UBERON:0004815: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004815 | |||
|is_a=UBERON:0004802 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=lower respiratory tract epithelium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001558 | |part_of=UBERON:0001558 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic];;"epithelium of lower respiratory tract" EXACT [OBOL:automatic];;"lower respiratory tract epithelial tissue" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=MA:0001481 | |||
}} | }} | ||
Latest revision as of 17:48, 12 September 2014
| Name: | lower respiratory tract epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic] "epithelium of lower respiratory tract" EXACT [OBOL:automatic] "lower respiratory tract epithelial tissue" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004802(respiratory tract epithelium) |
|---|---|
| part_of: | UBERON:0001558(lower respiratory tract) |
Children
| is a: | UBERON:0000115 (lung epithelium),UBERON:0002031 (epithelium of bronchus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
- 11457-119A8 (Bronchial Epithelial Cell, donor5)
- 11461-119B3 (Bronchial Epithelial Cell, donor6)
- 11511-119G8 (Bronchial Epithelial Cell, donor1)
- 11591-120G7 (Bronchial Epithelial Cell, donor2)
- 11672-122G7 (Bronchial Epithelial Cell, donor3)
- 11769-123I5 (Bronchial Epithelial Cell, donor7)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004815 (lower respiratory tract epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.71e-84 | FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_573bd993da986877914f93c488773d4b | p@chr3:189632708..189632721, - |
| 1.71e-84 | FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_573bd993da986877914f93c488773d4b | p@chr3:189632708..189632721, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:209823455..209823467,-#_ef183a1c44d2e14f91b27d164d3fa279 | p@chr1:209823455..209823467, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:209823455..209823467,-#_ef183a1c44d2e14f91b27d164d3fa279 | p@chr1:209823455..209823467, - |
| 3.13e-50 | FFCP PHASE1:Hg19::chr1:95088552..95088567,+#_430825e3eec9366cca8ba7e8e72e2e65 | p@chr1:95088552..95088567, + |
| 3.13e-50 | FFCP PHASE2:Hg19::chr1:95088552..95088567,+#_430825e3eec9366cca8ba7e8e72e2e65 | p@chr1:95088552..95088567, + |
| 1.03e-46 | FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_33b8f433cecddeb83901f4d032087985 | p@chr1:3591362..3591369, - |
| 1.03e-46 | FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_33b8f433cecddeb83901f4d032087985 | p@chr1:3591362..3591369, - |
| 5.0e-45 | FFCP PHASE1:Hg19::chr2:113830230..113830233,-#_e621ce44b012d2b358bc7b9ad9514510 | p@chr2:113830230..113830233, - |
| 5.0e-45 | FFCP PHASE2:Hg19::chr2:113830230..113830233,-#_e621ce44b012d2b358bc7b9ad9514510 | p@chr2:113830230..113830233, - |
| 1.92e-43 | FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_eea354103f482d267176768678fbe606 | p@chr10:73679250..73679255, - |
| 1.92e-43 | FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_eea354103f482d267176768678fbe606 | p@chr10:73679250..73679255, - |
| 7.6e-41 | FFCP PHASE1:Hg19::chr1:9953308..9953320,-#_66345f06eeff3533c33ba81920245cf7 | p9@CTNNBIP1 |
| 7.6e-41 | FFCP PHASE2:Hg19::chr1:9953308..9953320,-#_66345f06eeff3533c33ba81920245cf7 | p9@CTNNBIP1 |
| 1.49e-38 | FFCP PHASE2:Hg19::chr17:48611912..48611919,+#_95307278a377a4b7bcee29e147fe97e3 | p7@EPN3 |
