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{{UBERON
{{UBERON
|id=UBERON:0002031
|alt_id=UBERON:FMA_67782-MA_0001839
|name=epithelium of bronchus
|namespace=
|def="An epithelium that is part of a bronchus [Obol]." [OBOL:automatic]
|xref=BTO:0001845;;EFO:0000307;;FMA:67782;;MA:0001839;;ncithesaurus:Bronchial_Epithelium
|is_a=UBERON:0000485;;UBERON:0004815
|synonym="bronchi epithelial tissue" EXACT [OBOL:automatic];;"bronchi epithelium" EXACT [OBOL:automatic];;"bronchial epithelium" EXACT [];;"bronchial trunk epithelial tissue" EXACT [OBOL:automatic];;"bronchial trunk epithelium" EXACT [OBOL:automatic];;"bronchus epithelial tissue" EXACT [OBOL:automatic];;"bronchus epithelium" EXACT [];;"epithelial tissue of bronchi" EXACT [OBOL:automatic];;"epithelial tissue of bronchial trunk" EXACT [OBOL:automatic];;"epithelial tissue of bronchus" EXACT [OBOL:automatic];;"epithelium of bronchi" EXACT [OBOL:automatic];;"epithelium of bronchial trunk" EXACT [OBOL:automatic]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_67782-MA_0001839
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium that is part of a bronchus [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002031
|is_a=UBERON:0000485 ;;UBERON:0004815
|is_obsolete=
|located_in=
|located_in=
|name=epithelium of bronchus
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002185
|part_of=UBERON:0002185
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="bronchi epithelial tissue" EXACT [OBOL:automatic];;"bronchi epithelium" EXACT [OBOL:automatic];;"bronchial epithelium" EXACT [];;"bronchial trunk epithelial tissue" EXACT [OBOL:automatic];;"bronchial trunk epithelium" EXACT [OBOL:automatic];;"bronchus epithelial tissue" EXACT [OBOL:automatic];;"bronchus epithelium" EXACT [];;"epithelial tissue of bronchi" EXACT [OBOL:automatic];;"epithelial tissue of bronchial trunk" EXACT [OBOL:automatic];;"epithelial tissue of bronchus" EXACT [OBOL:automatic];;"epithelium of bronchi" EXACT [OBOL:automatic];;"epithelium of bronchial trunk" EXACT [OBOL:automatic]
|union_of=
|xref=BTO:0001845;;EFO:0000307;;FMA:67782;;MA:0001839;;ncithesaurus:Bronchial_Epithelium
}}
}}

Latest revision as of 17:24, 12 September 2014

Name:epithelium of bronchus
Namespace:FANTOM
Definition:"An epithelium that is part of a bronchus [Obol]." [OBOL:automatic]
Xrefs:
links:

BTO:0001845
EFO:0000307
FMA:67782
MA:0001839

ncithesaurus:Bronchial_Epithelium
Synonyms: "bronchi epithelial tissue" EXACT [OBOL:automatic]
"bronchi epithelium" EXACT [OBOL:automatic]
"bronchial epithelium" EXACT []
"bronchial trunk epithelial tissue" EXACT [OBOL:automatic]
"bronchial trunk epithelium" EXACT [OBOL:automatic]
"bronchus epithelial tissue" EXACT [OBOL:automatic]
"bronchus epithelium" EXACT []
"epithelial tissue of bronchi" EXACT [OBOL:automatic]
"epithelial tissue of bronchial trunk" EXACT [OBOL:automatic]
"epithelial tissue of bronchus" EXACT [OBOL:automatic]
