Personal tools

UBERON:0004874: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0004874
|alt_id=
|name=somatopleure
|namespace=
|def="a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure]
|xref=EHDAA2:0001847;;EHDAA:381;;EMAPA:16180;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png;;ncithesaurus:Somatopleure;;VHOG:0000557
|is_a=UBERON:0005423
|synonym=
|comment=todo - check relationship to LPM
|comment=todo - check relationship to LPM
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004874
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0006258
|name=somatopleure
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0003081
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0001847;;EHDAA:381;;EMAPA:16180;;http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png;;ncithesaurus:Somatopleure;;VHOG:0000557
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:somatopleure
Namespace:FANTOM
Definition:"a structure created during embryogenesis when the lateral mesoderm splits into two layers - the outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure]
Xrefs:
links:

EHDAA2:0001847
EHDAA:381
EMAPA:16180
[ 200px-Gray16.png 200px-Gray16.png]
ncithesaurus:Somatopleure

VHOG:0000557
Comments:todo - check relationship to LPM

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000922(embryo),UBERON:0003081(lateral plate mesoderm)



Children

develops from:UBERON:0005876 (undifferentiated genital tubercle),UBERON:0005971 (amniotic fold)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004874 (somatopleure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr12:53068889..53068898,-#_d6f2aa2424d8b5b314d70794700be2bdp@chr12:53068889..53068898, -
9.37e-99FFCP PHASE1:Hg19::chr12:53068923..53068932,-#_d6f2aa2424d8b5b314d70794700be2bdp@chr12:53068923..53068932, -
9.37e-99FFCP PHASE2:Hg19::chr12:53068889..53068898,-#_d6f2aa2424d8b5b314d70794700be2bdp@chr12:53068889..53068898, -
9.37e-99FFCP PHASE2:Hg19::chr12:53068923..53068932,-#_d6f2aa2424d8b5b314d70794700be2bdp@chr12:53068923..53068932, -
2.55e-98FFCP PHASE1:Hg19::chr15:45803320..45803343,+#_a184d5d555081c98dc92ed57be71307bp1@HMGN2P46
2.55e-98FFCP PHASE1:Hg19::chr16:15811123..15811133,+#_a184d5d555081c98dc92ed57be71307bp@chr16:15811123..15811133, +
2.55e-98FFCP PHASE2:Hg19::chr9:79379348..79379360,+#_a184d5d555081c98dc92ed57be71307bp1@PCA3
2.55e-98FFCP PHASE1:Hg19::chr9:79379348..79379360,+#_a184d5d555081c98dc92ed57be71307bp1@PCA3
2.55e-98FFCP PHASE2:Hg19::chr5:59672718..59672753,-#_a184d5d555081c98dc92ed57be71307bp@chr5:59672718..59672753, -
2.55e-98FFCP PHASE1:Hg19::chr5:59672718..59672753,-#_a184d5d555081c98dc92ed57be71307bp@chr5:59672718..59672753, -
2.55e-98FFCP PHASE1:Hg19::chr17:38976407..38976413,-#_a184d5d555081c98dc92ed57be71307bp20@KRT10
2.55e-98FFCP PHASE2:Hg19::chr8:72252453..72252458,-#_a184d5d555081c98dc92ed57be71307bp@chr8:72252453..72252458, -
2.55e-98FFCP PHASE1:Hg19::chr8:72252453..72252458,-#_a184d5d555081c98dc92ed57be71307bp@chr8:72252453..72252458, -
2.55e-98FFCP PHASE2:Hg19::chr15:45803320..45803343,+#_a184d5d555081c98dc92ed57be71307bp1@HMGN2P46
2.55e-98FFCP PHASE1:Hg19::chr17:38975820..38975830,-#_a184d5d555081c98dc92ed57be71307bp10@KRT10
