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{{UBERON
{{UBERON
|id=UBERON:0004802
|alt_id=
|name=respiratory tract epithelium
|namespace=
|def="An epithelium that is part of a respiratory tract [Obol]." [OBOL:automatic]
|xref=BTO:0000419;;MA:0001480
|is_a=UBERON:0004807;;UBERON:0005911
|synonym="airway epithelium" RELATED [BTO:0000419];;"epithelial tissue of respiratory tract" EXACT [OBOL:automatic];;"epithelium of respiratory tract" EXACT [OBOL:automatic];;"respiratory epithelium" RELATED [BTO:0000419];;"respiratory tract epithelial tissue" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium that is part of a respiratory tract [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004802
|is_a=UBERON:0004807 ;;UBERON:0005911
|is_obsolete=
|located_in=
|located_in=
|name=respiratory tract epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000065;;UBERON:0000072
|part_of=UBERON:0000065;;UBERON:0000072
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="airway epithelium" RELATED [BTO:0000419];;"epithelial tissue of respiratory tract" EXACT [OBOL:automatic];;"epithelium of respiratory tract" EXACT [OBOL:automatic];;"respiratory epithelium" RELATED [BTO:0000419];;"respiratory tract epithelial tissue" EXACT [OBOL:automatic]
|union_of=
|xref=BTO:0000419;;MA:0001480
}}
}}

Latest revision as of 17:48, 12 September 2014

Name:respiratory tract epithelium
Namespace:FANTOM
Definition:"An epithelium that is part of a respiratory tract [Obol]." [OBOL:automatic]
Xrefs:
links:

BTO:0000419

MA:0001480
Synonyms: "airway epithelium" RELATED [BTO:0000419]
"epithelial tissue of respiratory tract" EXACT [OBOL:automatic]
"epithelium of respiratory tract" EXACT [OBOL:automatic]
"respiratory epithelium" RELATED [BTO:0000419]
"respiratory tract epithelial tissue" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004807(respiratory system epithelium),UBERON:0005911(endo-epithelium)
part_of:UBERON:0000065(respiratory tract),UBERON:0000072(segment of respiratory tract)



