Personal tools

CL:0002368: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002368
|alt_id=
|name=airway epithelial cell;;respiratory epithelial cell
|namespace=cell;;efo
|def="An endo-epithelial cell of the respiratory tract." [GOC:tfm]
|xref=BTO:0004533
|is_a=CL:0002076
|synonym="airway epithelial cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-09-23T04:38:49Z
|def="An endo-epithelial cell of the respiratory tract." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002368
|is_a=CL:0002076
|is_obsolete=
|located_in=
|located_in=
|name=respiratory epithelial cell
|namespace=FANTOM
|obo_creation_date=2010-09-23T04:38:49Z
|part_of=UBERON:0000065
|part_of=UBERON:0000065
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="airway epithelial cell" EXACT []
|union_of=
|xref=BTO:0004533
}}
}}

Latest revision as of 16:42, 12 September 2014

Name:respiratory epithelial cell
Namespace:FANTOM
Definition:"An endo-epithelial cell of the respiratory tract." [GOC:tfm]
Xrefs:
links:
BTO:0004533
Synonyms: "airway epithelial cell" EXACT []
Created by:tmeehan
Creation date:2010-09-23T04:38:49Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002076(endo-epithelial cell)
part_of:UBERON:0000065(respiratory tract)



Children


is a:CL:0002632 (epithelial cell of lower respiratory tract)
derives from:FF:0000166 (human small airway epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002368 (respiratory epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_eae8d5b39e216513cb903472270bde9ep@chr5:135420996..135421000, +
1.58e-86FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_eae8d5b39e216513cb903472270bde9ep@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_eae8d5b39e216513cb903472270bde9ep1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_eae8d5b39e216513cb903472270bde9ep@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_eae8d5b39e216513cb903472270bde9ep3@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_eae8d5b39e216513cb903472270bde9ep@chr5:135422125..135422141, -
1.58e-86FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_eae8d5b39e216513cb903472270bde9ep@chr3:89487103..89487111, -
1.58e-86FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_eae8d5b39e216513cb903472270bde9ep@chr6:147205677..147205683, +
1.58e-86FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_eae8d5b39e216513cb903472270bde9ep@chr5:91199084..91199088, -
1.58e-86FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_eae8d5b39e216513cb903472270bde9ep@chr2:164389604..164389615, +
1.58e-86FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_eae8d5b39e216513cb903472270bde9ep@chr6:147338308..147338339, -
1.58e-86FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_eae8d5b39e216513cb903472270bde9ep@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_eae8d5b39e216513cb903472270bde9ep@chr9:110941246..110941254, +
1.58e-86FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_eae8d5b39e216513cb903472270bde9ep@chr2:60538178..60538182, -
1.58e-86FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_eae8d5b39e216513cb903472270bde9ep@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_eae8d5b39e216513cb903472270bde9ep@chr15:101258041..101258052, +
1.58e-86FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_eae8d5b39e216513cb903472270bde9ep@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_eae8d5b39e216513cb903472270bde9ep@chr3:89487103..89487111, -
1.58e-86FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_eae8d5b39e216513cb903472270bde9ep@chr11:4165247..4165267, +
1.58e-86FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_eae8d5b39e216513cb903472270bde9ep@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_eae8d5b39e216513cb903472270bde9ep2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_eae8d5b39e216513cb903472270bde9ep@chr11:100006864..100006873, +
1.58e-86FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_eae8d5b39e216513cb903472270bde9ep@chr9:110941233..110941240, +
1.58e-86FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_eae8d5b39e216513cb903472270bde9ep@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_eae8d5b39e216513cb903472270bde9ep@chr2:164393992..164394012, -
1.58e-86FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_eae8d5b39e216513cb903472270bde9ep@chr1:151954385..151954387, +
1.58e-86FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_eae8d5b39e216513cb903472270bde9ep@chr11:4165247..4165267, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_eae8d5b39e216513cb903472270bde9ep@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_eae8d5b39e216513cb903472270bde9ep@chr13:115644652..115644657, -
1.58e-86FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_eae8d5b39e216513cb903472270bde9ep@chr17:25885558..25885567, +
1.58e-86FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_eae8d5b39e216513cb903472270bde9ep@chr11:86461733..86461747, -
1.58e-86FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_eae8d5b39e216513cb903472270bde9ep@chr5:91199084..91199088, -
1.58e-86FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_eae8d5b39e216513cb903472270bde9ep@chr9:110941246..110941254, +
1.58e-86FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_eae8d5b39e216513cb903472270bde9ep@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_eae8d5b39e216513cb903472270bde9ep@chr2:164389604..164389615, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_eae8d5b39e216513cb903472270bde9ep3@Gm12603
1.58e-86FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_eae8d5b39e216513cb903472270bde9ep@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_eae8d5b39e216513cb903472270bde9ep@chr13:115722413..115722430, +
1.58e-86FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_eae8d5b39e216513cb903472270bde9ep@chr6:147205677..147205683, +
1.58e-86FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_eae8d5b39e216513cb903472270bde9ep@chr5:135422125..135422141, -
1.58e-86FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_eae8d5b39e216513cb903472270bde9ep@chr13:72401408..72401416, -
1.58e-86FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_eae8d5b39e216513cb903472270bde9ep@chr1:151954385..151954387, +