"epithelium of bronchi" EXACT [OBOL:automatic]
"epithelium of bronchial trunk" EXACT [OBOL:automatic]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_67782-MA_0001839

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000485(simple columnar epithelium),UBERON:0004815(lower respiratory tract epithelium)
part_of:UBERON:0002185(bronchus)



Children

part of:CL:0002328 (bronchial epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002031 (epithelium of bronchus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.71e-84FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_3c1c44f62f4b34aef5e352028c6ebcc7p@chr3:189632708..189632721, -
1.71e-84FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_3c1c44f62f4b34aef5e352028c6ebcc7p@chr3:189632708..189632721, -
2.4e-66FFCP PHASE2:Hg19::chr1:209823455..209823467,-#_0919ea1f1492b96e595a1c224cd001dcp@chr1:209823455..209823467, -
2.4e-66FFCP PHASE1:Hg19::chr1:209823455..209823467,-#_0919ea1f1492b96e595a1c224cd001dcp@chr1:209823455..209823467, -
3.13e-50FFCP PHASE2:Hg19::chr1:95088552..95088567,+#_b91b526aca2db3246f42f10221615aa0p@chr1:95088552..95088567, +
3.13e-50FFCP PHASE1:Hg19::chr1:95088552..95088567,+#_b91b526aca2db3246f42f10221615aa0p@chr1:95088552..95088567, +
1.03e-46FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_8735df81873d64147e4b6af61b09abfdp@chr1:3591362..3591369, -
1.03e-46FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_8735df81873d64147e4b6af61b09abfdp@chr1:3591362..3591369, -
5.0e-45FFCP PHASE1:Hg19::chr2:113830230..113830233,-#_d294976de922f9cf249390b6b214c944p@chr2:113830230..113830233, -
5.0e-45FFCP PHASE2:Hg19::chr2:113830230..113830233,-#_d294976de922f9cf249390b6b214c944p@chr2:113830230..113830233, -
1.92e-43FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_5dad6c710b91e902b575433ac16d87a4p@chr10:73679250..73679255, -
1.92e-43FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_5dad6c710b91e902b575433ac16d87a4p@chr10:73679250..73679255, -
7.6e-41FFCP PHASE1:Hg19::chr1:9953308..9953320,-#_da8f1f7720ee8f4617d924fe8648a3ebp9@CTNNBIP1
7.6e-41FFCP PHASE2:Hg19::chr1:9953308..9953320,-#_da8f1f7720ee8f4617d924fe8648a3ebp9@CTNNBIP1
1.49e-38FFCP PHASE1:Hg19::chr17:48611912..48611919,+#_f65706d030c264a52907edf052f9e992p7@EPN3
1.49e-38FFCP PHASE2:Hg19::chr17:48611912..48611919,+#_f65706d030c264a52907edf052f9e992p7@EPN3
1.62e-38FFCP PHASE2:Hg19::chr1:95089255..95089279,-#_cacf7209a40d09d8d986b4af2aea3ecdp1@ENST00000435559
1.62e-38FFCP PHASE1:Hg19::chr1:95089255..95089279,-#_cacf7209a40d09d8d986b4af2aea3ecdp1@ENST00000435559
1.8e-38FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_0e75c6dece41385f8591613a45551acdp@chr7:135018332..135018336, +
1.8e-38FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_0e75c6dece41385f8591613a45551acdp@chr7:135018332..135018336, +
3.06e-38FFCP PHASE1:Hg19::chr17:48611940..48611947,+#_0ffcc4bc89b7edb99935259f16a04af5p5@EPN3
3.06e-38FFCP PHASE2:Hg19::chr17:48611940..48611947,+#_0ffcc4bc89b7edb99935259f16a04af5p5@EPN3