| 1.49e-38 | FFCP PHASE1:Hg19::chr17:48611912..48611919,+#_95307278a377a4b7bcee29e147fe97e3 | p7@EPN3 |
| 1.62e-38 | FFCP PHASE2:Hg19::chr1:95089255..95089279,-#_d9cb2a9485c1978e9386bdc3d19acaca | p1@ENST00000435559 |
| 1.62e-38 | FFCP PHASE1:Hg19::chr1:95089255..95089279,-#_d9cb2a9485c1978e9386bdc3d19acaca | p1@ENST00000435559 |
| 1.8e-38 | FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_9c0828c473c381b8a9a066f1a063508c | p@chr7:135018332..135018336, + |
| 1.8e-38 | FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_9c0828c473c381b8a9a066f1a063508c | p@chr7:135018332..135018336, + |
| 3.06e-38 | FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_a66bd034d7cac1b389b22f1f870eaad4 | p5@EPN3 |
| 3.06e-38 | FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_a66bd034d7cac1b389b22f1f870eaad4 | p5@EPN3 |
| 5.76e-38 | FFCP PHASE1:Hg19::chr2:74211227..74211238,+#_06b9a32c89aedee6aeaa2877012998dd | p@chr2:74211227..74211238, + |
| 5.76e-38 | FFCP PHASE2:Hg19::chr2:74211227..74211238,+#_06b9a32c89aedee6aeaa2877012998dd | p@chr2:74211227..74211238, + |
| 2.35e-36 | FFCP PHASE2:Hg19::chr17:38179639..38179652,-#_6b6d1c8facf516d2d2e2ba53ca90d9ab | p7@MED24 |
| 2.35e-36 | FFCP PHASE1:Hg19::chr17:38179639..38179652,-#_6b6d1c8facf516d2d2e2ba53ca90d9ab | p7@MED24 |
| 2.53e-35 | FFCP PHASE1:Hg19::chr20:14248741..14248745,-#_08a7dda7462f464762331f63806916d1 | p@chr20:14248741..14248745, - |
| 2.53e-35 | FFCP PHASE2:Hg19::chr20:14248741..14248745,-#_08a7dda7462f464762331f63806916d1 | p@chr20:14248741..14248745, - |
| 1.96e-34 | FFCP PHASE1:Hg19::chr17:38652393..38652403,-#_f6818f78feab4c1fb156850984c160bb | p16@TNS4 |
| 1.96e-34 | FFCP PHASE2:Hg19::chr17:38652393..38652403,-#_f6818f78feab4c1fb156850984c160bb | p16@TNS4 |
| 2.75e-34 | FFCP PHASE1:Hg19::chr1:153540420..153540455,+#_b7d630aa18fdfee0f0f3c644153b02fa | p@chr1:153540420..153540455, + |
| 2.75e-34 | FFCP PHASE2:Hg19::chr1:153540420..153540455,+#_b7d630aa18fdfee0f0f3c644153b02fa | p@chr1:153540420..153540455, + |
| 3.07e-34 | FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_5ce53ad9f4be87e2801d093a37c60777 | p@chr12:52844247..52844256, - |
| 3.07e-34 | FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_5ce53ad9f4be87e2801d093a37c60777 | p@chr12:52844247..52844256, - |
| 5.51e-34 | FFCP PHASE1:Hg19::chr11:94427497..94427507,-#_d67363130bf94f0a791a1aa013aa4a31 | p@chr11:94427497..94427507, - |
| 5.51e-34 | FFCP PHASE2:Hg19::chr11:94427497..94427507,-#_d67363130bf94f0a791a1aa013aa4a31 | p@chr11:94427497..94427507, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:27181551..27181558,-#_cc02ebb8482f471a428a9ae0d813c275 | p@chr1:27181551..27181558, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:27181551..27181558,-#_cc02ebb8482f471a428a9ae0d813c275 | p@chr1:27181551..27181558, - |
| 6.76e-34 | FFCP PHASE2:Hg19::chr1:183133608..183133625,-#_6ce68a85036ed2079b1ca079faad5abc | p@chr1:183133608..183133625, - |
| 6.76e-34 | FFCP PHASE1:Hg19::chr1:183133608..183133625,-#_6ce68a85036ed2079b1ca079faad5abc | p@chr1:183133608..183133625, - |
| 1.27e-33 | FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_a97b843e2d8f156758b853b892b42db4 | p@chr3:190252374..190252383, - |
| 1.27e-33 | FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_a97b843e2d8f156758b853b892b42db4 | p@chr3:190252374..190252383, - |
| 1.5e-33 | FFCP PHASE1:Hg19::chr8:29414184..29414190,+#_bdd0d84535be5d32cbe908c2ff276837 | p@chr8:29414184..29414190, + |
