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{{CL
{{CL
|id=CL:0002476
|alt_id=
|name=bone marrow macrophage
|namespace=cell;;efo
|def="A tissue-resident macrophage located in the bone marrow.  This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
|xref=BTO:0004732
|is_a=CL:0000864
|synonym="MF.BM" RELATED []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-11-23T04:19:25Z
|def="A tissue-resident macrophage located in the bone marrow.  This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002476
|is_a=CL:0000864 ;;CL:1001610
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=bone marrow macrophage
|namespace=FANTOM
|obo_creation_date=2010-11-23T04:19:25Z
|part_of=UBERON:0002371
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="MF.BM" RELATED []
|union_of=
|xref=BTO:0004732
}}
}}

Latest revision as of 16:43, 12 September 2014

Name:bone marrow macrophage
Namespace:FANTOM
Definition:"A tissue-resident macrophage located in the bone marrow. This cell type is B220-negative, CD3e-negative, Ly-6C-negative, CD115-positive, F4/80-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
Xrefs:
links:
BTO:0004732
Synonyms: "MF.BM" RELATED []
Created by:tmeehan
Creation date:2010-11-23T04:19:25Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000864(tissue-resident macrophage),CL:1001610(bone marrow hematopoietic cell)
part_of:UBERON:0002371(bone marrow)



Children


is a:FF:3704-172A1 (macrophage, bone marrow derived),FF:3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)
derives from:FF:0200021 (macrophage, bone marrow-derived sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 2171-50H8 (macrophage, bone marrow derived)
  • 3560-170A1 (macrophage, bone marrow derived)
  • 3632-171A1 (macrophage, bone marrow derived)
  • 3704-172A1 (macrophage, bone marrow derived)
  • 3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)

Mouse (Mus musculus)