5.76e-38FFCP PHASE1:Hg19::chr2:74211227..74211238,+#_939496d229cd832cbb703bf54cbf1d96p@chr2:74211227..74211238, +
5.76e-38FFCP PHASE2:Hg19::chr2:74211227..74211238,+#_939496d229cd832cbb703bf54cbf1d96p@chr2:74211227..74211238, +
2.35e-36FFCP PHASE2:Hg19::chr17:38179639..38179652,-#_f91d8b8fe48ceed67337b7f832bfea01p7@MED24
2.35e-36FFCP PHASE1:Hg19::chr17:38179639..38179652,-#_f91d8b8fe48ceed67337b7f832bfea01p7@MED24
2.53e-35FFCP PHASE1:Hg19::chr20:14248741..14248745,-#_b58921276eb476ff556c8b20fa593505p@chr20:14248741..14248745, -
2.53e-35FFCP PHASE2:Hg19::chr20:14248741..14248745,-#_b58921276eb476ff556c8b20fa593505p@chr20:14248741..14248745, -
1.96e-34FFCP PHASE2:Hg19::chr17:38652393..38652403,-#_5a3d39e42150ae9c1d0aed08e806748ep16@TNS4
1.96e-34FFCP PHASE1:Hg19::chr17:38652393..38652403,-#_5a3d39e42150ae9c1d0aed08e806748ep16@TNS4
2.75e-34FFCP PHASE1:Hg19::chr1:153540420..153540455,+#_5a03401367e55830a62c543e7409c0f1p@chr1:153540420..153540455, +
2.75e-34FFCP PHASE2:Hg19::chr1:153540420..153540455,+#_5a03401367e55830a62c543e7409c0f1p@chr1:153540420..153540455, +
3.07e-34FFCP PHASE2:Hg19::chr12:52844247..52844256,-#_3d422a2138549adcce699a2d835d4a7dp@chr12:52844247..52844256, -
3.07e-34FFCP PHASE1:Hg19::chr12:52844247..52844256,-#_3d422a2138549adcce699a2d835d4a7dp@chr12:52844247..52844256, -
5.51e-34FFCP PHASE1:Hg19::chr11:94427497..94427507,-#_35905ce770dbef1dbf811c6742553ddfp@chr11:94427497..94427507, -
5.51e-34FFCP PHASE2:Hg19::chr11:94427497..94427507,-#_35905ce770dbef1dbf811c6742553ddfp@chr11:94427497..94427507, -
5.96e-34FFCP PHASE2:Hg19::chr1:27181551..27181558,-#_1a07e1901eb95c57613de6ea260a07bdp@chr1:27181551..27181558, -
5.96e-34FFCP PHASE1:Hg19::chr1:27181551..27181558,-#_1a07e1901eb95c57613de6ea260a07bdp@chr1:27181551..27181558, -
6.76e-34FFCP PHASE1:Hg19::chr1:183133608..183133625,-#_f7fc1c5c9658ebe2c6efb86a78f96c5ap@chr1:183133608..183133625, -
6.76e-34FFCP PHASE2:Hg19::chr1:183133608..183133625,-#_f7fc1c5c9658ebe2c6efb86a78f96c5ap@chr1:183133608..183133625, -
1.27e-33FFCP PHASE1:Hg19::chr3:190252374..190252383,-#_0b6bcc10f9a90023287c84b673472974p@chr3:190252374..190252383, -
1.27e-33FFCP PHASE2:Hg19::chr3:190252374..190252383,-#_0b6bcc10f9a90023287c84b673472974p@chr3:190252374..190252383, -
1.5e-33FFCP PHASE1:Hg19::chr8:29414184..29414190,+#_59e247b0b8e089414e26a3d99da762b3p@chr8:29414184..29414190, +
1.5e-33FFCP PHASE2:Hg19::chr8:29414184..29414190,+#_59e247b0b8e089414e26a3d99da762b3p@chr8:29414184..29414190, +
6.66e-33FFCP PHASE1:Hg19::chr14:67879076..67879080,+#_4e62b5c3847ca9b15a54d9db49f50da1p@chr14:67879076..67879080, +
6.66e-33FFCP PHASE2:Hg19::chr14:67879076..67879080,+#_4e62b5c3847ca9b15a54d9db49f50da1p@chr14:67879076..67879080, +
1.14e-32FFCP PHASE1:Hg19::chr1:209807970..209807983,-#_b6c22381624bcab31a685940cbaac995p@chr1:209807970..209807983, -
1.14e-32FFCP PHASE2:Hg19::chr1:209807970..209807983,-#_b6c22381624bcab31a685940cbaac995p@chr1:209807970..209807983, -