2.55e-98FFCP PHASE2:Hg19::chr16:15811123..15811133,+#_a184d5d555081c98dc92ed57be71307bp@chr16:15811123..15811133, +
2.55e-98FFCP PHASE2:Hg19::chr17:38976407..38976413,-#_a184d5d555081c98dc92ed57be71307bp20@KRT10
2.55e-98FFCP PHASE1:Hg19::chr6:110964453..110964459,-#_a184d5d555081c98dc92ed57be71307bp16@CDK19
2.55e-98FFCP PHASE2:Hg19::chr6:110964453..110964459,-#_a184d5d555081c98dc92ed57be71307bp16@CDK19
2.55e-98FFCP PHASE2:Hg19::chr17:38975820..38975830,-#_a184d5d555081c98dc92ed57be71307bp10@KRT10
1.23e-66FFCP PHASE2:Hg19::chr12:53068552..53068579,-#_908986a18bcc13f8b19e30e13cf9abc5p@chr12:53068552..53068579, -
1.23e-66FFCP PHASE2:Hg19::chr14:74454889..74454892,-#_908986a18bcc13f8b19e30e13cf9abc5p10@ENTPD5
1.23e-66FFCP PHASE1:Hg19::chr12:53068552..53068579,-#_908986a18bcc13f8b19e30e13cf9abc5p@chr12:53068552..53068579, -
1.23e-66FFCP PHASE1:Hg19::chr14:74454889..74454892,-#_908986a18bcc13f8b19e30e13cf9abc5p10@ENTPD5
2.39e-66FFCP PHASE1:Hg19::chr17:38978526..38978535,+#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr17:38978526..38978535, +
2.39e-66FFCP PHASE1:Hg19::chr1:61416169..61416181,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr1:61416169..61416181, -
2.39e-66FFCP PHASE1:Hg19::chr19:51517928..51517936,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p2@AK026045
2.39e-66FFCP PHASE2:Hg19::chr17:38975850..38975854,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p19@KRT10
2.39e-66FFCP PHASE2:Hg19::chr17:38978526..38978535,+#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr17:38978526..38978535, +
2.39e-66FFCP PHASE1:Hg19::chr1:209545365..209545377,+#_3cfbe1c4c3cec0cf7ab576c7ede39363p1@ENST00000447257
2.39e-66FFCP PHASE1:Hg19::chr17:33640639..33640650,+#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr17:33640639..33640650, +
2.39e-66FFCP PHASE2:Hg19::chr1:61416169..61416181,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr1:61416169..61416181, -
2.39e-66FFCP PHASE1:Hg19::chr19:38664309..38664322,+#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr19:38664309..38664322, +
2.39e-66FFCP PHASE2:Hg19::chr19:51517928..51517936,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p2@AK026045
2.39e-66FFCP PHASE1:Hg19::chr2:179399981..179399988,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr2:179399981..179399988, -
2.39e-66FFCP PHASE2:Hg19::chr4:186434325..186434339,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr4:186434325..186434339, -
2.39e-66FFCP PHASE1:Hg19::chr4:186434325..186434339,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr4:186434325..186434339, -
2.39e-66FFCP PHASE2:Hg19::chr17:33640639..33640650,+#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr17:33640639..33640650, +
2.39e-66FFCP PHASE1:Hg19::chr17:38975796..38975805,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p13@KRT10
2.39e-66FFCP PHASE2:Hg19::chr6:152585338..152585342,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr6:152585338..152585342, -
2.39e-66FFCP PHASE2:Hg19::chr1:209545365..209545377,+#_3cfbe1c4c3cec0cf7ab576c7ede39363p1@ENST00000447257
2.39e-66FFCP PHASE1:Hg19::chr2:179393635..179393640,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p167@TTN
2.39e-66FFCP PHASE2:Hg19::chr19:38664309..38664322,+#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr19:38664309..38664322, +