  • 2171-50H8 (macrophage, bone marrow derived)
  • 3560-170A1 (macrophage, bone marrow derived)
  • 3632-171A1 (macrophage, bone marrow derived)
  • 3704-172A1 (macrophage, bone marrow derived)
  • 3967-173D4 (macrophage, TB infection, non-stimulated BMDM, without Mtb)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002476 (bone marrow macrophage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr13:13485859..13485864,-#_6a364f1402d8e18764648d55a21d5328p4@Gpr137b
1.87e-86FFCP PHASE1:Mm9::chrX:9046562..9046572,-#_6a364f1402d8e18764648d55a21d5328p4@Cybb
1.87e-86FFCP PHASE1:Mm9::chr13:103497023..103497030,+#_6a364f1402d8e18764648d55a21d5328p@chr13:103497023..103497030, +
1.87e-86FFCP PHASE2:Mm9::chr6:48989609..48989612,+#_6a364f1402d8e18764648d55a21d5328p@chr6:48989609..48989612, +
1.87e-86FFCP PHASE1:Mm9::chr7:31145621..31145622,+#_6a364f1402d8e18764648d55a21d5328p@chr7:31145621..31145622, +
1.87e-86FFCP PHASE2:Mm9::chr11:4733080..4733087,-#_6a364f1402d8e18764648d55a21d5328p13@Nf2
1.87e-86FFCP PHASE1:Mm9::chr11:4733080..4733087,-#_6a364f1402d8e18764648d55a21d5328p13@Nf2
1.87e-86FFCP PHASE2:Mm9::chrX:9046562..9046572,-#_6a364f1402d8e18764648d55a21d5328p4@Cybb
1.87e-86FFCP PHASE2:Mm9::chr4:136685291..136685295,+#_6a364f1402d8e18764648d55a21d5328p@chr4:136685291..136685295, +
1.87e-86FFCP PHASE1:Mm9::chr6:48989609..48989612,+#_6a364f1402d8e18764648d55a21d5328p@chr6:48989609..48989612, +
1.87e-86FFCP PHASE2:Mm9::chr13:103497023..103497030,+#_6a364f1402d8e18764648d55a21d5328p@chr13:103497023..103497030, +
1.87e-86FFCP PHASE1:Mm9::chr7:135282667..135282669,+#_6a364f1402d8e18764648d55a21d5328p@chr7:135282667..135282669, +
1.87e-86FFCP PHASE2:Mm9::chr7:135282667..135282669,+#_6a364f1402d8e18764648d55a21d5328p@chr7:135282667..135282669, +
1.87e-86FFCP PHASE1:Mm9::chr4:136685291..136685295,+#_6a364f1402d8e18764648d55a21d5328p@chr4:136685291..136685295, +
1.87e-86FFCP PHASE2:Mm9::chr7:31145621..31145622,+#_6a364f1402d8e18764648d55a21d5328p@chr7:31145621..31145622, +
1.87e-86FFCP PHASE2:Mm9::chr13:13485859..13485864,-#_6a364f1402d8e18764648d55a21d5328p4@Gpr137b
1.68e-58FFCP PHASE2:Mm9::chr3:151394747..151394780,-#_daac446b788b7146e1418827035867f6p@chr3:151394747..151394780, -
1.68e-58FFCP PHASE2:Mm9::chr17:25273605..25273609,+#_daac446b788b7146e1418827035867f6p6@Clcn7
1.68e-58FFCP PHASE2:Mm9::chr6:122528009..122528020,-#_daac446b788b7146e1418827035867f6p@chr6:122528009..122528020, -
1.68e-58FFCP PHASE2:Mm9::chr3:95358394..95358404,+#_daac446b788b7146e1418827035867f6p@chr3:95358394..95358404, +
1.68e-58FFCP PHASE1:Mm9::chrX:9046606..9046630,-#_daac446b788b7146e1418827035867f6p3@Cybb
1.68e-58FFCP PHASE1:Mm9::chr6:122528009..122528020,-#_daac446b788b7146e1418827035867f6p@chr6:122528009..122528020, -
1.68e-58FFCP PHASE1:Mm9::chr17:25273605..25273609,+#_daac446b788b7146e1418827035867f6p6@Clcn7
1.68e-58FFCP PHASE2:Mm9::chr13:76099911..76099914,+#_daac446b788b7146e1418827035867f6p@chr13:76099911..76099914, +
1.68e-58FFCP PHASE2:Mm9::chr1:173159807..173159816,-#_daac446b788b7146e1418827035867f6p@chr1:173159807..173159816, -
1.68e-58FFCP PHASE2:Mm9::chr19:12539392..12539396,+#_daac446b788b7146e1418827035867f6p@chr19:12539392..12539396, +
1.68e-58FFCP PHASE1:Mm9::chr19:12539392..12539396,+#_daac446b788b7146e1418827035867f6p@chr19:12539392..12539396, +
1.68e-58FFCP PHASE1:Mm9::chr13:76099911..76099914,+#_daac446b788b7146e1418827035867f6p@chr13:76099911..76099914, +
1.68e-58FFCP PHASE1:Mm9::chr7:128207732..128207737,-#_daac446b788b7146e1418827035867f6p@chr7:128207732..128207737, -
1.68e-58FFCP PHASE2:Mm9::chrX:9046606..9046630,-#_daac446b788b7146e1418827035867f6p3@Cybb
1.68e-58FFCP PHASE1:Mm9::chr1:173159807..173159816,-#_daac446b788b7146e1418827035867f6p@chr1:173159807..173159816, -
1.68e-58FFCP PHASE2:Mm9::chr7:128207732..128207737,-#_daac446b788b7146e1418827035867f6p@chr7:128207732..128207737, -