| 1.5e-33 | FFCP PHASE2:Hg19::chr8:29414184..29414190,+#_bdd0d84535be5d32cbe908c2ff276837 | p@chr8:29414184..29414190, + |
| 6.66e-33 | FFCP PHASE1:Hg19::chr14:67879076..67879080,+#_790d5bd0d0889a41dadfb61550789a4b | p@chr14:67879076..67879080, + |
| 6.66e-33 | FFCP PHASE2:Hg19::chr14:67879076..67879080,+#_790d5bd0d0889a41dadfb61550789a4b | p@chr14:67879076..67879080, + |
| 1.14e-32 | FFCP PHASE2:Hg19::chr1:209807970..209807983,-#_e3a8235b57add855685d1715767cffd3 | p@chr1:209807970..209807983, - |
| 1.14e-32 | FFCP PHASE1:Hg19::chr1:209807970..209807983,-#_e3a8235b57add855685d1715767cffd3 | p@chr1:209807970..209807983, - |
| 2.68e-32 | FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_f4f4c67c8d1ed1b37524fa29d7dfec9a | p@chr6:83075367..83075383, - |
| 2.68e-32 | FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_f4f4c67c8d1ed1b37524fa29d7dfec9a | p@chr6:83075367..83075383, - |
| 2.95e-31 | FFCP PHASE1:Hg19::chr4:15937715..15937733,-#_16159742f0847505706e495e7716e18e | p@chr4:15937715..15937733, - |
| 2.95e-31 | FFCP PHASE2:Hg19::chr4:15937715..15937733,-#_16159742f0847505706e495e7716e18e | p@chr4:15937715..15937733, - |
| 6.66e-31 | FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_39aeb7675bcae5058454b009d442dc29 | p@chr9:26747081..26747110, + |
| 6.66e-31 | FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_39aeb7675bcae5058454b009d442dc29 | p@chr9:26747081..26747110, + |
| 1.0e-30 | FFCP PHASE2:Hg19::chr11:120008883..120008884,-#_beb63da6bd87cfbb49c9f9145a747dd7 | p16@TRIM29 |
| 1.0e-30 | FFCP PHASE1:Hg19::chr11:120008883..120008884,-#_beb63da6bd87cfbb49c9f9145a747dd7 | p16@TRIM29 |
| 1.09e-30 | FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_36136bb008254e1fe83531ae165f6d9a | p@chr13:61507880..61507904, - |
| 1.09e-30 | FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_36136bb008254e1fe83531ae165f6d9a | p@chr13:61507880..61507904, - |
| 1.47e-30 | FFCP PHASE1:Hg19::chr1:152475755..152475761,+#_c77c1aa2aa0bf4e6bfb79ba698dacf80 | p@chr1:152475755..152475761, + |
| 1.47e-30 | FFCP PHASE2:Hg19::chr1:152475755..152475761,+#_c77c1aa2aa0bf4e6bfb79ba698dacf80 | p@chr1:152475755..152475761, + |
| 1.66e-30 | FFCP PHASE1:Hg19::chr17:39777017..39777027,+#_b87665c8a75d4c193f15887730da401b | p@chr17:39777017..39777027, + |
| 1.66e-30 | FFCP PHASE2:Hg19::chr17:39777017..39777027,+#_b87665c8a75d4c193f15887730da401b | p@chr17:39777017..39777027, + |
| 1.71e-30 | FFCP PHASE2:Hg19::chr4:82554167..82554171,+#_5f7b02f52b07d262498d57054b97ffb3 | p@chr4:82554167..82554171, + |
| 1.71e-30 | FFCP PHASE1:Hg19::chr4:82554167..82554171,+#_5f7b02f52b07d262498d57054b97ffb3 | p@chr4:82554167..82554171, + |
| 2.24e-30 | FFCP PHASE2:Hg19::chr1:209825932..209825936,-#_d56bd0e0a2b99350632bd95cec61b0a8 | p10@LAMB3 |
| 2.24e-30 | FFCP PHASE1:Hg19::chr1:209825932..209825936,-#_d56bd0e0a2b99350632bd95cec61b0a8 | p10@LAMB3 |
| 3.1e-30 | FFCP PHASE2:Hg19::chr15:76443020..76443024,-#_ce34d35b84a47a9f57e45ee535810969 | p@chr15:76443020..76443024, - |
| 3.1e-30 | FFCP PHASE1:Hg19::chr15:76443020..76443024,-#_ce34d35b84a47a9f57e45ee535810969 | p@chr15:76443020..76443024, - |
| 3.11e-30 | FFCP PHASE2:Hg19::chr17:39780624..39780631,-#_d6d91d5b25d2c9748d54c88c5469253c | p8@KRT17 |
| 3.11e-30 | FFCP PHASE1:Hg19::chr17:39780624..39780631,-#_d6d91d5b25d2c9748d54c88c5469253c | p8@KRT17 |
| 5.61e-30 | FFCP PHASE1:Hg19::chr1:156720278..156720286,+#_1e52c31ae24bacdfe72d04f7a3e97d14 | p15@PRCC |
