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{{UBERON
{{UBERON
|id=UBERON:0000163
|alt_id=
|name=embryonic cloaca
|namespace=
|def="Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
|xref=EHDAA2:0000256;;EHDAA:4895;;EMAPA:27573;;EMAPA:27638
|is_a=UBERON:0000162;;UBERON:0002050
|synonym="cloaca" RELATED SENSU []
|comment=compare UBERON:0000162 cloaca
|comment=compare UBERON:0000162 cloaca
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0003064
|develops_from=UBERON:0003064
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000163
|is_a=UBERON:0000162 ;;UBERON:0002050 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001353
|name=embryonic cloaca
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0001008;;UBERON:0012361
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="cloaca" RELATED SENSU []
|union_of=
|xref=EHDAA2:0000256;;EHDAA:4895;;EMAPA:27573;;EMAPA:27638
}}
}}

Latest revision as of 17:07, 12 September 2014

Name:embryonic cloaca
Namespace:FANTOM
Definition:"Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
Xrefs:
links:

EHDAA2:0000256
EHDAA:4895
EMAPA:27573

EMAPA:27638
Synonyms: "cloaca" RELATED SENSU []
Comments:compare UBERON:0000162 cloaca

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000162(cloaca),UBERON:0002050(embryonic structure),UBERON:0006554(urinary system structure)
develops_from:UBERON:0003064(intermediate mesoderm)
part_of:UBERON:0000922(embryo),UBERON:0001008(renal system),UBERON:0012361(internal anal region)