1.58e-86FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_eae8d5b39e216513cb903472270bde9ep@chr2:164393992..164394012, -
1.58e-86FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_eae8d5b39e216513cb903472270bde9ep@chr11:100006864..100006873, +
1.58e-86FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_eae8d5b39e216513cb903472270bde9ep1@ENSMUST00000170876, p1@uc011ydj.1
1.58e-86FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_eae8d5b39e216513cb903472270bde9ep@chr1:108303887..108303893, +
1.58e-86FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_eae8d5b39e216513cb903472270bde9ep@chr5:135420996..135421000, +
1.58e-86FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_eae8d5b39e216513cb903472270bde9ep2@Gm12603
1.58e-86FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_eae8d5b39e216513cb903472270bde9ep@chr15:101258041..101258052, +
1.58e-86FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_eae8d5b39e216513cb903472270bde9ep@chr12:17549752..17549763, +
1.58e-86FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_eae8d5b39e216513cb903472270bde9ep@chr6:147205603..147205610, +
1.58e-86FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_eae8d5b39e216513cb903472270bde9ep@chr2:60538178..60538182, -
1.58e-86FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_eae8d5b39e216513cb903472270bde9ep@chr5:91198876..91198885, +
1.58e-86FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_eae8d5b39e216513cb903472270bde9ep@chr16:32641594..32641601, +
1.58e-86FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_eae8d5b39e216513cb903472270bde9ep@chr17:25885558..25885567, +
1.58e-86FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_eae8d5b39e216513cb903472270bde9ep@chr13:115722413..115722430, +
1.58e-86FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_eae8d5b39e216513cb903472270bde9ep@chr4:88563185..88563192, -
1.58e-86FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_eae8d5b39e216513cb903472270bde9ep@chr9:110941233..110941240, +
1.22e-77FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_b6bde569fc0028528417cd84339ba5b9p@chr7:135018332..135018336, +
1.22e-77FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_b6bde569fc0028528417cd84339ba5b9p@chr7:135018332..135018336, +
1.33e-65FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_f7ff4388e96665d4a100aee0bbe40e1bp@chr19:47939269..47939279, -
1.33e-65FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr3:121437587..121437593, +
1.33e-65FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr14:34905716..34905718, +
1.33e-65FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr14:34905716..34905718, +
1.33e-65FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr11:4164303..4164316, +
1.33e-65FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_f7ff4388e96665d4a100aee0bbe40e1bp3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr3:90392458..90392472, +
1.33e-65FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_f7ff4388e96665d4a100aee0bbe40e1bp3@Dtd1
1.33e-65FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr6:147212620..147212625, +
1.33e-65FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr3:90392458..90392472, +
1.33e-65FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_f7ff4388e96665d4a100aee0bbe40e1bp@chr19:47939269..47939279, -
1.33e-65FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_f7ff4388e96665d4a100aee0bbe40e1bp@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr6:147212620..147212625, +
1.33e-65FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr3:121437538..121437546, +
1.33e-65FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_f7ff4388e96665d4a100aee0bbe40e1bp@chr19:47932377..47932386, -
1.33e-65FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_f7ff4388e96665d4a100aee0bbe40e1bp@chr19:47932377..47932386, -
1.33e-65FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr11:100002128..100002131, +
1.33e-65FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_f7ff4388e96665d4a100aee0bbe40e1bp@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_f7ff4388e96665d4a100aee0bbe40e1bp@chr11:29642912..29642916, -
1.33e-65FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chrX:20383628..20383635, +
1.33e-65FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_f7ff4388e96665d4a100aee0bbe40e1bp@chr14:31386795..31386797, -
1.33e-65FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_f7ff4388e96665d4a100aee0bbe40e1bp@chr3:121437587..121437593, +
6.04e-65FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_29df9c7049557814587cf68aaa0bc5cbp@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_29df9c7049557814587cf68aaa0bc5cbp@chr17:25888467..25888513, -
6.04e-65FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_29df9c7049557814587cf68aaa0bc5cbp@chr15:38385124..38385138, +
6.04e-65FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_29df9c7049557814587cf68aaa0bc5cbp@chr19:47928736..47928764, +
6.04e-65FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_29df9c7049557814587cf68aaa0bc5cbp@chr1:90456476..90456498, +
6.04e-65FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_29df9c7049557814587cf68aaa0bc5cbp@chr17:25888467..25888513, -
6.04e-65FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_29df9c7049557814587cf68aaa0bc5cbp@chr1:90456476..90456498, +
6.04e-65FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_29df9c7049557814587cf68aaa0bc5cbp@chr15:38385124..38385138, +
4.82e-64FFCP PHASE2:Hg19::chr6:83075367..83075383,-#_3175e2945737ba085643bb27dcb86800p@chr6:83075367..83075383, -
4.82e-64FFCP PHASE1:Hg19::chr6:83075367..83075383,-#_3175e2945737ba085643bb27dcb86800p@chr6:83075367..83075383, -
8.96e-61FFCP PHASE1:Hg19::chr13:61507880..61507904,-#_c1e1aea180b472ef12961fd8a6e8a2d5p@chr13:61507880..61507904, -
8.96e-61FFCP PHASE2:Hg19::chr13:61507880..61507904,-#_c1e1aea180b472ef12961fd8a6e8a2d5p@chr13:61507880..61507904, -
3.1e-54FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_d832c3a210adb828246f53df581dce39p@chr3:189632708..189632721, -
3.1e-54FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_d832c3a210adb828246f53df581dce39p@chr3:189632708..189632721, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002368&oldid=3275460"