1.68e-58FFCP PHASE1:Mm9::chr3:151394747..151394780,-#_daac446b788b7146e1418827035867f6p@chr3:151394747..151394780, -
1.68e-58FFCP PHASE1:Mm9::chr3:95358394..95358404,+#_daac446b788b7146e1418827035867f6p@chr3:95358394..95358404, +
6.41e-58FFCP PHASE2:Mm9::chr16:32400811..32400820,+#_744bf2dc1a9516e26a4d505b6545a5b1p4@Tm4sf19
6.41e-58FFCP PHASE1:Mm9::chr16:32400811..32400820,+#_744bf2dc1a9516e26a4d505b6545a5b1p4@Tm4sf19
6.41e-58FFCP PHASE1:Mm9::chr10:127033266..127033304,+#_744bf2dc1a9516e26a4d505b6545a5b1p1@ENSMUST00000124182
6.41e-58FFCP PHASE2:Mm9::chr10:127033266..127033304,+#_744bf2dc1a9516e26a4d505b6545a5b1p1@ENSMUST00000124182
1.66e-44FFCP PHASE1:Mm9::chr3:122563187..122563188,+#_e827913f4c0381991c9a259302c24aabp@chr3:122563187..122563188, +
1.66e-44FFCP PHASE2:Mm9::chr3:122563187..122563188,+#_e827913f4c0381991c9a259302c24aabp@chr3:122563187..122563188, +
1.66e-44FFCP PHASE1:Mm9::chr7:29692313..29692318,-#_e827913f4c0381991c9a259302c24aabp11@Actn4
1.66e-44FFCP PHASE2:Mm9::chr12:104680569..104680588,-#_e827913f4c0381991c9a259302c24aabp@chr12:104680569..104680588, -
1.66e-44FFCP PHASE1:Mm9::chr3:95350717..95350726,+#_e827913f4c0381991c9a259302c24aabp@chr3:95350717..95350726, +
1.66e-44FFCP PHASE2:Mm9::chr3:95350717..95350726,+#_e827913f4c0381991c9a259302c24aabp@chr3:95350717..95350726, +
1.66e-44FFCP PHASE1:Mm9::chr12:104680569..104680588,-#_e827913f4c0381991c9a259302c24aabp@chr12:104680569..104680588, -
1.66e-44FFCP PHASE2:Mm9::chr16:44106307..44106309,-#_e827913f4c0381991c9a259302c24aabp@chr16:44106307..44106309, -
1.66e-44FFCP PHASE2:Mm9::chr7:29692313..29692318,-#_e827913f4c0381991c9a259302c24aabp11@Actn4
1.66e-44FFCP PHASE2:Mm9::chr6:122798286..122798297,-#_e827913f4c0381991c9a259302c24aabp@chr6:122798286..122798297, -
1.66e-44FFCP PHASE1:Mm9::chr16:44106307..44106309,-#_e827913f4c0381991c9a259302c24aabp@chr16:44106307..44106309, -
1.66e-44FFCP PHASE1:Mm9::chr6:122798286..122798297,-#_e827913f4c0381991c9a259302c24aabp@chr6:122798286..122798297, -
1.66e-44FFCP PHASE2:Mm9::chr13:20988377..20988387,+#_e827913f4c0381991c9a259302c24aabp@chr13:20988377..20988387, +
1.66e-44FFCP PHASE1:Mm9::chr13:20988377..20988387,+#_e827913f4c0381991c9a259302c24aabp@chr13:20988377..20988387, +
2.75e-44FFCP PHASE1:Mm9::chr14:103412110..103412119,+#_c8ba89226db401f97d4daea4a7c52ef6p@chr14:103412110..103412119, +
2.75e-44FFCP PHASE2:Mm9::chr11:88785582..88785590,-#_c8ba89226db401f97d4daea4a7c52ef6p@chr11:88785582..88785590, -
2.75e-44FFCP PHASE2:Mm9::chr14:103412110..103412119,+#_c8ba89226db401f97d4daea4a7c52ef6p@chr14:103412110..103412119, +
2.75e-44FFCP PHASE1:Mm9::chr11:88785582..88785590,-#_c8ba89226db401f97d4daea4a7c52ef6p@chr11:88785582..88785590, -
4.23e-36FFCP PHASE2:Mm9::chr7:128207758..128207768,-#_0d87922d81c514c1dd6fe1be989b67b6p@chr7:128207758..128207768, -
4.23e-36FFCP PHASE2:Mm9::chr3:96097919..96097924,-#_0d87922d81c514c1dd6fe1be989b67b6p2@Fcgr1
4.23e-36FFCP PHASE1:Mm9::chr7:128207758..128207768,-#_0d87922d81c514c1dd6fe1be989b67b6p@chr7:128207758..128207768, -
4.23e-36FFCP PHASE1:Mm9::chr3:96097919..96097924,-#_0d87922d81c514c1dd6fe1be989b67b6p2@Fcgr1
6.35e-36FFCP PHASE1:Mm9::chr11:8475592..8475595,-#_a525339e6e81ca74a8c171c4292a8c5dp@chr11:8475592..8475595, -
6.35e-36FFCP PHASE2:Mm9::chr11:8475592..8475595,-#_a525339e6e81ca74a8c171c4292a8c5dp@chr11:8475592..8475595, -
6.35e-36FFCP PHASE1:Mm9::chr9:37046383..37046386,-#_a525339e6e81ca74a8c171c4292a8c5dp@chr9:37046383..37046386, -
6.35e-36FFCP PHASE2:Mm9::chr9:37046383..37046386,-#_a525339e6e81ca74a8c171c4292a8c5dp@chr9:37046383..37046386, -
9.52e-36FFCP PHASE1:Mm9::chr4:144493873..144493880,-#_867d5608800f15ca602711160e7c7220p@chr4:144493873..144493880, -
9.52e-36FFCP PHASE2:Mm9::chr4:144493873..144493880,-#_867d5608800f15ca602711160e7c7220p@chr4:144493873..144493880, -
1.42e-35FFCP PHASE1:Mm9::chr15:80502066..80502076,+#_f32b3a5980f26e61e4c58209c267ad06p3@Fam83f