Children

part of:UBERON:0000164 (primitive urogenital sinus),UBERON:0009846 (embryonic cloacal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000163 (embryonic cloaca), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.58e-44FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_e316cf67cdea70cfd5faed19ab5c809ap@chr1:132699659..132699668, +
4.58e-44FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_e316cf67cdea70cfd5faed19ab5c809ap@chr1:132699659..132699668, +
1.7e-39FFCP PHASE1:Mm9::chr15:58237385..58237400,+#_e3e0ddc85fd10543e181f235533b6410p@chr15:58237385..58237400, +
1.7e-39FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_e3e0ddc85fd10543e181f235533b6410p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_e3e0ddc85fd10543e181f235533b6410p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_e3e0ddc85fd10543e181f235533b6410p@chr7:114836650..114836663, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425825..96425834,-#_e3e0ddc85fd10543e181f235533b6410p@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_e3e0ddc85fd10543e181f235533b6410p@chr9:96425983..96425992, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_e3e0ddc85fd10543e181f235533b6410p@chr9:96425983..96425992, +
1.7e-39FFCP PHASE2:Mm9::chr15:58237385..58237400,+#_e3e0ddc85fd10543e181f235533b6410p@chr15:58237385..58237400, +
2.66e-39FFCP PHASE1:Mm9::chr7:55028037..55028075,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr7:28914478..28914498,+#_074dff01ee6bc89ae62c73e7e0bd01b3p3@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr7:28924794..28924814,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE1:Mm9::chr7:28900349..28900364,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE2:Mm9::chr7:55028037..55028075,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520368..124520379,+#_074dff01ee6bc89ae62c73e7e0bd01b3p4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr9:36337031..36337049,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE1:Mm9::chr19:11353922..11353934,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr19:11353922..11353934, -
2.66e-39FFCP PHASE2:Mm9::chr6:124520322..124520333,+#_074dff01ee6bc89ae62c73e7e0bd01b3p3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr7:28922549..28922561,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE2:Mm9::chr6:124520368..124520379,+#_074dff01ee6bc89ae62c73e7e0bd01b3p4@C1rb
2.66e-39FFCP PHASE1:Mm9::chr9:120464717..120464741,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr9:120464717..120464741,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr6:42547567..42547580,-#_074dff01ee6bc89ae62c73e7e0bd01b3p4@Fam115e
2.66e-39FFCP PHASE2:Mm9::chr7:28924794..28924814,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE2:Mm9::chr7:28914450..28914477,+#_074dff01ee6bc89ae62c73e7e0bd01b3p2@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr6:124520322..124520333,+#_074dff01ee6bc89ae62c73e7e0bd01b3p3@C1rb
2.66e-39FFCP PHASE1:Mm9::chr9:120464756..120464765,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE2:Mm9::chr9:120464756..120464765,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE1:Mm9::chr9:36337031..36337049,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE2:Mm9::chr5:120136866..120136874,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr7:28914450..28914477,+#_074dff01ee6bc89ae62c73e7e0bd01b3p2@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28914478..28914498,+#_074dff01ee6bc89ae62c73e7e0bd01b3p3@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28900349..28900364,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr5:120136866..120136874,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr6:42547567..42547580,-#_074dff01ee6bc89ae62c73e7e0bd01b3p4@Fam115e
2.66e-39FFCP PHASE1:Mm9::chr7:28922549..28922561,+#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE2:Mm9::chr19:11353922..11353934,-#_074dff01ee6bc89ae62c73e7e0bd01b3p@chr19:11353922..11353934, -
2.02e-32FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_6b1e331f45efc4f4c3a4057eba0ce019p@chr10:91567053..91567066, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_6b1e331f45efc4f4c3a4057eba0ce019p@chr10:91567053..91567066, +
2.02e-32FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_6b1e331f45efc4f4c3a4057eba0ce019p@chr10:91567075..91567084, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_6b1e331f45efc4f4c3a4057eba0ce019p@chr10:91567075..91567084, +
4.03e-30FFCP PHASE1:Mm9::chr14:32955207..32955211,+#_6ff33442481e73ce0132f7e10c0ff600p1@Msmb
4.03e-30FFCP PHASE2:Mm9::chr7:31397780..31397790,-#_6ff33442481e73ce0132f7e10c0ff600p3@Upk1a
4.03e-30FFCP PHASE2:Mm9::chr3:92288406..92288413,-#_6ff33442481e73ce0132f7e10c0ff600p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr7:114836670..114836681,+#_6ff33442481e73ce0132f7e10c0ff600p@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr7:31397780..31397790,-#_6ff33442481e73ce0132f7e10c0ff600p3@Upk1a
4.03e-30FFCP PHASE1:Mm9::chr3:92288406..92288413,-#_6ff33442481e73ce0132f7e10c0ff600p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr14:32955207..32955211,+#_6ff33442481e73ce0132f7e10c0ff600p1@Msmb
4.03e-30FFCP PHASE1:Mm9::chr7:114836670..114836681,+#_6ff33442481e73ce0132f7e10c0ff600p@chr7:114836670..114836681, +
5.61e-30FFCP PHASE2:Mm9::chr9:74005044..74005065,+#_5ee69073d950a70efac9795692a1081bp@chr9:74005044..74005065, +
5.61e-30FFCP PHASE1:Mm9::chr6:54242736..54242738,-#_5ee69073d950a70efac9795692a1081bp@chr6:54242736..54242738, -