Children

is a:UBERON:0004814 (upper respiratory tract epithelium),UBERON:0004815 (lower respiratory tract epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004802 (respiratory tract epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.46e-24FFCP PHASE2:Hg19::chr2:233352573..233352580,-#_174545ac2e8b48c05e961e22de7f18ccp4@ECEL1
3.46e-24FFCP PHASE1:Hg19::chr2:233352573..233352580,-#_174545ac2e8b48c05e961e22de7f18ccp4@ECEL1
5.37e-22FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45399294..45399301, +
5.37e-22FFCP PHASE1:Hg19::chr7:31938679..31938703,-#_7bc101ca016e2d7608d113ff342ad204p@chr7:31938679..31938703, -
5.37e-22FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45399294..45399301, +
5.37e-22FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45405332..45405343, +
5.37e-22FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:125378873..125378876, +
5.37e-22FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45405332..45405343, +
5.37e-22FFCP PHASE2:Hg19::chr7:31938679..31938703,-#_7bc101ca016e2d7608d113ff342ad204p@chr7:31938679..31938703, -
5.37e-22FFCP PHASE2:Hg19::chr7:157944243..157944249,-#_7bc101ca016e2d7608d113ff342ad204p@chr7:157944243..157944249, -
5.37e-22FFCP PHASE1:Hg19::chr7:157944243..157944249,-#_7bc101ca016e2d7608d113ff342ad204p@chr7:157944243..157944249, -
5.37e-22FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:125378873..125378876, +
5.37e-22FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45405393..45405412, +
5.37e-22FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45399245..45399258, +
5.37e-22FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45405393..45405412, +
5.37e-22FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45399245..45399258, +
5.37e-22FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45399533..45399540, +
5.37e-22FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45399533..45399540, +
5.37e-22FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45399263..45399274, +
5.37e-22FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_7bc101ca016e2d7608d113ff342ad204p@chr6:45399263..45399274, +
1.58e-19FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_6d9132a8022a628b6f249ab27b2b51b2p@chr6:73785930..73785949, -
1.58e-19FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_6d9132a8022a628b6f249ab27b2b51b2p@chr6:73785930..73785949, -
1.68e-19FFCP PHASE2:Hg19::chr10:5057199..5057247,-#_6f2f1359ffe77078570c918a6f1cc0e7p@chr10:5057199..5057247, -
1.68e-19FFCP PHASE1:Hg19::chr10:5057199..5057247,-#_6f2f1359ffe77078570c918a6f1cc0e7p@chr10:5057199..5057247, -
6.08e-19FFCP PHASE1:Hg19::chr1:161085273..161085285,+#_ec941f29984394d03a3c30e15fdc7dd4p@chr1:161085273..161085285, +
6.08e-19FFCP PHASE2:Hg19::chr1:161085273..161085285,+#_ec941f29984394d03a3c30e15fdc7dd4p@chr1:161085273..161085285, +
5.04e-17FFCP PHASE1:Hg19::chr14:36990061..36990072,-#_5afe09f6c48b6141b0d4f8891f58e59fp11@NKX2-1
5.04e-17FFCP PHASE2:Hg19::chr14:36990061..36990072,-#_5afe09f6c48b6141b0d4f8891f58e59fp11@NKX2-1
1.43e-16FFCP PHASE1:Hg19::chr8:63077406..63077421,-#_147b2422de04bdc21f8b98484d1f79bcp@chr8:63077406..63077421, -
1.43e-16FFCP PHASE2:Hg19::chr8:63077406..63077421,-#_147b2422de04bdc21f8b98484d1f79bcp@chr8:63077406..63077421, -
1.75e-16FFCP PHASE1:Hg19::chr14:36989407..36989410,-#_6a6c0714009fbea203d832236c45fba8p15@NKX2-1
1.75e-16FFCP PHASE2:Hg19::chr14:36989407..36989410,-#_6a6c0714009fbea203d832236c45fba8p15@NKX2-1
2.52e-16FFCP PHASE2:Hg19::chr2:194367545..194367554,+#_940f023e56c8c820f7605f741cdbd534p@chr2:194367545..194367554, +
2.52e-16FFCP PHASE1:Hg19::chr2:194367545..194367554,+#_940f023e56c8c820f7605f741cdbd534p@chr2:194367545..194367554, +
1.19e-15FFCP PHASE1:Hg19::chr14:36989412..36989423,-#_e60e27a064fc8d2e022dc4eeee5949cdp12@NKX2-1