| 5.61e-30 | FFCP PHASE2:Hg19::chr1:156720278..156720286,+#_1e52c31ae24bacdfe72d04f7a3e97d14 | p15@PRCC |
| 8.74e-30 | FFCP PHASE2:Hg19::chr14:94426721..94426726,+#_db23e99118ca50525a68f15914aa7829 | p@chr14:94426721..94426726, + |
| 8.74e-30 | FFCP PHASE1:Hg19::chr14:94426721..94426726,+#_db23e99118ca50525a68f15914aa7829 | p@chr14:94426721..94426726, + |
| 1.34e-29 | FFCP PHASE2:Hg19::chr12:52913881..52913889,+#_fe3cab2be3a29f90e223b578a858c733 | p@chr12:52913881..52913889, + |
| 1.34e-29 | FFCP PHASE1:Hg19::chr12:52913881..52913889,+#_fe3cab2be3a29f90e223b578a858c733 | p@chr12:52913881..52913889, + |
| 1.63e-29 | FFCP PHASE2:Hg19::chr17:73719483..73719489,-#_b1110e16685b1b488b8ff8a2b26f38af | p@chr17:73719483..73719489, - |
| 1.63e-29 | FFCP PHASE1:Hg19::chr17:73719483..73719489,-#_b1110e16685b1b488b8ff8a2b26f38af | p@chr17:73719483..73719489, - |
| 1.98e-29 | FFCP PHASE2:Hg19::chr1:209827520..209827532,-#_ecc243f118a6c8540085404f5151e84a | p@chr1:209827520..209827532, - |
| 1.98e-29 | FFCP PHASE1:Hg19::chr1:209827520..209827532,-#_ecc243f118a6c8540085404f5151e84a | p@chr1:209827520..209827532, - |
| 2.64e-29 | FFCP PHASE1:Hg19::chr12:56332022..56332030,+#_6a8d86672bd062373eeb8f12c1f06804 | p17@DGKA |
| 2.64e-29 | FFCP PHASE2:Hg19::chr12:56332022..56332030,+#_6a8d86672bd062373eeb8f12c1f06804 | p17@DGKA |
| 3.27e-28 | FFCP PHASE2:Hg19::chr17:38657781..38657786,-#_478dcef6724c7e1d44007e9d73578293 | p15@TNS4 |
| 3.27e-28 | FFCP PHASE1:Hg19::chr17:38657781..38657786,-#_478dcef6724c7e1d44007e9d73578293 | p15@TNS4 |
| 4.32e-28 | FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_01b75dd814a8a0297d369b33f943fa17 | p@chr1:55436540..55436544, - |
| 4.32e-28 | FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_01b75dd814a8a0297d369b33f943fa17 | p@chr1:55436540..55436544, - |
| 6.24e-28 | FFCP PHASE1:Hg19::chr1:153534013..153534025,+#_04832319c4051075baf1d78f5459bdda | p@chr1:153534013..153534025, + |
| 6.24e-28 | FFCP PHASE2:Hg19::chr1:153534013..153534025,+#_04832319c4051075baf1d78f5459bdda | p@chr1:153534013..153534025, + |
| 8.22e-28 | FFCP PHASE1:Hg19::chr17:39768786..39768828,-#_91f90588bc06d3456e6a36322bbb0f59 | p2@KRT16 |
| 8.22e-28 | FFCP PHASE2:Hg19::chr17:39768786..39768828,-#_91f90588bc06d3456e6a36322bbb0f59 | p2@KRT16 |
| 1.22e-27 | FFCP PHASE2:Hg19::chr2:70581573..70581577,-#_bb22a2cb508d9009d431f2f6b1e1e1a8 | p@chr2:70581573..70581577, - |
| 1.22e-27 | FFCP PHASE1:Hg19::chr1:153587360..153587377,-#_bb22a2cb508d9009d431f2f6b1e1e1a8 | p@chr1:153587360..153587377, - |
| 1.22e-27 | FFCP PHASE1:Hg19::chr1:44446555..44446566,+#_bb22a2cb508d9009d431f2f6b1e1e1a8 | p16@B4GALT2 |
| 1.22e-27 | FFCP PHASE1:Hg19::chr19:48101913..48101916,-#_bb22a2cb508d9009d431f2f6b1e1e1a8 | p@chr19:48101913..48101916, - |
| 1.22e-27 | FFCP PHASE2:Hg19::chr1:153587360..153587377,-#_bb22a2cb508d9009d431f2f6b1e1e1a8 | p@chr1:153587360..153587377, - |
| 1.22e-27 | FFCP PHASE2:Hg19::chr1:44446555..44446566,+#_bb22a2cb508d9009d431f2f6b1e1e1a8 | p16@B4GALT2 |
| 1.22e-27 | FFCP PHASE2:Hg19::chr19:48101913..48101916,-#_bb22a2cb508d9009d431f2f6b1e1e1a8 | p@chr19:48101913..48101916, - |
| 1.22e-27 | FFCP PHASE1:Hg19::chr2:70581573..70581577,-#_bb22a2cb508d9009d431f2f6b1e1e1a8 | p@chr2:70581573..70581577, - |
| 1.39e-27 | FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_da0653beb08d2876eb726a398611accf | p@chr2:20402306..20402318, - |
| 1.39e-27 | FFCP PHASE1:Hg19::chr1:46647115..46647118,-#_da0653beb08d2876eb726a398611accf | p@chr1:46647115..46647118, - |
