lcn12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr18:44319583..44319592,-#_2c808356ccd804cd36d69a04f78b05be | p@chr18:44319583..44319592, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:53955299..53955306,+#_2c808356ccd804cd36d69a04f78b05be | p@chr11:53955299..53955306, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:103276578..103276585,+#_2c808356ccd804cd36d69a04f78b05be | p@chrX:103276578..103276585, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:35715997..35716008,+#_2c808356ccd804cd36d69a04f78b05be | p1@9230113P08Rik |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26785438..26785446,-#_2c808356ccd804cd36d69a04f78b05be | p3@Acad8 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:66513886..66513897,-#_2c808356ccd804cd36d69a04f78b05be | p@chr5:66513886..66513897, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:164439019..164439029,+#_2c808356ccd804cd36d69a04f78b05be | p1@Wfdc6b |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:46301295..46301302,-#_2c808356ccd804cd36d69a04f78b05be | p@chr18:46301295..46301302, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379065..21379072,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21379065..21379072, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:56469136..56469145,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:56469136..56469145, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164439019..164439029,+#_2c808356ccd804cd36d69a04f78b05be | p1@Wfdc6b |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:16663110..16663116,+#_2c808356ccd804cd36d69a04f78b05be | p3@Ntsr2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr19:24582739..24582748,-#_2c808356ccd804cd36d69a04f78b05be | p@chr19:24582739..24582748, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:53938008..53938022,+#_2c808356ccd804cd36d69a04f78b05be | p11@P4ha2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:31507623..31507631,+#_2c808356ccd804cd36d69a04f78b05be | p4@Atp4a |
| 4.54e-44 | FFCP PHASE2:Mm9::chr3:146278590..146278595,-#_2c808356ccd804cd36d69a04f78b05be | p10@Dnase2b |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21381141..21381155,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21381141..21381155, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:54678983..54678995,-#_2c808356ccd804cd36d69a04f78b05be | p@chr15:54678983..54678995, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:124447371..124447383,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:124447371..124447383, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:134913640..134913649,+#_2c808356ccd804cd36d69a04f78b05be | p@chr4:134913640..134913649, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51670340..51670346,-#_2c808356ccd804cd36d69a04f78b05be | p@chr14:51670340..51670346, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35651807..35651818,-#_2c808356ccd804cd36d69a04f78b05be | p3@9230110F15Rik |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:168436322..168436326,-#_2c808356ccd804cd36d69a04f78b05be | p@chr1:168436322..168436326, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr6:54359310..54359337,-#_2c808356ccd804cd36d69a04f78b05be | p@chr6:54359310..54359337, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:148676901..148676906,-#_2c808356ccd804cd36d69a04f78b05be | p8@9230104L09Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:34107586..34107593,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:34107586..34107593, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:156776465..156776473,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:156776465..156776473, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:75866210..75866235,+#_2c808356ccd804cd36d69a04f78b05be | p@chr2:75866210..75866235, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:151928014..151928021,+#_2c808356ccd804cd36d69a04f78b05be | p@chr7:151928014..151928021, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:103896072..103896081,-#_2c808356ccd804cd36d69a04f78b05be | p@chr12:103896072..103896081, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:11079838..11079844,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:11079838..11079844, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90155966..90155989,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:90155966..90155989, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:110131610..110131621,-#_2c808356ccd804cd36d69a04f78b05be | p11@Wars |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:148676901..148676906,-#_2c808356ccd804cd36d69a04f78b05be | p8@9230104L09Rik |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379322..21379338,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21379322..21379338, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr6:147624258..147624285,-#_2c808356ccd804cd36d69a04f78b05be | p@chr6:147624258..147624285, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:112721323..112721328,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:112721323..112721328, + |