1.19e-15FFCP PHASE2:Hg19::chr14:36989412..36989423,-#_e60e27a064fc8d2e022dc4eeee5949cdp12@NKX2-1
4.02e-15FFCP PHASE2:Hg19::chr20:22565370..22565388,-#_8927e22302dacea3c57dcbc186d3c33dp2@FOXA2
4.02e-15FFCP PHASE1:Hg19::chr20:22565370..22565388,-#_8927e22302dacea3c57dcbc186d3c33dp2@FOXA2
4.91e-15FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_44dd704c28b0461b75602fdd284e7664p@chr6:45399724..45399733, +
4.91e-15FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_44dd704c28b0461b75602fdd284e7664p@chr6:45399724..45399733, +
4.91e-15FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_44dd704c28b0461b75602fdd284e7664p@chr5:92526866..92526914, -
4.91e-15FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_44dd704c28b0461b75602fdd284e7664p@chr8:40525350..40525354, -
4.91e-15FFCP PHASE2:Hg19::chr7:1968200..1968208,-#_44dd704c28b0461b75602fdd284e7664p@chr7:1968200..1968208, -
4.91e-15FFCP PHASE1:Hg19::chr7:1968200..1968208,-#_44dd704c28b0461b75602fdd284e7664p@chr7:1968200..1968208, -
4.91e-15FFCP PHASE2:Hg19::chr11:69518108..69518118,-#_44dd704c28b0461b75602fdd284e7664p@chr11:69518108..69518118, -
4.91e-15FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_44dd704c28b0461b75602fdd284e7664p@chr6:73786593..73786601, +
4.91e-15FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_44dd704c28b0461b75602fdd284e7664p@chr5:92526866..92526914, -
4.91e-15FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_44dd704c28b0461b75602fdd284e7664p@chr6:73786593..73786601, +
4.91e-15FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_44dd704c28b0461b75602fdd284e7664p@chr13:70823810..70823813, +
4.91e-15FFCP PHASE2:Hg19::chr11:69518332..69518343,-#_44dd704c28b0461b75602fdd284e7664p@chr11:69518332..69518343, -
4.91e-15FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_44dd704c28b0461b75602fdd284e7664p@chr6:45399422..45399430, +
4.91e-15FFCP PHASE1:Hg19::chr12:57638896..57638928,-#_44dd704c28b0461b75602fdd284e7664p@chr12:57638896..57638928, -
4.91e-15FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_44dd704c28b0461b75602fdd284e7664p@chr6:45399422..45399430, +
4.91e-15FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_44dd704c28b0461b75602fdd284e7664p@chr6:73786620..73786627, +
4.91e-15FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_44dd704c28b0461b75602fdd284e7664p@chr4:3344434..3344441, +
4.91e-15FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_44dd704c28b0461b75602fdd284e7664p@chr6:73786620..73786627, +
4.91e-15FFCP PHASE1:Hg19::chr11:69518108..69518118,-#_44dd704c28b0461b75602fdd284e7664p@chr11:69518108..69518118, -
4.91e-15FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_44dd704c28b0461b75602fdd284e7664p@chr4:3344434..3344441, +
4.91e-15FFCP PHASE1:Hg19::chr11:69518332..69518343,-#_44dd704c28b0461b75602fdd284e7664p@chr11:69518332..69518343, -
4.91e-15FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_44dd704c28b0461b75602fdd284e7664p@chr13:70823810..70823813, +
4.91e-15FFCP PHASE2:Hg19::chr7:1968190..1968198,-#_44dd704c28b0461b75602fdd284e7664p@chr7:1968190..1968198, -
4.91e-15FFCP PHASE1:Hg19::chr7:1968190..1968198,-#_44dd704c28b0461b75602fdd284e7664p@chr7:1968190..1968198, -
4.91e-15FFCP PHASE2:Hg19::chr12:57638896..57638928,-#_44dd704c28b0461b75602fdd284e7664p@chr12:57638896..57638928, -
4.91e-15FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_44dd704c28b0461b75602fdd284e7664p@chr8:40525350..40525354, -
5.27e-15FFCP PHASE1:Hg19::chr7:44574294..44574303,-#_fa49b72803cffe83d6f37b2af9a59151p@chr7:44574294..44574303, -
5.27e-15FFCP PHASE2:Hg19::chr7:44574294..44574303,-#_fa49b72803cffe83d6f37b2af9a59151p@chr7:44574294..44574303, -
5.27e-15FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_fa49b72803cffe83d6f37b2af9a59151p@chr5:77683792..77683799, +