5.61e-30FFCP PHASE1:Mm9::chr6:134172953..134172958,+#_5ee69073d950a70efac9795692a1081bp@chr6:134172953..134172958, +
5.61e-30FFCP PHASE1:Mm9::chr6:42539787..42539797,-#_5ee69073d950a70efac9795692a1081bp@chr6:42539787..42539797, -
5.61e-30FFCP PHASE2:Mm9::chr16:20186645..20186650,+#_5ee69073d950a70efac9795692a1081bp@chr16:20186645..20186650, +
5.61e-30FFCP PHASE1:Mm9::chrX:137642090..137642093,-#_5ee69073d950a70efac9795692a1081bp8@Col4a6
5.61e-30FFCP PHASE1:Mm9::chr6:42547375..42547383,-#_5ee69073d950a70efac9795692a1081bp10@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr6:42539787..42539797,-#_5ee69073d950a70efac9795692a1081bp@chr6:42539787..42539797, -
5.61e-30FFCP PHASE1:Mm9::chr17:27866019..27866031,-#_5ee69073d950a70efac9795692a1081bp2@Spdef
5.61e-30FFCP PHASE1:Mm9::chr19:11353179..11353189,-#_5ee69073d950a70efac9795692a1081bp@chr19:11353179..11353189, -
5.61e-30FFCP PHASE2:Mm9::chr7:31388578..31388584,-#_5ee69073d950a70efac9795692a1081bp@chr7:31388578..31388584, -
5.61e-30FFCP PHASE1:Mm9::chr9:36341608..36341609,-#_5ee69073d950a70efac9795692a1081bp@chr9:36341608..36341609, -
5.61e-30FFCP PHASE1:Mm9::chr18:44429795..44429800,+#_5ee69073d950a70efac9795692a1081bp3@Npy6r
5.61e-30FFCP PHASE2:Mm9::chr17:27866019..27866031,-#_5ee69073d950a70efac9795692a1081bp2@Spdef
5.61e-30FFCP PHASE2:Mm9::chrX:75093379..75093383,+#_5ee69073d950a70efac9795692a1081bp@chrX:75093379..75093383, +
5.61e-30FFCP PHASE2:Mm9::chr6:42547375..42547383,-#_5ee69073d950a70efac9795692a1081bp10@Fam115e
5.61e-30FFCP PHASE1:Mm9::chr8:126864466..126864469,+#_5ee69073d950a70efac9795692a1081bp@chr8:126864466..126864469, +
5.61e-30FFCP PHASE1:Mm9::chr6:42541927..42541932,-#_5ee69073d950a70efac9795692a1081bp@chr6:42541927..42541932, -
5.61e-30FFCP PHASE1:Mm9::chr19:34791339..34791346,-#_5ee69073d950a70efac9795692a1081bp@chr19:34791339..34791346, -
5.61e-30FFCP PHASE2:Mm9::chr6:42541927..42541932,-#_5ee69073d950a70efac9795692a1081bp@chr6:42541927..42541932, -
5.61e-30FFCP PHASE2:Mm9::chr16:96752893..96752921,+#_5ee69073d950a70efac9795692a1081bp@chr16:96752893..96752921, +
5.61e-30FFCP PHASE1:Mm9::chr19:58073599..58073605,+#_5ee69073d950a70efac9795692a1081bp@chr19:58073599..58073605, +
5.61e-30FFCP PHASE2:Mm9::chr6:42548966..42548969,-#_5ee69073d950a70efac9795692a1081bp@chr6:42548966..42548969, -
5.61e-30FFCP PHASE2:Mm9::chr12:66314493..66314501,-#_5ee69073d950a70efac9795692a1081bp1@uc007nrj.1
5.61e-30FFCP PHASE1:Mm9::chr6:42536830..42536841,-#_5ee69073d950a70efac9795692a1081bp@chr6:42536830..42536841, -
5.61e-30FFCP PHASE2:Mm9::chr14:29722238..29722242,-#_5ee69073d950a70efac9795692a1081bp@chr14:29722238..29722242, -
5.61e-30FFCP PHASE2:Mm9::chr6:42536830..42536841,-#_5ee69073d950a70efac9795692a1081bp@chr6:42536830..42536841, -
5.61e-30FFCP PHASE1:Mm9::chr15:101506963..101506974,+#_5ee69073d950a70efac9795692a1081bp@chr15:101506963..101506974, +
5.61e-30FFCP PHASE1:Mm9::chr10:77520043..77520048,+#_5ee69073d950a70efac9795692a1081bp@chr10:77520043..77520048, +
5.61e-30FFCP PHASE2:Mm9::chr12:89223836..89223840,+#_5ee69073d950a70efac9795692a1081bp@chr12:89223836..89223840, +
5.61e-30FFCP PHASE1:Mm9::chr16:20188864..20188875,+#_5ee69073d950a70efac9795692a1081bp@chr16:20188864..20188875, +
5.61e-30FFCP PHASE2:Mm9::chr17:24172292..24172300,+#_5ee69073d950a70efac9795692a1081bp@chr17:24172292..24172300, +
5.61e-30FFCP PHASE2:Mm9::chr10:77520043..77520048,+#_5ee69073d950a70efac9795692a1081bp@chr10:77520043..77520048, +
5.61e-30FFCP PHASE1:Mm9::chr4:138419516..138419520,-#_5ee69073d950a70efac9795692a1081bp14@Pla2g5
5.61e-30FFCP PHASE1:Mm9::chr6:42535757..42535772,-#_5ee69073d950a70efac9795692a1081bp@chr6:42535757..42535772, -
5.61e-30FFCP PHASE2:Mm9::chr6:42535757..42535772,-#_5ee69073d950a70efac9795692a1081bp@chr6:42535757..42535772, -
5.61e-30FFCP PHASE2:Mm9::chr2:80164541..80164545,+#_5ee69073d950a70efac9795692a1081bp@chr2:80164541..80164545, +
5.61e-30FFCP PHASE1:Mm9::chrX:75093379..75093383,+#_5ee69073d950a70efac9795692a1081bp@chrX:75093379..75093383, +
5.61e-30FFCP PHASE1:Mm9::chr6:42548119..42548136,-#_5ee69073d950a70efac9795692a1081bp12@Fam115e
5.61e-30FFCP PHASE1:Mm9::chr6:22342065..22342073,-#_5ee69073d950a70efac9795692a1081bp@chr6:22342065..22342073, -
5.61e-30FFCP PHASE2:Mm9::chr15:84847637..84847642,+#_5ee69073d950a70efac9795692a1081bp3@Upk3a
5.61e-30FFCP PHASE1:Mm9::chr6:42539866..42539870,-#_5ee69073d950a70efac9795692a1081bp@chr6:42539866..42539870, -
5.61e-30FFCP PHASE2:Mm9::chr16:20188864..20188875,+#_5ee69073d950a70efac9795692a1081bp@chr16:20188864..20188875, +
5.61e-30FFCP PHASE1:Mm9::chr6:42547389..42547396,-#_5ee69073d950a70efac9795692a1081bp14@Fam115e
5.61e-30FFCP PHASE2:Mm9::chr6:42539866..42539870,-#_5ee69073d950a70efac9795692a1081bp@chr6:42539866..42539870, -
5.61e-30FFCP PHASE1:Mm9::chr15:101522998..101523006,-#_5ee69073d950a70efac9795692a1081bp@chr15:101522998..101523006, -
5.61e-30FFCP PHASE1:Mm9::chr12:114453231..114453265,-#_5ee69073d950a70efac9795692a1081bp@chr12:114453231..114453265, -
5.61e-30FFCP PHASE1:Mm9::chr11:57320631..57320636,-#_5ee69073d950a70efac9795692a1081bp5@Fam114a2
5.61e-30FFCP PHASE2:Mm9::chr8:126864466..126864469,+#_5ee69073d950a70efac9795692a1081bp@chr8:126864466..126864469, +
5.61e-30FFCP PHASE2:Mm9::chr10:75355747..75355754,-#_5ee69073d950a70efac9795692a1081bp@chr10:75355747..75355754, -

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