2.68e-32FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_9decf3ef656df006f519055a8686b211p@chr6:83075367..83075383, -
2.68e-32FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_9decf3ef656df006f519055a8686b211p@chr6:83075367..83075383, -
2.95e-31FFCP PHASE1:Hg19::chr4:15937715..15937733,-#_3ab7cb3b6b8b8baabebac2bc355bf655p@chr4:15937715..15937733, -
2.95e-31FFCP PHASE2:Hg19::chr4:15937715..15937733,-#_3ab7cb3b6b8b8baabebac2bc355bf655p@chr4:15937715..15937733, -
6.66e-31FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_595b3c0b0cd5582edcb506a7f881e0a5p@chr9:26747081..26747110, +
6.66e-31FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_595b3c0b0cd5582edcb506a7f881e0a5p@chr9:26747081..26747110, +
1.0e-30FFCP PHASE2:Hg19::chr11:120008883..120008884,-#_530c888bdf626c0bc5e774094c822120p16@TRIM29
1.0e-30FFCP PHASE1:Hg19::chr11:120008883..120008884,-#_530c888bdf626c0bc5e774094c822120p16@TRIM29
1.09e-30FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_a450c334f160b1f1ecd8052cc394af5ep@chr13:61507880..61507904, -
1.09e-30FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_a450c334f160b1f1ecd8052cc394af5ep@chr13:61507880..61507904, -
1.47e-30FFCP PHASE2:Hg19::chr1:152475755..152475761,+#_41a9225c2bfbc70c0104c65393282241p@chr1:152475755..152475761, +
1.47e-30FFCP PHASE1:Hg19::chr1:152475755..152475761,+#_41a9225c2bfbc70c0104c65393282241p@chr1:152475755..152475761, +
1.66e-30FFCP PHASE1:Hg19::chr17:39777017..39777027,+#_d02bc35d6d84f9410056f0fabb2775c2p@chr17:39777017..39777027, +
1.66e-30FFCP PHASE2:Hg19::chr17:39777017..39777027,+#_d02bc35d6d84f9410056f0fabb2775c2p@chr17:39777017..39777027, +
1.71e-30FFCP PHASE1:Hg19::chr4:82554167..82554171,+#_37dedf0d3f8575d42968cdfb4b937bd2p@chr4:82554167..82554171, +
1.71e-30FFCP PHASE2:Hg19::chr4:82554167..82554171,+#_37dedf0d3f8575d42968cdfb4b937bd2p@chr4:82554167..82554171, +
2.24e-30FFCP PHASE1:Hg19::chr1:209825932..209825936,-#_611db38e95957832b00ec76d45417cc3p10@LAMB3
2.24e-30FFCP PHASE2:Hg19::chr1:209825932..209825936,-#_611db38e95957832b00ec76d45417cc3p10@LAMB3
3.1e-30FFCP PHASE1:Hg19::chr15:76443020..76443024,-#_29d11ff1353a64614cf2cd45a3ca25d2p@chr15:76443020..76443024, -
3.1e-30FFCP PHASE2:Hg19::chr15:76443020..76443024,-#_29d11ff1353a64614cf2cd45a3ca25d2p@chr15:76443020..76443024, -
3.11e-30FFCP PHASE2:Hg19::chr17:39780624..39780631,-#_af3f370e9b4644c1f00ed1c67645eb7bp8@KRT17
3.11e-30FFCP PHASE1:Hg19::chr17:39780624..39780631,-#_af3f370e9b4644c1f00ed1c67645eb7bp8@KRT17
5.61e-30FFCP PHASE1:Hg19::chr1:156720278..156720286,+#_36b3147999d409cff79618cea7a4ade1p15@PRCC
5.61e-30FFCP PHASE2:Hg19::chr1:156720278..156720286,+#_36b3147999d409cff79618cea7a4ade1p15@PRCC
8.74e-30FFCP PHASE1:Hg19::chr14:94426721..94426726,+#_c81b5c01094ad1f305ff558da77fd683p@chr14:94426721..94426726, +
8.74e-30FFCP PHASE2:Hg19::chr14:94426721..94426726,+#_c81b5c01094ad1f305ff558da77fd683p@chr14:94426721..94426726, +