5.27e-15FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_fa49b72803cffe83d6f37b2af9a59151p@chr18:10085554..10085562, +
5.27e-15FFCP PHASE2:Hg19::chr12:53686428..53686432,+#_fa49b72803cffe83d6f37b2af9a59151p@chr12:53686428..53686432, +
5.27e-15FFCP PHASE1:Hg19::chr16:19396252..19396261,+#_fa49b72803cffe83d6f37b2af9a59151p@chr16:19396252..19396261, +
5.27e-15FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_fa49b72803cffe83d6f37b2af9a59151p@chr5:77683792..77683799, +
5.27e-15FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_fa49b72803cffe83d6f37b2af9a59151p@chr18:10085554..10085562, +
5.27e-15FFCP PHASE1:Hg19::chr19:6828544..6828554,+#_fa49b72803cffe83d6f37b2af9a59151p@chr19:6828544..6828554, +
5.27e-15FFCP PHASE2:Hg19::chr19:6828544..6828554,+#_fa49b72803cffe83d6f37b2af9a59151p@chr19:6828544..6828554, +
5.27e-15FFCP PHASE1:Hg19::chr12:53686428..53686432,+#_fa49b72803cffe83d6f37b2af9a59151p@chr12:53686428..53686432, +
5.27e-15FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_fa49b72803cffe83d6f37b2af9a59151p@chr4:3310694..3310716, -
5.27e-15FFCP PHASE2:Hg19::chr16:19396252..19396261,+#_fa49b72803cffe83d6f37b2af9a59151p@chr16:19396252..19396261, +
5.27e-15FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_fa49b72803cffe83d6f37b2af9a59151p@chr4:3310694..3310716, -
5.66e-15FFCP PHASE2:Hg19::chr6:18208425..18208436,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr6:18208425..18208436, +
5.66e-15FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr2:233352641..233352675, +
5.66e-15FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr2:233352641..233352675, +
5.66e-15FFCP PHASE1:Hg19::chr18:71843121..71843138,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr18:71843121..71843138, +
5.66e-15FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_f58829ad1c2e7e7cd85944d525b294c7p@chr1:156779602..156779619, -
5.66e-15FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_f58829ad1c2e7e7cd85944d525b294c7p@chr1:156779602..156779619, -
5.66e-15FFCP PHASE2:Hg19::chr18:71843121..71843138,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr18:71843121..71843138, +
5.66e-15FFCP PHASE1:Hg19::chr18:71843159..71843180,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr18:71843159..71843180, +
5.66e-15FFCP PHASE2:Hg19::chr18:71843159..71843180,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr18:71843159..71843180, +
5.66e-15FFCP PHASE1:Hg19::chr18:72611750..72611755,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr18:72611750..72611755, +
5.66e-15FFCP PHASE2:Hg19::chr18:72611750..72611755,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr18:72611750..72611755, +
5.66e-15FFCP PHASE1:Hg19::chr6:18208425..18208436,+#_f58829ad1c2e7e7cd85944d525b294c7p@chr6:18208425..18208436, +
5.96e-15FFCP PHASE1:Hg19::chr14:36982724..36982767,-#_fc80255a672a07d5871ade5f00273212p1@SFTA3
5.96e-15FFCP PHASE2:Hg19::chr14:36982724..36982767,-#_fc80255a672a07d5871ade5f00273212p1@SFTA3
2.37e-14FFCP PHASE2:Hg19::chr11:123325116..123325128,+#_8a928de5cf3788734634c5b63814e4b5p4@ENST00000525757, p4@uc001pyv.1
2.37e-14FFCP PHASE1:Hg19::chr11:123325116..123325128,+#_8a928de5cf3788734634c5b63814e4b5p4@ENST00000525757, p4@uc001pyv.1
2.81e-14FFCP PHASE1:Hg19::chrY:59027988..59028000,+#_c991870036011a6a7e1031fdef89aa41p@chrY:59027988..59028000, +
2.81e-14FFCP PHASE2:Hg19::chrY:59027988..59028000,+#_c991870036011a6a7e1031fdef89aa41p@chrY:59027988..59028000, +
3.31e-14FFCP PHASE1:Hg19::chr14:36982935..36982943,-#_52b19914d29b33e2822ca671a9fa2323p9@SFTA3
3.31e-14FFCP PHASE1:Hg19::chr11:17555398..17555410,-#_52b19914d29b33e2822ca671a9fa2323p9@USH1C
3.31e-14FFCP PHASE2:Hg19::chr14:36982935..36982943,-#_52b19914d29b33e2822ca671a9fa2323p9@SFTA3
3.31e-14FFCP PHASE2:Hg19::chr11:17555398..17555410,-#_52b19914d29b33e2822ca671a9fa2323p9@USH1C

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