2.39e-66FFCP PHASE2:Hg19::chr2:179399981..179399988,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr2:179399981..179399988, -
2.39e-66FFCP PHASE1:Hg19::chr17:38976909..38976919,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr17:38976909..38976919, -
2.39e-66FFCP PHASE2:Hg19::chr17:38975796..38975805,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p13@KRT10
2.39e-66FFCP PHASE1:Hg19::chr6:152585338..152585342,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr6:152585338..152585342, -
2.39e-66FFCP PHASE2:Hg19::chr2:179393635..179393640,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p167@TTN
2.39e-66FFCP PHASE2:Hg19::chr17:38976909..38976919,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p@chr17:38976909..38976919, -
2.39e-66FFCP PHASE1:Hg19::chr17:38975850..38975854,-#_3cfbe1c4c3cec0cf7ab576c7ede39363p19@KRT10
4.66e-66FFCP PHASE1:Hg19::chr13:103555720..103555725,+#_36943c388a272381c66ca54920de4d50p@chr13:103555720..103555725, +
4.66e-66FFCP PHASE2:Hg19::chr16:34571309..34571314,-#_36943c388a272381c66ca54920de4d50p@chr16:34571309..34571314, -
4.66e-66FFCP PHASE2:Hg19::chr5:66771311..66771320,-#_36943c388a272381c66ca54920de4d50p2@ENST00000508512
4.66e-66FFCP PHASE1:Hg19::chr5:66771311..66771320,-#_36943c388a272381c66ca54920de4d50p2@ENST00000508512
4.66e-66FFCP PHASE2:Hg19::chr10:94301107..94301111,-#_36943c388a272381c66ca54920de4d50p18@IDE
4.66e-66FFCP PHASE2:Hg19::chr2:179542558..179542568,-#_36943c388a272381c66ca54920de4d50p@chr2:179542558..179542568, -
4.66e-66FFCP PHASE1:Hg19::chr2:152520302..152520308,-#_36943c388a272381c66ca54920de4d50p@chr2:152520302..152520308, -
4.66e-66FFCP PHASE1:Hg19::chr16:34571309..34571314,-#_36943c388a272381c66ca54920de4d50p@chr16:34571309..34571314, -
4.66e-66FFCP PHASE1:Hg19::chr10:94301107..94301111,-#_36943c388a272381c66ca54920de4d50p18@IDE
4.66e-66FFCP PHASE2:Hg19::chr2:152520302..152520308,-#_36943c388a272381c66ca54920de4d50p@chr2:152520302..152520308, -
4.66e-66FFCP PHASE1:Hg19::chr2:152520333..152520340,-#_36943c388a272381c66ca54920de4d50p@chr2:152520333..152520340, -
4.66e-66FFCP PHASE1:Hg19::chr2:152548420..152548425,-#_36943c388a272381c66ca54920de4d50p@chr2:152548420..152548425, -
4.66e-66FFCP PHASE1:Hg19::chr2:75869014..75869047,+#_36943c388a272381c66ca54920de4d50p@chr2:75869014..75869047, +
4.66e-66FFCP PHASE1:Hg19::chr3:52875783..52875812,-#_36943c388a272381c66ca54920de4d50p7@TMEM110
4.66e-66FFCP PHASE2:Hg19::chr13:103555720..103555725,+#_36943c388a272381c66ca54920de4d50p@chr13:103555720..103555725, +
4.66e-66FFCP PHASE2:Hg19::chr2:152520333..152520340,-#_36943c388a272381c66ca54920de4d50p@chr2:152520333..152520340, -
4.66e-66FFCP PHASE2:Hg19::chr2:152548420..152548425,-#_36943c388a272381c66ca54920de4d50p@chr2:152548420..152548425, -
4.66e-66FFCP PHASE2:Hg19::chr2:75869014..75869047,+#_36943c388a272381c66ca54920de4d50p@chr2:75869014..75869047, +
4.66e-66FFCP PHASE2:Hg19::chr3:52875783..52875812,-#_36943c388a272381c66ca54920de4d50p7@TMEM110
4.66e-66FFCP PHASE1:Hg19::chr2:179542558..179542568,-#_36943c388a272381c66ca54920de4d50p@chr2:179542558..179542568, -
1.46e-50FFCP PHASE2:Hg19::chr2:178753478..178753487,-#_6a7a31795eddb90cab7720e7ab3d2ca1p10@PDE11A