1.34e-29FFCP PHASE2:Hg19::chr12:52913881..52913889,+#_400ed355de145ba75e94d762146d0aafp@chr12:52913881..52913889, +
1.34e-29FFCP PHASE1:Hg19::chr12:52913881..52913889,+#_400ed355de145ba75e94d762146d0aafp@chr12:52913881..52913889, +
1.63e-29FFCP PHASE2:Hg19::chr17:73719483..73719489,-#_9f3807943a5c76a5da4459138fb3793ep@chr17:73719483..73719489, -
1.63e-29FFCP PHASE1:Hg19::chr17:73719483..73719489,-#_9f3807943a5c76a5da4459138fb3793ep@chr17:73719483..73719489, -
1.98e-29FFCP PHASE1:Hg19::chr1:209827520..209827532,-#_90eee597d6b5e9f5c16fdca53702b59fp@chr1:209827520..209827532, -
1.98e-29FFCP PHASE2:Hg19::chr1:209827520..209827532,-#_90eee597d6b5e9f5c16fdca53702b59fp@chr1:209827520..209827532, -
2.64e-29FFCP PHASE2:Hg19::chr12:56332022..56332030,+#_be704b903700a36d1842e6b961484ea6p17@DGKA
2.64e-29FFCP PHASE1:Hg19::chr12:56332022..56332030,+#_be704b903700a36d1842e6b961484ea6p17@DGKA
3.27e-28FFCP PHASE2:Hg19::chr17:38657781..38657786,-#_c6f809e1ae5b2073f5b5fd6b1673b86fp15@TNS4
3.27e-28FFCP PHASE1:Hg19::chr17:38657781..38657786,-#_c6f809e1ae5b2073f5b5fd6b1673b86fp15@TNS4
4.32e-28FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_a5136886f22974ac67fb896121997e0ap@chr1:55436540..55436544, -
4.32e-28FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_a5136886f22974ac67fb896121997e0ap@chr1:55436540..55436544, -
6.24e-28FFCP PHASE1:Hg19::chr1:153534013..153534025,+#_cdc146323f64f711679d7fd1b100e415p@chr1:153534013..153534025, +
6.24e-28FFCP PHASE2:Hg19::chr1:153534013..153534025,+#_cdc146323f64f711679d7fd1b100e415p@chr1:153534013..153534025, +
8.22e-28FFCP PHASE1:Hg19::chr17:39768786..39768828,-#_66c80e3b7d67d95a18f97f6c55e274ffp2@KRT16
8.22e-28FFCP PHASE2:Hg19::chr17:39768786..39768828,-#_66c80e3b7d67d95a18f97f6c55e274ffp2@KRT16
1.22e-27FFCP PHASE2:Hg19::chr1:44446555..44446566,+#_3617cebe9170469d2d52f6215f4c8dd0p16@B4GALT2
1.22e-27FFCP PHASE2:Hg19::chr19:48101913..48101916,-#_3617cebe9170469d2d52f6215f4c8dd0p@chr19:48101913..48101916, -
1.22e-27FFCP PHASE1:Hg19::chr2:70581573..70581577,-#_3617cebe9170469d2d52f6215f4c8dd0p@chr2:70581573..70581577, -
1.22e-27FFCP PHASE2:Hg19::chr2:70581573..70581577,-#_3617cebe9170469d2d52f6215f4c8dd0p@chr2:70581573..70581577, -
1.22e-27FFCP PHASE1:Hg19::chr1:153587360..153587377,-#_3617cebe9170469d2d52f6215f4c8dd0p@chr1:153587360..153587377, -
1.22e-27FFCP PHASE1:Hg19::chr1:44446555..44446566,+#_3617cebe9170469d2d52f6215f4c8dd0p16@B4GALT2
1.22e-27FFCP PHASE1:Hg19::chr19:48101913..48101916,-#_3617cebe9170469d2d52f6215f4c8dd0p@chr19:48101913..48101916, -
1.22e-27FFCP PHASE2:Hg19::chr1:153587360..153587377,-#_3617cebe9170469d2d52f6215f4c8dd0p@chr1:153587360..153587377, -
1.39e-27FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_9c2bacd69f9194918789c6a75f687625p@chr2:20402306..20402318, -
1.39e-27FFCP PHASE2:Hg19::chr1:46647115..46647118,-#_9c2bacd69f9194918789c6a75f687625p@chr1:46647115..46647118, -

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