1.42e-35FFCP PHASE2:Mm9::chr11:64022543..64022554,-#_f32b3a5980f26e61e4c58209c267ad06p@chr11:64022543..64022554, -
1.42e-35FFCP PHASE2:Mm9::chr15:80502066..80502076,+#_f32b3a5980f26e61e4c58209c267ad06p3@Fam83f
1.42e-35FFCP PHASE1:Mm9::chr11:64022543..64022554,-#_f32b3a5980f26e61e4c58209c267ad06p@chr11:64022543..64022554, -
2.13e-35FFCP PHASE2:Mm9::chrX:104344399..104344411,+#_ccb9d172c2e24c75a1f2998697d1c412p9@A630033H20Rik
2.13e-35FFCP PHASE1:Mm9::chr1:77948007..77948014,+#_ccb9d172c2e24c75a1f2998697d1c412p@chr1:77948007..77948014, +
2.13e-35FFCP PHASE2:Mm9::chr11:97857366..97857389,-#_ccb9d172c2e24c75a1f2998697d1c412p3@Arl5c
2.13e-35FFCP PHASE1:Mm9::chr11:97857366..97857389,-#_ccb9d172c2e24c75a1f2998697d1c412p3@Arl5c
2.13e-35FFCP PHASE2:Mm9::chr1:77948007..77948014,+#_ccb9d172c2e24c75a1f2998697d1c412p@chr1:77948007..77948014, +
2.13e-35FFCP PHASE2:Mm9::chr19:12517323..12517331,+#_ccb9d172c2e24c75a1f2998697d1c412p@chr19:12517323..12517331, +
2.13e-35FFCP PHASE1:Mm9::chrX:104344399..104344411,+#_ccb9d172c2e24c75a1f2998697d1c412p9@A630033H20Rik
2.13e-35FFCP PHASE1:Mm9::chr19:12517323..12517331,+#_ccb9d172c2e24c75a1f2998697d1c412p@chr19:12517323..12517331, +
3.18e-35FFCP PHASE1:Mm9::chr17:30675047..30675052,-#_ff1e75445f0877ab04d8b06ab96fa80cp@chr17:30675047..30675052, -
3.18e-35FFCP PHASE2:Mm9::chr17:30675047..30675052,-#_ff1e75445f0877ab04d8b06ab96fa80cp@chr17:30675047..30675052, -
1.73e-30FFCP PHASE1:Mm9::chr6:116583427..116583433,-#_428513479930f4a8961c2ad335439fb7p@chr6:116583427..116583433, -
1.73e-30FFCP PHASE1:Mm9::chrX:106302357..106302360,+#_428513479930f4a8961c2ad335439fb7p@chrX:106302357..106302360, +
1.73e-30FFCP PHASE1:Mm9::chr1:173159866..173159877,-#_428513479930f4a8961c2ad335439fb7p@chr1:173159866..173159877, -
1.73e-30FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_428513479930f4a8961c2ad335439fb7p@chr6:122805870..122805874, -
1.73e-30FFCP PHASE2:Mm9::chr1:173159866..173159877,-#_428513479930f4a8961c2ad335439fb7p@chr1:173159866..173159877, -
1.73e-30FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_428513479930f4a8961c2ad335439fb7p@chr6:122805870..122805874, -
1.73e-30FFCP PHASE2:Mm9::chr5:121337607..121337621,-#_428513479930f4a8961c2ad335439fb7p1@Oas1g
1.73e-30FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_428513479930f4a8961c2ad335439fb7p@chr10:116715054..116715061, -
1.73e-30FFCP PHASE1:Mm9::chr7:128207682..128207698,-#_428513479930f4a8961c2ad335439fb7p@chr7:128207682..128207698, -
1.73e-30FFCP PHASE2:Mm9::chr7:128207682..128207698,-#_428513479930f4a8961c2ad335439fb7p@chr7:128207682..128207698, -
1.73e-30FFCP PHASE1:Mm9::chr17:57501115..57501124,+#_428513479930f4a8961c2ad335439fb7p@chr17:57501115..57501124, +
1.73e-30FFCP PHASE2:Mm9::chrX:106302357..106302360,+#_428513479930f4a8961c2ad335439fb7p@chrX:106302357..106302360, +
1.73e-30FFCP PHASE1:Mm9::chr5:121337607..121337621,-#_428513479930f4a8961c2ad335439fb7p1@Oas1g
1.73e-30FFCP PHASE2:Mm9::chr6:116583427..116583433,-#_428513479930f4a8961c2ad335439fb7p@chr6:116583427..116583433, -
1.73e-30FFCP PHASE2:Mm9::chr17:57501115..57501124,+#_428513479930f4a8961c2ad335439fb7p@chr17:57501115..57501124, +
1.73e-30FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_428513479930f4a8961c2ad335439fb7p@chr10:116715054..116715061, -
2.43e-30FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_f704dd81a5f70c780745ad44275c3460p@chr11:69479320..69479327, -
2.43e-30FFCP PHASE1:Mm9::chr13:103496369..103496373,+#_f704dd81a5f70c780745ad44275c3460p@chr13:103496369..103496373, +
2.43e-30FFCP PHASE2:Mm9::chr13:103496369..103496373,+#_f704dd81a5f70c780745ad44275c3460p@chr13:103496369..103496373, +
2.43e-30FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_f704dd81a5f70c780745ad44275c3460p@chr11:69479320..69479327, -

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