1.46e-50FFCP PHASE1:Hg19::chr17:4448859..4448864,-#_6a7a31795eddb90cab7720e7ab3d2ca1p@chr17:4448859..4448864, -
1.46e-50FFCP PHASE1:Hg19::chr2:178753478..178753487,-#_6a7a31795eddb90cab7720e7ab3d2ca1p10@PDE11A
1.46e-50FFCP PHASE2:Hg19::chr17:4448859..4448864,-#_6a7a31795eddb90cab7720e7ab3d2ca1p@chr17:4448859..4448864, -
2.42e-50FFCP PHASE2:Hg19::chr10:15646574..15646578,-#_9f7593684fe03c90da39c17e12e9530ap11@ITGA8
2.42e-50FFCP PHASE2:Hg19::chr2:170783857..170783860,+#_9f7593684fe03c90da39c17e12e9530ap@chr2:170783857..170783860, +
2.42e-50FFCP PHASE2:Hg19::chr20:33451327..33451358,-#_9f7593684fe03c90da39c17e12e9530ap4@GGT7
2.42e-50FFCP PHASE2:Hg19::chr16:56598984..56598990,+#_9f7593684fe03c90da39c17e12e9530ap1@MT4
2.42e-50FFCP PHASE1:Hg19::chr2:152554090..152554096,-#_9f7593684fe03c90da39c17e12e9530ap@chr2:152554090..152554096, -
2.42e-50FFCP PHASE2:Hg19::chr10:71351909..71351911,+#_9f7593684fe03c90da39c17e12e9530ap@chr10:71351909..71351911, +
2.42e-50FFCP PHASE2:Hg19::chr2:152554090..152554096,-#_9f7593684fe03c90da39c17e12e9530ap@chr2:152554090..152554096, -
2.42e-50FFCP PHASE1:Hg19::chr10:15646574..15646578,-#_9f7593684fe03c90da39c17e12e9530ap11@ITGA8
2.42e-50FFCP PHASE1:Hg19::chr16:56598984..56598990,+#_9f7593684fe03c90da39c17e12e9530ap1@MT4
2.42e-50FFCP PHASE1:Hg19::chr17:10421962..10421969,-#_9f7593684fe03c90da39c17e12e9530ap2@MYH1
2.42e-50FFCP PHASE1:Hg19::chr2:170783857..170783860,+#_9f7593684fe03c90da39c17e12e9530ap@chr2:170783857..170783860, +
2.42e-50FFCP PHASE1:Hg19::chr20:33451327..33451358,-#_9f7593684fe03c90da39c17e12e9530ap4@GGT7
2.42e-50FFCP PHASE2:Hg19::chr17:10421962..10421969,-#_9f7593684fe03c90da39c17e12e9530ap2@MYH1
2.42e-50FFCP PHASE1:Hg19::chr10:71351909..71351911,+#_9f7593684fe03c90da39c17e12e9530ap@chr10:71351909..71351911, +
3.99e-50FFCP PHASE2:Hg19::chr2:179454661..179454668,-#_4fffb60cbbf5aa2aab13d1f5359ca785p@chr2:179454661..179454668, -
3.99e-50FFCP PHASE2:Hg19::chr2:152348920..152348927,-#_4fffb60cbbf5aa2aab13d1f5359ca785p@chr2:152348920..152348927, -
3.99e-50FFCP PHASE1:Hg19::chr2:152409955..152409964,-#_4fffb60cbbf5aa2aab13d1f5359ca785p@chr2:152409955..152409964, -
3.99e-50FFCP PHASE1:Hg19::chr1:152483278..152483280,+#_4fffb60cbbf5aa2aab13d1f5359ca785p1@LCE5A
3.99e-50FFCP PHASE2:Hg19::chr2:152534162..152534168,-#_4fffb60cbbf5aa2aab13d1f5359ca785p@chr2:152534162..152534168, -
3.99e-50FFCP PHASE1:Hg19::chr16:15865517..15865522,-#_4fffb60cbbf5aa2aab13d1f5359ca785p@chr16:15865517..15865522, -
3.99e-50FFCP PHASE1:Hg19::chr12:10856739..10856746,-#_4fffb60cbbf5aa2aab13d1f5359ca785p36@CSDA
3.99e-50FFCP PHASE2:Hg19::chr2:152409955..152409964,-#_4fffb60cbbf5aa2aab13d1f5359ca785p@chr2:152409955..152409964, -
3.99e-50FFCP PHASE2:Hg19::chr1:152483278..152483280,+#_4fffb60cbbf5aa2aab13d1f5359ca785p1@LCE5A
3.99e-50FFCP PHASE1:Hg19::chr2:179399074..179399079,-#_4fffb60cbbf5aa2aab13d1f5359ca785p@chr2:179399074..179399079, -
3.99e-50FFCP PHASE2:Hg19::chr5:66771335..66771342,-#_4fffb60cbbf5aa2aab13d1f5359ca785p3@ENST00000508512
3.99e-50FFCP PHASE1:Hg19::chr5:66771335..66771342,-#_4fffb60cbbf5aa2aab13d1f5359ca785p3@ENST00000508512

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0004874&oldid=3277705"